From Commensal to Pathogen: The Dynamics of Host–Microbiome Interactions

A special issue of Pathogens (ISSN 2076-0817).

Deadline for manuscript submissions: 20 July 2026

Special Issue Editor


E-Mail Website
Guest Editor
1. The Kids Research Institute Australia, Perth, Australia
2. School of Molecular Sciences, The University of Western Australia, Perth, Australia
Interests: host-microbiome interactions; omics; multi-omics; integromics; respiratory diseases
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

This Special Issue, “From Commensal to Pathogen: The Dynamics of Host–Microbiome Interactions,” focuses on understanding how microbial communities—spanning bacteria, fungi, and viruses—interact with the host to influence health and disease. It aims to bring together research on both single-kingdom and multi-kingdom microbiome analyses, highlighting how individual or combined microbial taxa contribute to immune regulation, infection susceptibility, inflammation, and disease progression.

The scope of this issue includes studies employing experimental, computational, and epidemiological approaches to characterize microbiome dynamics and their impact on host physiology. We particularly encourage integrative and longitudinal studies leveraging multi-omics technologies, as well as those examining ecological transitions from commensalism to pathogenicity and their implications for population health.

This Special Issue invites researchers to contribute original research articles, reviews, and short communications that advance our understanding of the host–microbiome interface. Together, these contributions will provide new insights into how microbial communities and their interactions with the host shape both health and disease.

Dr. Patricia Agudelo-Romero
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Pathogens is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2200 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • host–microbiome interactions
  • single- and multi-kingdom microbiome (bacteria, fungi, viruses)
  • microbiome dynamics and dysbiosis
  • multi-omics and systems biology
  • microbial ecology and disease

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • Reprint: MDPI Books provides the opportunity to republish successful Special Issues in book format, both online and in print.

Further information on MDPI's Special Issue policies can be found here.

Published Papers

This special issue is now open for submission.
Back to TopTop