Emerging and Re-Emerging Viral Zoonoses

A special issue of Viruses (ISSN 1999-4915). This special issue belongs to the section "Animal Viruses".

Deadline for manuscript submissions: 31 May 2026 | Viewed by 10216

Special Issue Editors


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Guest Editor
Croatian Veterinary Institute, Savska Cesta 143, 10000 Zagreb, Croatia
Interests: emerging and re-emerging virus infections; molecular epidemiology; viral infections of animals; zoonoses

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Guest Editor
Veterinary Medicine Department, School of Science and Technologies, Comprehensive Health Research Centre (CHRC), University of Évora, 7004-516 Évora, Portugal
Interests: one health; public health microbiology; zoonotic diseases; virology
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Special Issue Information

Dear Colleagues,

Emergent viral zoonoses represent a growing global health concern, characterized by the spillover of novel or previously rare viruses from animal reservoirs into human populations. These events are driven by complex ecological, environmental, and societal changes—including deforestation, the wildlife trade, agricultural intensification, urbanization, and climate change—that increase the frequency and intensity of human–animal interactions.

Over the past few decades, we have witnessed the emergence of several high-impact zoonotic viruses such as the Ebola virus, Nipah virus, Hendra virus, SARS-CoV, MERS-CoV. Even more recently, the global spread of monkeypox virus (MPXV), traditionally confined to West and Central Africa, has demonstrated how rapidly a zoonotic virus can shift its epidemiology and transmission dynamics once introduced into new human populations. Importantly, many of these viruses display genetic plasticity, enabling their adaptation to human hosts and facilitating human-to-human transmission via respiratory droplets, bodily fluids, direct contact, or even sexual networks, as seen in the 2022 multi-country Mpox outbreak.

Emergent viral zoonoses are often associated with high case fatality rates, limited treatment options, and the absence of pre-existing immunity in human populations. The threat they pose is further compounded by the lack of effective vaccines or therapeutics for many of these viruses, challenges in their early detection, and insufficient integration between human and animal health surveillance systems.

This Special Issue of Viruses seeks to present cutting-edge research on emerging and re-emerging viral zoonoses from across a broad range of disciplines. We invite contributions that explore the following:

  • Epidemiology and outbreak investigations in both endemic and non-endemic regions;
  • The viral evolution, genomics, and molecular characterization of (re)emergent pathogens;
  • The ecology of zoonotic spillover and the role of animal reservoirs, cross-species transmission and vectors;
  • The clinical features, disease progression, and long-term outcomes in infected individuals;
  • Immunological responses and host–virus interactions;
  • Novel diagnostic tools, therapeutics, and vaccine development;
  • Public health strategies, surveillance systems, and pandemic preparedness;
  • One Health approaches integrating human, animal, and environmental health.

Special consideration will be given to manuscripts addressing infections in high-risk populations, such as immunocompromised individuals, pregnant women, children, healthcare workers, veterinarians, and those in close contact with wildlife or livestock. We also welcome reports on novel or re-emerging zoonotic viruses, particularly those associated with unusual transmission routes or evolving virulence, related to high burden of disease and threats to biodiversity/vulnerable species.

All submission formats are welcome, including original research articles, reviews, case reports, short communications, viewpoints, and editorials. The inclusion of figures, tables, and illustrative materials to support the data provided and to enhance reader engagement is encouraged.

We look forward to receiving your valuable contributions to this timely and essential collection of research, which aims to deepen our understanding of and inform future responses to emerging zoonotic viral threats.

Prof. Dr. Lorena Jemeršić
Dr. Margarida Simões
Guest Editors

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Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Viruses is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • epidemiology of emerging and re-emerging viral zoonoses
  • zoonotic spillover
  • viral evolution
  • animal reservoirs
  • zoonotic transmission
  • animals as sentinels of viral zoonoses and risk analyses
  • diagnostic novelties and early detection of viral threats
  • viral genomics and molecular epidemiology
  • viral pathogenesis
  • viral adaptation mechanisms
  • wildlife–human interface
  • monkeypox virus (mpxv)
  • influenza viruses
  • nipah virus
  • ebola/marburg virus
  • hantavirus
  • crimea-congo virus
  • vaccine development
  • therapeutic and mitigation strategies
  • climate change, biodiversity loss and infectious diseases

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Published Papers (5 papers)

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Research

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12 pages, 871 KB  
Article
First Serological Evidence of Crimean-Congo Hemorrhagic Fever Virus Infections in Croatia: A Multispecies Surveillance Approach Emphasising the Role of Sentinel Hosts
by Gorana Miletic, Ivona Coric, Snjezana Kovac, Alenka Skrinjaric, Magda Kamber Taslaman, Margarita Bozikovic, Ljubo Barbic, Viktor Masovic, Jelena Prpic, Lorena Jemersic and Vladimir Stevanovic
Viruses 2025, 17(10), 1335; https://doi.org/10.3390/v17101335 - 30 Sep 2025
Viewed by 1241
Abstract
Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne zoonotic pathogen of growing public health concern in southeastern Europe. This study provides the first serological evidence of CCHFV circulation in Croatia, based on testing 1473 serum samples from farm and companion animals, including sheep, [...] Read more.
Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne zoonotic pathogen of growing public health concern in southeastern Europe. This study provides the first serological evidence of CCHFV circulation in Croatia, based on testing 1473 serum samples from farm and companion animals, including sheep, horses, cattle, goats, dogs, and cats. A total of 109 samples (7.4%) tested positive for CCHFV antibodies using a commercially available enzyme-linked immunosorbent assay (ELISA) kit. The highest seroprevalence was recorded in sheep (28.3%), followed by horses (4.3%) and a single cat (0.5%), with no antibodies detected in cattle, goats, or dogs. Almost all seropositive animals originated from coastal and subcoastal Croatia, where Hyalomma ticks are present. Only two seropositive cases were detected in continental areas. Sheep samples from several farms in Zadar County showed intra-farm seropositivity rates of up to 85.7%, suggesting localised virus circulation likely influenced by vector distribution and farm-level practices. No viral ribonucleic acid (RNA) was detected by quantitative reverse transcription polymerase chain reaction (qRT-PCR), consistent with the transient nature of viremia in most animal hosts. These findings confirm the silent circulation of CCHFV in Croatia and reinforce the need for targeted, regionally adapted surveillance strategies that integrate multiple hosts and support early warning systems aligned with the One Health concept. Full article
(This article belongs to the Special Issue Emerging and Re-Emerging Viral Zoonoses)
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16 pages, 2236 KB  
Article
Avian Influenza Surveillance Among Migratory Birds, Poultry, and Humans Around Nansi Lake, China, 2021–2024
by Sheng Zhang, Yu-Min Liang, Dong-Mei Wang, Chao Shang, Wang-Qian Wei, Xin-Jing Zhao, Li-Bo Li, Wen-Guo Jiang, Bao-Jin Guo, Bo-Yan Jiao, Jun Ma, Yun-Bo Qiu, Yong-Biao Cui, Guo-Qiang Wang, Jin-Jin Chen, Qiang Xu, Chen-Long Lv, Feng Hong, Guo-Lin Wang and Li-Qun Fang
Viruses 2025, 17(8), 1117; https://doi.org/10.3390/v17081117 - 14 Aug 2025
Cited by 4 | Viewed by 2687
Abstract
Avian influenza A viruses (AIVs) pose a significant pandemic threat due to their cross-species transmission potential. However, AIV surveillance at the critical “migratory birds–poultry-exposed population” interface remains limited. Between 2021 and 2024, we implemented a prospective One Health surveillance program around Nansi Lake, [...] Read more.
Avian influenza A viruses (AIVs) pose a significant pandemic threat due to their cross-species transmission potential. However, AIV surveillance at the critical “migratory birds–poultry-exposed population” interface remains limited. Between 2021 and 2024, we implemented a prospective One Health surveillance program around Nansi Lake, monitoring AIVs in migratory birds, poultry, and environmental samples, as well as serological investigations against representative AIVs among migratory birds or poultry-exposed subjects. AIVs were detected in 2.1% (30/1417) of migratory bird samples and 10.2% (100/978) of poultry samples. Among these, we identified ten highly pathogenic avian influenza (HPAI) H5 subtype viruses, one HPAI H7N9 virus, and five low pathogenic avian influenza (LPAI) H9N2 viruses. Phylogenetic analysis revealed evidence of frequent genomic reassortment events involving H5 subtype viruses among migratory birds, poultry, and humans. Serological investigation also suggested that both migratory birds and the poultry-exposed population had a higher risk of getting AIV infection than the general control population, especially against the H9N2 virus. Our study emphasizes the importance of strengthening continuous prospective surveillance of AIVs among migratory birds, poultry, and their exposed individuals to prevent and control potential outbreaks. Full article
(This article belongs to the Special Issue Emerging and Re-Emerging Viral Zoonoses)
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12 pages, 683 KB  
Article
Mosquito Species Diversity and Circulation of Mosquito-Borne Viruses in Selected Provinces of Central Vietnam
by Margarita R. Popova, Alena A. Sharova, Anna S. Gladkikh, Tatiana V. Arbuzova, Ekaterina O. Klyuchnikova, Valeriya A. Sbarzaglia, Nadezhda A. Tsyganova, Dmitry D. Naydenov, Anastasia S. Gritseva, Edward S. Ramsay, Regina R. Baimova, Islam A. Karmokov, Ekaterina. G. Riabiko, Nikolai K. Tokarevich, Nguyen T. Dong, Bui T. Phu, Vu T. Phan, Do T. Hung, Trinh C. Thuc and Vladimir G. Dedkov
Viruses 2025, 17(7), 905; https://doi.org/10.3390/v17070905 - 26 Jun 2025
Cited by 2 | Viewed by 2792
Abstract
Arboviruses, including but not limited to dengue virus (DENV), Zika virus (ZIKV), and chikungunya virus (CHIKV), pose a significant global threat to human health. The transmission of DENV, ZIKV, and CHIKV is facilitated by mosquitoes belonging to the genus Aedes, which are [...] Read more.
Arboviruses, including but not limited to dengue virus (DENV), Zika virus (ZIKV), and chikungunya virus (CHIKV), pose a significant global threat to human health. The transmission of DENV, ZIKV, and CHIKV is facilitated by mosquitoes belonging to the genus Aedes, which are prevalent in both urban and rural regions of Vietnam. In 2023 an investigation into the population of mosquitoes was conducted in a number of provinces located within the central region of Vietnam. A total of 12,546 mosquitoes were collected during the study. The mosquitoes collected comprised the genera Culex spp., Aedes spp., Anopheles spp., and Armigeres spp. The Aedes spp. mosquitoes were predominant, being collected in 908 pools. These were then examined by RT-qPCR for the detection of DENV, ZIKV, and CHIKV. DENV viral RNA was detected in 92 mosquito pools, ZIKV was detected in 1 mosquito pool, and CHIKV was not detected. The typing of samples containing DENV RNA was carried out. It is evident from the results of the typing process that three distinct types of DENV have been identified. The three main dengue virus types are DENV-1, DENV-2, and DENV-4. Full article
(This article belongs to the Special Issue Emerging and Re-Emerging Viral Zoonoses)
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Review

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26 pages, 3426 KB  
Review
The Emerging Threat of Monkeypox: An Updated Overview
by Galal Yahya, Nashwa H. Mohamed, Al-Hassan Soliman Wadan, Esteban M. Castro, Amira Kamel, Ahmed A. Abdelmoaty, Maha E. Alsadik, Luis Martinez-Sobrido and Ahmed Mostafa
Viruses 2026, 18(1), 69; https://doi.org/10.3390/v18010069 - 3 Jan 2026
Cited by 1 | Viewed by 1781
Abstract
Monkeypox (MPOX) is an emerging zoonotic disease caused by monkeypox virus (MPXV), an orthopoxvirus closely related to smallpox. Initially confined to endemic regions in Central and West Africa, MPOX has recently gained global significance with outbreaks reported across multiple continents. MPXV is maintained [...] Read more.
Monkeypox (MPOX) is an emerging zoonotic disease caused by monkeypox virus (MPXV), an orthopoxvirus closely related to smallpox. Initially confined to endemic regions in Central and West Africa, MPOX has recently gained global significance with outbreaks reported across multiple continents. MPXV is maintained in animal reservoirs but is increasingly transmitted from person to person, facilitated by close contact, respiratory droplets, and, in some cases, sexual transmission. Clinically, MPOX presents with fever, lymphadenopathy, and a characteristic vesiculopustular rash, though atypical manifestations have been observed in recent outbreaks, complicating diagnosis. Laboratory confirmation relies on molecular testing, while differential diagnosis must consider varicella, herpes, and other vesicular illnesses. Therapeutic options remain limited; supportive care is the cornerstone of management, but antivirals such as tecovirimat and brincidofovir, as well as smallpox vaccines, have shown efficacy in mitigating disease severity and preventing infection. The unprecedented global outbreak has underscored the importance of surveillance, rapid diagnostics, and coordinated public health responses to contain transmission. This review provides an overview of epidemiology, virology, clinical manifestations, modes of transmission, available diagnostics, and prophylactic and therapeutic strategies against MPOX. We also discuss the role of animal reservoirs, viral evolution, and human-to-human transmission in shaping the dynamics of recent MPOX outbreaks. By summarizing the latest evidence, this review aims to inform clinicians, researchers, and policymakers about key aspects of MPOX biology, clinical management, and prevention, while identifying gaps that warrant future investigation for the control of this and potentially other emerging zoonotic-related pathogens with an impact on human health. Full article
(This article belongs to the Special Issue Emerging and Re-Emerging Viral Zoonoses)
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Other

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14 pages, 5439 KB  
Brief Report
Emergence and Phylodynamics of Influenza D Virus in Northeast China Reveal Sporadic Detection and Predominance of the D/Yamagata/2019 Lineage in Cattle
by Hongjin Li, Weiwen Yan, Xinxin Liu, Bing Gao, Jiahuizi Peng, Feng Jiang, Qixun Cui, Che Song, Xianyuan Kong, Hongli Li, Tobias Stoeger, Abdul Wajid, Aleksandar Dodovski, Chao Gao, Maria Inge Lusida, Claro N. Mingala, Dmitry B. Andreychuk and Renfu Yin
Viruses 2026, 18(1), 93; https://doi.org/10.3390/v18010093 - 9 Jan 2026
Viewed by 906
Abstract
Influenza D virus (IDV), an emerging orthomyxovirus with zoonotic potential, infects diverse hosts, causes respiratory disease, and remains poorly characterized in China despite its global expansion. From October 2023 to January 2025, we collected 563 nasal swabs from cattle across 28 farms in [...] Read more.
Influenza D virus (IDV), an emerging orthomyxovirus with zoonotic potential, infects diverse hosts, causes respiratory disease, and remains poorly characterized in China despite its global expansion. From October 2023 to January 2025, we collected 563 nasal swabs from cattle across 28 farms in Jilin Province, Northeast China, and identified seven IDV-positive samples (1.2%), recovering two viable isolates (JL/YB2024 and JL/CC2024). Full-genome sequencing revealed complete, stable seven-segment genomes with high nucleotide identity (up to 99.9%) to contemporary Chinese D/Yamagata/2019 strains and no evidence of reassortment. Maximum-likelihood and time-resolved Bayesian phylogenies of 231 global hemagglutinin-esterase-fusion (HEF) sequences placed the Jilin isolates within the East Asian D/Yamagata/2019 clade and traced their most recent common ancestor to approximately 2017 (95% highest posterior density: 2016–2018), suggesting a cross-border introduction likely associated with regional cattle movement. No IDV was detected in parallel surveillance of swine, underscoring cattle as the principal reservoir and amplifying host. Bayesian skyline analysis demonstrated a marked decline in global IDV genetic diversity during 2020–2022, coinciding with livestock-movement restrictions imposed during the COVID-19 pandemic. Collectively, these findings indicate that IDV circulation in China is sporadic and geographically localized, dominated by the D/Yamagata/2019 lineage, and shaped by multiple independent incursions rather than a single emergence. Both the incorporation of IDV diagnostics into routine bovine respiratory disease surveillance and cattle-import quarantine programs, and the adoption of a One Health framework to monitor potential human spillover and future viral evolution, were recommend. Full article
(This article belongs to the Special Issue Emerging and Re-Emerging Viral Zoonoses)
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