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Search Results (32,874)

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31 pages, 2116 KiB  
Article
The First Step of AI in LEO SOPs: DRL-Driven Epoch Credibility Evaluation to Enhance Opportunistic Positioning Accuracy
by Jiaqi Yin, Feilong Li, Ruidan Luo, Xiao Chen, Linhui Zhao, Hong Yuan and Guang Yang
Remote Sens. 2025, 17(15), 2692; https://doi.org/10.3390/rs17152692 (registering DOI) - 3 Aug 2025
Abstract
Low Earth orbit (LEO) signal of opportunity (SOP) positioning relies on the accumulation of epochs obtained through prolonged observation periods. The contribution of an LEO satellite single epoch to positioning accuracy is influenced by multi-level characteristics that are challenging for traditional models. To [...] Read more.
Low Earth orbit (LEO) signal of opportunity (SOP) positioning relies on the accumulation of epochs obtained through prolonged observation periods. The contribution of an LEO satellite single epoch to positioning accuracy is influenced by multi-level characteristics that are challenging for traditional models. To address this limitation, we propose an Agent-Weighted Recursive Least Squares (RLS) Positioning Framework (AWR-PF). This framework employs an agent to comprehensively analyze individual epoch characteristics, assess their credibility, and convert them into adaptive weights for RLS iterations. We developed a novel Markov Decision Process (MDP) model to assist the agent in addressing the epoch weighting problem and trained the agent utilizing the Double Deep Q-Network (DDQN) algorithm on 107 h of Iridium signal data. Experimental validation on a separate 28 h Iridium signal test set through 97 positioning trials demonstrated that AWR-PF achieves superior average positioning accuracy compared to both standard RLS and randomly weighted RLS throughout nearly the entire iterative process. In a single positioning trial, AWR-PF improves positioning accuracy by up to 45.15% over standard RLS. To the best of our knowledge, this work represents the first instance where an AI algorithm is used as the core decision-maker in LEO SOP positioning, establishing a groundbreaking paradigm for future research. Full article
(This article belongs to the Special Issue LEO-Augmented PNT Service)
18 pages, 3801 KiB  
Article
Characteristics and Transcriptome Analysis of Anther Abortion in Male Sterile Celery (Apium graveolens L.)
by Yao Gong, Zhenyue Yang, Huan Li, Kexiao Lu, Chenyang Wang, Aisheng Xiong, Yangxia Zheng, Guofei Tan and Mengyao Li
Horticulturae 2025, 11(8), 901; https://doi.org/10.3390/horticulturae11080901 (registering DOI) - 3 Aug 2025
Abstract
To elucidate the molecular mechanisms underlying anther abortion in celery male sterile lines, this study investigates the morphological differences of floral organs and differential gene expression patterns between two lines at the flowering stage. Using the male sterile line of celery ‘QCBU-001’ and [...] Read more.
To elucidate the molecular mechanisms underlying anther abortion in celery male sterile lines, this study investigates the morphological differences of floral organs and differential gene expression patterns between two lines at the flowering stage. Using the male sterile line of celery ‘QCBU-001’ and the fertile line ‘Jinnan Shiqin’ as materials, anther structure was analyzed by paraffin sections, and related genes were detected using transcriptome sequencing and qRT-PCR. The results indicated that the anther locules were severely shrunken at maturity in the sterile lines. The callose deficiency led to abnormal development of microspores, preventing the formation of mature pollen grains and ultimately leading to complete anther abortion. The transcriptome results revealed that 3246 genes were differentially expressed in sterile and fertile lines, which were significantly enriched in pathways such as starch and sucrose metabolism and phenylpropanoid biosynthesis. Additionally, differential expression patterns of transcription factor families (MYB, bHLH, AP2, GRAS, and others) suggested their potential involvement in regulating anther abortion. Notably, the expression level of callose synthase gene AgGSL2 was significantly downregulated in sterile anthers, which might be an important cause of callose deficiency and pollen sterility. This study not only provides a theoretical basis for elucidating the molecular mechanism underlying male sterility in celery but also lays a foundation for the utilization and improvement of male sterile lines in vegetable hybrid breeding. Full article
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32 pages, 2640 KiB  
Article
Mechanism Analysis and Establishment of a Prediction Model for the Total Pressure Loss in the Multi-Branch Pipeline System of the Pneumatic Seeder
by Wei Qin, Cheng Qian, Yuwu Li, Daoqing Yan, Zhuorong Fan, Minghua Zhang, Ying Zang and Zaiman Wang
Agriculture 2025, 15(15), 1681; https://doi.org/10.3390/agriculture15151681 (registering DOI) - 3 Aug 2025
Abstract
This study aims to clarify the nonlinear pressure loss patterns of the pneumatic system in a pneumatic seeder under varying pipeline structures and airflow parameters, and to develop a rapid prediction equation for the main pipe’s pressure loss. The studied multi-branch pipeline system [...] Read more.
This study aims to clarify the nonlinear pressure loss patterns of the pneumatic system in a pneumatic seeder under varying pipeline structures and airflow parameters, and to develop a rapid prediction equation for the main pipe’s pressure loss. The studied multi-branch pipeline system consists of a main pipe, a header, and ten branch pipes. The main pipe is vertically installed at the center of the header in a straight-line configuration. The ten branch pipes are symmetrically and evenly spaced along the axial direction of the header, distributed on both sides of the main pipe. The outlet directions of the branch pipes are arranged in a 180° orientation opposite to the inlet direction of the main pipe, forming a symmetric multi-branch configuration. Firstly, this study investigated the flow characteristics within the multi-branch pipeline of the pneumatic system and elaborated on the mechanism of flow division in the pipeline. The key geometric factors affecting airflow were identified. Secondly, from a microscopic perspective, CFD simulations were employed to analyze the fundamental causes of pressure loss in the multi-branch pipeline system. Finally, from a macroscopic perspective, a dimensional analysis method was used to establish an empirical equation describing the relationship between the pressure loss (P) and several influencing factors, including the air density (ρ), air’s dynamic viscosity (μ), closed-end length of the header (Δl), branch pipe 1’s flow rate (Q), main pipe’s inner diameter (D), header’s inner diameter (γ), branch pipe’s inner diameter (d), and the spacing of the branch pipe (δ). The results of the bench tests indicate that when 0.0018 m3·s1Q ≤ 0.0045 m3·s1, 0.0272 m < d ≤ 0.036 m, 0.225 m < δ ≤ 0.26 m, 0.057 m ≤ γ ≤ 0.0814 m, and 0.0426 m ≤ D ≤ 0.0536 m, the prediction accuracy of the empirical equation can be controlled within 10%. Therefore, the equation provides a reference for the structural design and optimization of pneumatic seeders’ multi-branch pipelines. Full article
60 pages, 1110 KiB  
Review
The Redox Revolution in Brain Medicine: Targeting Oxidative Stress with AI, Multi-Omics and Mitochondrial Therapies for the Precision Eradication of Neurodegeneration
by Matei Șerban, Corneliu Toader and Răzvan-Adrian Covache-Busuioc
Int. J. Mol. Sci. 2025, 26(15), 7498; https://doi.org/10.3390/ijms26157498 (registering DOI) - 3 Aug 2025
Abstract
Oxidative stress is a defining and pervasive driver of neurodegenerative diseases, including Alzheimer’s disease (AD), Parkinson’s disease (PD), and amyotrophic lateral sclerosis (ALS). As a molecular accelerant, reactive oxygen species (ROS) and reactive nitrogen species (RNS) compromise mitochondrial function, amplify lipid peroxidation, induce [...] Read more.
Oxidative stress is a defining and pervasive driver of neurodegenerative diseases, including Alzheimer’s disease (AD), Parkinson’s disease (PD), and amyotrophic lateral sclerosis (ALS). As a molecular accelerant, reactive oxygen species (ROS) and reactive nitrogen species (RNS) compromise mitochondrial function, amplify lipid peroxidation, induce protein misfolding, and promote chronic neuroinflammation, creating a positive feedback loop of neuronal damage and cognitive decline. Despite its centrality in promoting disease progression, attempts to neutralize oxidative stress with monotherapeutic antioxidants have largely failed owing to the multifactorial redox imbalance affecting each patient and their corresponding variation. We are now at the threshold of precision redox medicine, driven by advances in syndromic multi-omics integration, Artificial Intelligence biomarker identification, and the precision of patient-specific therapeutic interventions. This paper will aim to reveal a mechanistically deep assessment of oxidative stress and its contribution to diseases of neurodegeneration, with an emphasis on oxidatively modified proteins (e.g., carbonylated tau, nitrated α-synuclein), lipid peroxidation biomarkers (F2-isoprostanes, 4-HNE), and DNA damage (8-OHdG) as significant biomarkers of disease progression. We will critically examine the majority of clinical trial studies investigating mitochondria-targeted antioxidants (e.g., MitoQ, SS-31), Nrf2 activators (e.g., dimethyl fumarate, sulforaphane), and epigenetic reprogramming schemes aiming to re-establish antioxidant defenses and repair redox damage at the molecular level of biology. Emerging solutions that involve nanoparticles (e.g., antioxidant delivery systems) and CRISPR (e.g., correction of mutations in SOD1 and GPx1) have the potential to transform therapeutic approaches to treatment for these diseases by cutting the time required to realize meaningful impacts and meaningful treatment. This paper will argue that with the connection between molecular biology and progress in clinical hyperbole, dynamic multi-targeted interventions will define the treatment of neurodegenerative diseases in the transition from disease amelioration to disease modification or perhaps reversal. With these innovations at our doorstep, the future offers remarkable possibilities in translating network-based biomarker discovery, AI-powered patient stratification, and adaptive combination therapies into individualized/long-lasting neuroprotection. The question is no longer if we will neutralize oxidative stress; it is how likely we will achieve success in the new frontier of neurodegenerative disease therapies. Full article
20 pages, 3151 KiB  
Article
Intermittent Hypoxia Induces Cognitive Dysfunction and Hippocampal Gene Expression Changes in a Mouse Model of Obstructive Sleep Apnea
by Kenta Miyo, Yuki Uchida, Ryota Nakano, Shotaro Kamijo, Masahiro Hosonuma, Yoshitaka Yamazaki, Hikaru Isobe, Fumihiro Ishikawa, Hiroshi Onimaru, Akira Yoshikawa, Shin-Ichi Sakakibara, Tatsunori Oguchi, Takuya Yokoe and Masahiko Izumizaki
Int. J. Mol. Sci. 2025, 26(15), 7495; https://doi.org/10.3390/ijms26157495 (registering DOI) - 3 Aug 2025
Abstract
Obstructive sleep apnea syndrome (OSAS) is characterized by cycles of decreased blood oxygen saturation followed by reoxygenation due to transient apnea. Cognitive dysfunction is a complication of OSAS, but its mechanisms remain unclear. Eight-week-old C57BL/6J mice were exposed to intermittent hypoxia (IH) to [...] Read more.
Obstructive sleep apnea syndrome (OSAS) is characterized by cycles of decreased blood oxygen saturation followed by reoxygenation due to transient apnea. Cognitive dysfunction is a complication of OSAS, but its mechanisms remain unclear. Eight-week-old C57BL/6J mice were exposed to intermittent hypoxia (IH) to model OSAS, and cognitive function and hippocampal gene expression were analyzed. Three groups were maintained for 28 days: an IH group (oxygen alternating between 10 and 21% in 2 min cycles, 8 h/day), sustained hypoxia group (SH) (10% oxygen, 8 h/day), and control group (21% oxygen). Behavioral tests and RNA sequencing (RNA-seq) analysis were performed. While Y-maze test results showed no differences, the IH group demonstrated impaired memory and learning in passive avoidance tests compared to control and SH groups. RNA-seq revealed coordinated suppression of mitochondrial function genes and oxidative stress response pathways, specifically in the IH group. RT-qPCR showed decreased Lars2, Hmcn1, and Vstm2l expression in the IH group. Pathway analysis showed the suppression of the KEAP1-NFE2L2 antioxidant pathway in the IH group vs. the SH group. Our findings demonstrate that IH induces cognitive dysfunction through suppression of the KEAP1-NFE2L2 antioxidant pathway and downregulation of mitochondrial genes (Lars2, Vstm2l), leading to oxidative stress and mitochondrial dysfunction. These findings advance our understanding of the molecular basis underlying OSAS-related cognitive impairment. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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12 pages, 1740 KiB  
Article
Identification of Streamline-Based Coherent Vortex Structures in a Backward-Facing Step Flow
by Fangfang Wang, Xuesong Yu, Peng Chen, Xiufeng Wu, Chenguang Sun, Zhaoyuan Zhong and Shiqiang Wu
Water 2025, 17(15), 2304; https://doi.org/10.3390/w17152304 (registering DOI) - 3 Aug 2025
Abstract
Accurately identifying coherent vortex structures (CVSs) in backward-facing step (BFS) flows remains a challenge, particularly in reconciling visual streamlines with mathematical criteria. In this study, high-resolution velocity fields were captured using particle image velocimetry (PIV) in a pressurized BFS setup. Instantaneous streamlines reveal [...] Read more.
Accurately identifying coherent vortex structures (CVSs) in backward-facing step (BFS) flows remains a challenge, particularly in reconciling visual streamlines with mathematical criteria. In this study, high-resolution velocity fields were captured using particle image velocimetry (PIV) in a pressurized BFS setup. Instantaneous streamlines reveal distinct spiral patterns, vortex centers, and saddle points, consistent with physical definitions of vortices and offering intuitive guidance for CVS detection. However, conventional vortex identification methods often fail to reproduce these visual features. To address this, an improved Q-criterion method is proposed, based on the normalization of the velocity gradient tensor. This approach enhances the rotational contribution while suppressing shear effects, leading to improved agreement in vortex position and shape with those observed in streamlines. While the normalization process alters the representation of physical vortex strength, the method bridges qualitative visualization and quantitative analysis. This streamline-consistent identification framework facilitates robust CVS detection in separated flows and supports further investigations in vortex dynamics and turbulence control. Full article
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54 pages, 506 KiB  
Article
Enhancing Complex Decision-Making Under Uncertainty: Theory and Applications of q-Rung Neutrosophic Fuzzy Sets
by Omniyyah Saad Alqurashi and Kholood Mohammad Alsager
Symmetry 2025, 17(8), 1224; https://doi.org/10.3390/sym17081224 (registering DOI) - 3 Aug 2025
Abstract
This thesis pioneers the development of q-Rung Neutrosophic Fuzzy Rough Sets (q-RNFRSs), establishing the first theoretical framework that integrates q-Rung Neutrosophic Sets with rough approximations to break through the conventional μq+ηq+νq1 constraint of existing [...] Read more.
This thesis pioneers the development of q-Rung Neutrosophic Fuzzy Rough Sets (q-RNFRSs), establishing the first theoretical framework that integrates q-Rung Neutrosophic Sets with rough approximations to break through the conventional μq+ηq+νq1 constraint of existing fuzzy–rough hybrids, achieving unprecedented capability in extreme uncertainty representation through our generalized model (Tq+Iq+Fq3). The work makes three fundamental contributions: (1) theoretical innovation through complete algebraic characterization of q-RNFRSs, including two distinct union/intersection operations and four novel classes of complement operators (with Theorem 1 verifying their involution properties via De Morgan’s Laws); (2) clinical breakthrough via a domain-independent medical decision algorithm featuring dynamic q-adaptation (q = 2–4) for criterion-specific uncertainty handling, demonstrating 90% diagnostic accuracy in validation trials—a 22% improvement over static models (p<0.001); and (3) practical impact through multi-dimensional uncertainty modeling (truth–indeterminacy–falsity), robust therapy prioritization under data incompleteness, and computationally efficient approximations for real-world clinical deployment. Full article
(This article belongs to the Special Issue The Fusion of Fuzzy Sets and Optimization Using Symmetry)
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16 pages, 2227 KiB  
Article
Physiological and Transcriptomic Mechanisms Underlying Vitamin C-Mediated Cold Stress Tolerance in Grafted Cucumber
by Panpan Yu, Junkai Wang, Xuyang Zhang, Zhenglong Weng, Kaisen Huo, Qiuxia Yi, Chenxi Wu, Sunjeet Kumar, Hao Gao, Lin Fu, Yanli Chen and Guopeng Zhu
Plants 2025, 14(15), 2398; https://doi.org/10.3390/plants14152398 (registering DOI) - 2 Aug 2025
Abstract
Cucumbers (Cucumis sativus L.) are highly sensitive to cold, but grafting onto cold-tolerant rootstocks can enhance their low-temperature resilience. This study investigates the physiological and molecular mechanisms by which exogenous vitamin C (Vc) mitigates cold stress in grafted cucumber seedlings. Using cucumber [...] Read more.
Cucumbers (Cucumis sativus L.) are highly sensitive to cold, but grafting onto cold-tolerant rootstocks can enhance their low-temperature resilience. This study investigates the physiological and molecular mechanisms by which exogenous vitamin C (Vc) mitigates cold stress in grafted cucumber seedlings. Using cucumber ‘Chiyu 505’ as the scion and pumpkin ‘Chuangfan No.1’ as the rootstock, seedlings were grafted using the whip grafting method. In the third true leaf expansion stage, seedlings were foliar sprayed with Vc at concentrations of 50, 100, 150, and 200 mg L−1. Three days after initial spraying, seedlings were subjected to cold stress (8 °C) for 3 days, with continued spraying. After that, morphological and physiological parameters were assessed. Results showed that 150 mg L−1 Vc treatment was most impactive, significantly reducing the cold damage index while increasing the root-to-shoot ratio, root vitality, chlorophyll content, and activities of antioxidant enzymes (SOD, POD, CAT). Moreover, this treatment enhanced levels of soluble sugars, soluble proteins, and proline compared to control. However, 200 mg L−1 treatment elevated malondialdehyde (MDA) content, indicating potential oxidative stress. For transcriptomic analysis, leaves from the 150 mg L−1 Vc and CK treatments were sampled at 0, 1, 2, and 3 days of cold stress. Differential gene expression revealed that genes associated with photosynthesis (LHCA1), stress signal transduction (MYC2-1, MYC2-2, WRKY22, WRKY2), and antioxidant defense (SOD-1, SOD-2) were initially up-regulated and subsequently down-regulated, as validated by qRT-PCR. Overall, we found that the application of 150 mg L−1 Vc enhanced cold tolerance in grafted cucumber seedlings by modulating gene expression networks related to photosynthesis, stress response, and the antioxidant defense system. This study provides a way for developing Vc biostimulants to enhance cold tolerance in grafted cucumbers, improving sustainable cultivation in low-temperature regions. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
11 pages, 715 KiB  
Article
One Health Approach to Trypanosoma cruzi: Serological and Molecular Detection in Owners and Dogs Living on Oceanic Islands and Seashore Mainland of Southern Brazil
by Júlia Iracema Moura Pacheco, Louise Bach Kmetiuk, Melissa Farias, Gustavo Gonçalves, Aaronson Ramathan Freitas, Leandro Meneguelli Biondo, Cristielin Alves de Paula, Ruana Renostro Delai, Cláudia Turra Pimpão, João Henrique Perotta, Rogério Giuffrida, Vamilton Alvares Santarém, Helio Langoni, Fabiano Borges Figueiredo, Alexander Welker Biondo and Ivan Roque de Barros Filho
Trop. Med. Infect. Dis. 2025, 10(8), 220; https://doi.org/10.3390/tropicalmed10080220 (registering DOI) - 2 Aug 2025
Abstract
Via a One Health approach, this study concomitantly assessed the susceptibility of humans and dogs to Trypanosoma cruzi infections on three islands and in two mainland seashore areas of southern Brazil. Human serum samples were tested using an enzyme-linked immunosorbent assay (ELISA) to [...] Read more.
Via a One Health approach, this study concomitantly assessed the susceptibility of humans and dogs to Trypanosoma cruzi infections on three islands and in two mainland seashore areas of southern Brazil. Human serum samples were tested using an enzyme-linked immunosorbent assay (ELISA) to detect anti-T. cruzi antibodies, while dog serum samples were tested using indirect fluorescent antibodies in an immunofluorescence assay (IFA). Seropositive human and dog individuals were also tested using quantitative polymerase chain reaction (qPCR) in corresponding blood samples. Overall, 2/304 (0.6%) human and 1/292 dog samples tested seropositive for T. cruzi by ELISA and IFA, respectively, and these cases were also molecularly positive for T. cruzi by qPCR. Although a relatively low positivity rate was observed herein, these cases were likely autochthonous, and the individuals may have been infected as a consequence of isolated events of disturbance in the natural peridomicile areas nearby. Such a disturbance could come in the form of a fire or deforestation event, which can cause stress and parasitemia in wild reservoirs and, consequently, lead to positive triatomines. In conclusion, T. cruzi monitoring should always be conducted in suspicious areas to ensure a Chagas disease-free status over time. Further studies should also consider entomological and wildlife surveillance to fully capture the transmission and spread of T. cruzi on islands and in seashore mainland areas of Brazil and other endemic countries. Full article
(This article belongs to the Section One Health)
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18 pages, 5391 KiB  
Article
Pharmacological Investigation of Tongqiao Jiuxin Oil Against High-Altitude Hypoxia: Integrating Chemical Profiling, Network Pharmacology, and Experimental Validation
by Jiamei Xie, Yang Yang, Yuhang Du, Xiaohua Su, Yige Zhao, Yongcheng An, Xin Mao, Menglu Wang, Ziyi Shan, Zhiyun Huang, Shuchang Liu and Baosheng Zhao
Pharmaceuticals 2025, 18(8), 1153; https://doi.org/10.3390/ph18081153 (registering DOI) - 2 Aug 2025
Abstract
Background: Acute mountain sickness (AMS) is a prevalent and potentially life-threatening condition caused by rapid exposure to high-altitude hypoxia, affecting pulmonary and neurological functions. Tongqiao Jiuxin Oil (TQ), a traditional Chinese medicine formula composed of aromatic and resinous ingredients such as sandalwood, [...] Read more.
Background: Acute mountain sickness (AMS) is a prevalent and potentially life-threatening condition caused by rapid exposure to high-altitude hypoxia, affecting pulmonary and neurological functions. Tongqiao Jiuxin Oil (TQ), a traditional Chinese medicine formula composed of aromatic and resinous ingredients such as sandalwood, agarwood, frankincense, borneol, and musk, has been widely used in the treatment of cardiovascular and cerebrovascular disorders. Clinical observations suggest its potential efficacy against AMS, yet its pharmacological mechanisms remain poorly understood. Methods: The chemical profile of TQ was characterized using UHPLC-Q-Exactive Orbitrap HRMS. Network pharmacology was applied to predict the potential targets and pathways involved in AMS. A rat model of AMS was established by exposing animals to hypobaric hypoxia (~10% oxygen), simulating an altitude of approximately 5500 m. TQ was administered at varying doses. Physiological indices, oxidative stress markers (MDA, SOD, GSH), histopathological changes, and the expression of hypoxia- and apoptosis-related proteins (HIF-1α, VEGFA, EPO, Bax, Bcl-2, Caspase-3) in lung and brain tissues were assessed. Results: A total of 774 chemical constituents were identified from TQ. Network pharmacology predicted the involvement of multiple targets and pathways. TQ significantly improved arterial oxygenation and reduced histopathological damage in both lung and brain tissues. It enhanced antioxidant activity by elevating SOD and GSH levels and reducing MDA content. Mechanistically, TQ downregulated the expression of HIF-1α, VEGFA, EPO, and pro-apoptotic markers (Bax/Bcl-2 ratio, Caspase-3), while upregulated Bcl-2, the anti-apoptotic protein expression. Conclusions: TQ exerts protective effects against AMS-induced tissue injury by improving oxygen homeostasis, alleviating oxidative stress, and modulating hypoxia-related and apoptotic signaling pathways. This study provides pharmacological evidence supporting the potential of TQ as a promising candidate for AMS intervention, as well as the modern research method for multi-component traditional Chinese medicine. Full article
(This article belongs to the Section Pharmacology)
12 pages, 1010 KiB  
Article
The Effect of cdk1 Gene Knockout on Heat Shock-Induced Polyploidization in Loach (Misgurnus anguillicaudatus)
by Hanjun Jiang, Qi Lei, Wenhao Ma, Junru Wang, Jing Gong, Xusheng Guo and Xiaojuan Cao
Life 2025, 15(8), 1223; https://doi.org/10.3390/life15081223 (registering DOI) - 2 Aug 2025
Abstract
(1) Background: Polyploid fish are highly important in increasing fish production, improving fish quality, and breeding new varieties. The loach (Misgurnus anguillicaudatus), as a naturally polyploid fish, serves as an ideal biological model for investigating the mechanisms of chromosome doubling; (2) [...] Read more.
(1) Background: Polyploid fish are highly important in increasing fish production, improving fish quality, and breeding new varieties. The loach (Misgurnus anguillicaudatus), as a naturally polyploid fish, serves as an ideal biological model for investigating the mechanisms of chromosome doubling; (2) Methods: In this study, tetraploidization in diploid loach was induced by heat shock treatment, and, for the first time, the role of the key cell cycle gene cdk1 (cyclin-dependent kinase 1) in chromosome doubling was investigated; (3) Results: The experimental results show that when eggs are fertilized for 20 min and then subjected to a 4 min heat shock treatment at 39–40 °C, this represents the optimal induction condition, resulting in a tetraploid rate of 44%. Meanwhile, the results of the cdk1 knockout model (2n cdk1−/−) constructed using CRISPR/Cas9 showed that the absence of cdk1 significantly increased the chromosome doubling efficiency of the loach. The qPCR analysis revealed that knockout of cdk1 significantly upregulated cyclin genes (ccnb3,ccnc, and ccne1), while inhibiting expression of the separase gene espl1 (p < 0.05); (4) Conclusions: During chromosome doubling in diploid loaches induced by heat shock, knocking out the cdk1 gene can increase the tetraploid induction rate. This effect may occur through downregulation of the espl1 gene. This study offers novel insights into optimizing the induced breeding technology of polyploid fish and deciphering its molecular mechanism, while highlighting the potential application of integrating gene editing with physical induction. Full article
(This article belongs to the Section Animal Science)
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23 pages, 2663 KiB  
Article
How Nanofluids May Enhance Energy Efficiency and Carbon Footprint in Buildings?
by Sylwia Wciślik
Sustainability 2025, 17(15), 7035; https://doi.org/10.3390/su17157035 (registering DOI) - 2 Aug 2025
Abstract
Nanofluids are an innovative working medium in solar hot water installations (DHWs), thanks to their increased thermal conductivity and heat transfer coefficient. The aim of this work was to assess the effect of Al2O3 nanofluids in a water–ethylene glycol base [...] Read more.
Nanofluids are an innovative working medium in solar hot water installations (DHWs), thanks to their increased thermal conductivity and heat transfer coefficient. The aim of this work was to assess the effect of Al2O3 nanofluids in a water–ethylene glycol base (40:60%) and with the addition of Tween 80 surfactant (0.2 wt%) on thermal efficiency (ε) and exergy (ηex) in a plate heat exchanger at DHW flows of 3 and 12 L/min. The numerical NTU–ε model was used with dynamic updating of thermophysical properties of nanofluids and the solution of the ODE system using the ode45 method, and the validation was carried out against the literature data. The results showed that the nanofluids achieved ε ≈ 0.85 (vs. ε ≈ 0.87 for the base fluid) and ηex ≈ 0.72 (vs. ηex ≈ 0.74), with higher entropy generation. The addition of Tween 80 reduced the viscosity by about 10–15%, resulting in a slight increase of Re and h-factor; however, the impact on ε and ηex was marginal. The environmental analysis with an annual demand of Q = 3000 kWh/year and an emission factor of 0.2 kg CO2/kWh showed that for ε < 0.87 the nanofluids increased the emissions by ≈16 kg CO2/year, while at ε ≈ 0.92, a reduction of ≈5% was possible. This paper highlights the need to optimize nanofluid viscosity and exchanger geometry to maximize energy and environmental benefits. Nowadays, due to the growing problems of global warming, the analysis of energy efficiency and carbon footprint related to the functioning of a building seems to be crucial. Full article
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12 pages, 1816 KiB  
Article
Massive Fluctuations in the Derivatives of Pair Distribution Function Minima and Maxima During the Glass Transition
by Michael I. Ojovan, Anh Khoa Augustin Lu and Dmitri V. Louzguine-Luzgin
Metals 2025, 15(8), 869; https://doi.org/10.3390/met15080869 (registering DOI) - 2 Aug 2025
Abstract
Parametric changes in the first coordination shell (FCS) of a vitreous metallic Pd42.5Cu30Ni7.5P20 alloy are analysed, aiming to confirm the identification of the glass transition temperature (Tg) via processing of XRD patterns utilising [...] Read more.
Parametric changes in the first coordination shell (FCS) of a vitreous metallic Pd42.5Cu30Ni7.5P20 alloy are analysed, aiming to confirm the identification of the glass transition temperature (Tg) via processing of XRD patterns utilising radial and pair distribution functions (RDFs and PDFs) and their evolution with temperature. The Wendt–Abraham empirical criterion of glass transition and its modifications are confirmed in line with previous works, which utilised the kink of the temperature dependences of the minima and maxima of both the PDF and the maxima of the structure factor S(q). Massive fluctuations are, however, identified near the Tg of the derivatives of the minima and maxima of the PDF and maxima of S(q), which adds value to understanding the glass transition in the system as a true second-order-like phase transformation in the non-equilibrium system of atoms. Full article
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31 pages, 3464 KiB  
Article
An Intelligent Method for C++ Test Case Synthesis Based on a Q-Learning Agent
by Serhii Semenov, Oleksii Kolomiitsev, Mykhailo Hulevych, Patryk Mazurek and Olena Chernyk
Appl. Sci. 2025, 15(15), 8596; https://doi.org/10.3390/app15158596 (registering DOI) - 2 Aug 2025
Abstract
Ensuring software quality during development requires effective regression testing. However, test suites in open-source libraries often grow large, redundant, and difficult to maintain. Most traditional test suite optimization methods treat test cases as atomic units, without analyzing the utility of individual instructions. This [...] Read more.
Ensuring software quality during development requires effective regression testing. However, test suites in open-source libraries often grow large, redundant, and difficult to maintain. Most traditional test suite optimization methods treat test cases as atomic units, without analyzing the utility of individual instructions. This paper presents an intelligent method for test case synthesis using a Q-learning agent. The agent learns to construct compact test cases by interacting with an execution environment and receives rewards based on branch coverage improvements and simultaneous reductions in test case length. The training process includes a pretraining phase that transfers knowledge from the original test suite, followed by adaptive learning episodes on individual test cases. As a result, the method requires no formal documentation or API specifications and uses only execution traces of the original test cases. An explicit synthesis algorithm constructs new test cases by selecting API calls from a learned policy encoded in a Q-table. Experiments were conducted on two open-source C++ libraries of differing API complexity and original test suite size. The results show that the proposed method can reach up to 67% test suite reduction while preserving branch coverage, confirming its effectiveness for regression test suite minimization in resource-constrained or specification-limited environments. Full article
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30 pages, 4011 KiB  
Article
Multitarget Design of Steroidal Inhibitors Against Hormone-Dependent Breast Cancer: An Integrated In Silico Approach
by Juan Rodríguez-Macías, Oscar Saurith-Coronell, Carlos Vargas-Echeverria, Daniel Insuasty Delgado, Edgar A. Márquez Brazón, Ricardo Gutiérrez De Aguas, José R. Mora, José L. Paz and Yovanni Marrero-Ponce
Int. J. Mol. Sci. 2025, 26(15), 7477; https://doi.org/10.3390/ijms26157477 (registering DOI) - 2 Aug 2025
Abstract
Hormone-dependent breast cancer, particularly in its treatment-resistant forms, remains a significant therapeutic challenge. In this study, we applied a fully computational strategy to design steroid-based compounds capable of simultaneously targeting three key receptors involved in disease progression: progesterone receptor (PR), estrogen receptor alpha [...] Read more.
Hormone-dependent breast cancer, particularly in its treatment-resistant forms, remains a significant therapeutic challenge. In this study, we applied a fully computational strategy to design steroid-based compounds capable of simultaneously targeting three key receptors involved in disease progression: progesterone receptor (PR), estrogen receptor alpha (ER-α), and HER2. Using a robust 3D-QSAR model (R2 = 0.86; Q2_LOO = 0.86) built from 52 steroidal structures, we identified molecular features associated with high anticancer potential, specifically increased polarizability and reduced electronegativity. From a virtual library of 271 DFT-optimized analogs, 31 compounds were selected based on predicted potency (pIC50 > 7.0) and screened via molecular docking against PR (PDB 2W8Y), HER2 (PDB 7JXH), and ER-α (PDB 6VJD). Seven candidates showed strong binding affinities (ΔG ≤ −9 kcal/mol for at least two targets), with Estero-255 emerging as the most promising. This compound demonstrated excellent conformational stability, a robust hydrogen-bonding network, and consistent multitarget engagement. Molecular dynamics simulations over 100 nanoseconds confirmed the structural integrity of the top ligands, with low RMSD values, compact radii of gyration, and stable binding energy profiles. Key interactions included hydrophobic contacts, π–π stacking, halogen–π interactions, and classical hydrogen bonds with conserved residues across all three targets. These findings highlight Estero-255, alongside Estero-261 and Estero-264, as strong multitarget candidates for further development. By potentially disrupting the PI3K/AKT/mTOR signaling pathway, these compounds offer a promising strategy for overcoming resistance in hormone-driven breast cancer. Experimental validation, including cytotoxicity assays and ADME/Tox profiling, is recommended to confirm their therapeutic potential. Full article
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