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Biophysica, Volume 5, Issue 4

2025 December - 21 articles

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Articles (21)

  • Article
  • Open Access
464 Views
17 Pages

15 December 2025

We investigated the roles and regulation of contractile and sodium ion transporter proteins in the pathogenesis of diarrhea in the acute ulcerative colitis. Acute ulcerative colitis was induced in male Sprague-Dawley rats using dextran sulfate sodium...

  • Review
  • Open Access
924 Views
25 Pages

Integrating AI with Cellular and Mechanobiology: Trends and Perspectives

  • Sakib Mohammad,
  • Md Sakhawat Hossain and
  • Sydney L. Sarver

14 December 2025

Mechanobiology explores how physical forces and cellular mechanics influence biological processes. This field has experienced rapid growth, driven by advances in high-resolution imaging, micromechanical testing, and computational modeling. At the sam...

  • Article
  • Open Access
717 Views
14 Pages

Forces exerted by cells due to their internal contractility play fundamental roles in a host of processes, including adhesion, migration, survival and differentiation. Traction force microscopy (TFM) enables the determination of forces exerted by cel...

  • Article
  • Open Access
532 Views
22 Pages

Estimation and Classification of Coffee Plant Water Potential Using Spectral Reflectance and Machine Learning Techniques

  • Deyvis Cabrini Teixeira Delfino,
  • Danton Diego Ferreira,
  • Margarete Marin Lordelo Volpato,
  • Vânia Aparecida Silva,
  • Renan Teixeira Delfino,
  • Christiano Sousa Machado de Matos and
  • Meline de Oliveira Santos

Water potential is an important indicator used to study water relations in plants, as it reflects the level of hydration in their tissues. There are different numerical variables that describe plant properties and can be acquired from leaf reflectanc...

  • Article
  • Open Access
1 Citations
737 Views
11 Pages

A rapid, colorimetric sensor for histamine detection is presented using citrate-stabilized gold nanoparticles enhanced with Cu2+ coordination. The sensing mechanism involves dual recognition: protonated histamine first adsorbs electrostatically onto...

  • Communication
  • Open Access
431 Views
7 Pages

Membrane Depth Measurements of E Protein by 2H ESEEM Spectroscopy in Lipid Bilayers

  • Andrew K. Morris,
  • Robert M. McCarrick and
  • Gary A. Lorigan

26 November 2025

A topological analysis was performed by taking ESEEM measurements of site-specifically labeled E protein from SARS-CoV-2. The intensity of deuterium modulation arising from either deuterated solvent or deuterated lipid acyl chains revealed exposure t...

  • Review
  • Open Access
1,041 Views
25 Pages

21 November 2025

Protein droplets exhibit complex self-assembly and deposition behaviors driven by evaporation, which has attracted increasing attention in recent years. Under evaporation, limited volume and locally concentrated protein solutions can undergo liquid&n...

  • Article
  • Open Access
807 Views
26 Pages

18 November 2025

We present a proof-of-concept study using a laser trapping (LT) approach to characterize hemoglobin variants through controlled dielectric breakdown of red blood cell membranes. Using a 1064 nm infrared laser, we analyzed 62 cells from each of four h...

  • Article
  • Open Access
1,114 Views
18 Pages

18 November 2025

The combination of antimicrobial agents with different mechanisms of action is an important step in the fight against drug-resistant microorganisms. In this study, the interaction of the lysozyme enzyme with ampicillin and colistin was investigated....

  • Article
  • Open Access
968 Views
15 Pages

12 November 2025

Early and accurate diagnosis of Alzheimer’s disease (AD) is critical for patient outcomes yet presents a significant clinical challenge. This study evaluates the effectiveness of four machine learning models—Logistic Regression, Random Fo...

  • Article
  • Open Access
1,021 Views
15 Pages

10 November 2025

Fluorescent proteins find application as biocompatible, genetically encoded labels for visualization of living organisms tissues. Green fluorescent proteins (GFPs) are the most diverse, but proteins with red fluorescence have advantages, such as lowe...

  • Review
  • Open Access
1,437 Views
19 Pages

Druggable Ensembles of Aβ and Tau: Intrinsically Disordered Proteins Biophysics, Liquid–Liquid Phase Separation and Multiscale Modeling for Alzheimer’s

  • Kunal Bhattacharya,
  • Pukar Khanal,
  • Jagdish Chand,
  • Nongmaithem Randhoni Chanu,
  • Dibyajyoti Das and
  • Atanu Bhattacharjee

Alzheimer’s disease is driven by multiple molecular drivers, including the pathological behavior of two intrinsically disordered proteins, amyloid-β (Aβ) and tau, whose aggregation is regulated by sequence-encoded ensembles and liquid...

  • Article
  • Open Access
697 Views
12 Pages

Cytoskeletal Prestress Regulates RIG-I-Mediated Innate Immunity

  • Arpan Roy,
  • Sydney Sarver,
  • Jarod Beights,
  • Sean Brennan,
  • Sazid Noor Rabi,
  • Sakib Mohammad,
  • Kyu Young Han,
  • Sabrina Nilufar and
  • Farhan Chowdhury

Innate immunity is the body’s first line of defense for mounting robust antiviral signaling. However, the role of cytoskeletal prestress, a hallmark of cellular mechanotransduction, in regulating innate immune pathways such as retinoic acid-ind...

  • Article
  • Open Access
731 Views
14 Pages

Distinct Thermal Response of SARS-CoV-2 Spike Proteins S1 and S2 by Coarse-Grained Simulations

  • Pornthep Sompornpisut,
  • Linh Truong Hoai,
  • Panisak Boonamnaj,
  • Brian G. Olson and
  • Ras B. Pandey

Large-scale computer simulations were employed to investigate the conformational response of the spike protein components S1 and S2 using a coarse-grained model. Temperature was systematically varied to assess the balance between stabilizing residue&...

  • Article
  • Open Access
1 Citations
1,831 Views
21 Pages

Comprehensive Experimental Analysis of Tear Fluid Composition and Structure by Using Novel Physical Methods with Diagnostic Potential for Inflammatory Diseases

  • Daria Kondrakhova,
  • Vladimíra Tomečková,
  • Oleksandr Dobrozhan,
  • Ondrej Milkovič,
  • Hoydoo You,
  • Tatiana Kimáková and
  • Vladimír Komanický

This study explored the use of physical methods, namely X-ray diffraction, atomic force microscopy, and energy-dispersive X-ray spectroscopy, to analyze the structure and composition of tear fluid desiccates. Tear samples were collected from patients...

  • Review
  • Open Access
1,241 Views
15 Pages

Computational Modeling Approaches for Optimizing Microencapsulation Processes: From Molecular Dynamics to CFD and FEM Techniques

  • Karen Isela Vargas-Rubio,
  • Efrén Delgado,
  • Cristian Patricia Cabrales-Arellano,
  • Claudia Ivette Gamboa-Gómez and
  • Damián Reyes-Jáquez

Microencapsulation is a fundamental technology for protecting active compounds from environmental degradation by factors such as light, heat, and oxygen. This process significantly improves their stability, bioavailability, and shelf life by entrappi...

  • Article
  • Open Access
878 Views
17 Pages

Isolation of an Anti-hG-CSF Nanobody and Its Application in Quantitation and Rapid Detection of hG-CSF in Pharmaceutical Testing

  • Qiang Ma,
  • Liuqiang Zhu,
  • Xiang Li,
  • Dening Pei,
  • Lei Yu,
  • Xinchang Shi,
  • Yong Zhou,
  • Zhihao Fu,
  • Chenggang Liang and
  • Junzhi Wang
  • + 1 author

Human granulocyte colony-stimulating factor (hG-CSF) is primarily used to treat neutropenia induced by cancer chemotherapy and bone marrow transplantation. The current identification test for hG-CSF relies on Western blot (WB), a labor-intensive and...

  • Article
  • Open Access
745 Views
14 Pages

Follow-Up of APSified–BMO-Based Retinal Microcirculation in Patients with Post-COVID-19 Syndrome

  • Cornelius Rosenkranz,
  • Marianna Lucio,
  • Marion Ganslmayer,
  • Thomas Harrer,
  • Jakob Hoffmanns,
  • Charlotte Szewczykowski,
  • Thora Schröder,
  • Franziska Raith,
  • Stephanie Zellinger and
  • Bettina Hohberger
  • + 5 authors

Post-COVID-19 syndrome (PCS) is a multifactorial disorder comprising different subgroups. Our study aimed to investigate the longitudinal changes in retinal microcirculation in PCS patients. Eighty PCS patients were recruited at the Department of Oph...

  • Review
  • Open Access
1 Citations
2,029 Views
16 Pages

Effect of Microgravity and Space Radiation Exposure on Human Oral Health: A Systematic Review

  • Shahnawaz Khijmatgar,
  • Matteo Pellegrini,
  • Martina Ghizzoni and
  • Massimo Del Fabbro

29 September 2025

A systematic review was conducted to assess the effects of microgravity and space radiation on astronauts’ oral health. This review aimed to determine if these conditions increase the risk of dental and periodontal diseases, identify pre-missio...

  • Review
  • Open Access
4 Citations
2,967 Views
18 Pages

26 September 2025

Myelin is a membranous structure critically important for human health. Historically, it was believed that myelin remained largely unchanged in the adult brain. However, recent research has shown that myelin is remarkably dynamic, capable of adjustin...

  • Review
  • Open Access
1,727 Views
38 Pages

AI-Enhanced Morphological Phenotyping in Humanized Mouse Models: A Transformative Approach to Infectious Disease Research

  • Asim Muhammad,
  • Xin-Yu Zheng,
  • Hui-Lin Gan,
  • Yu-Xin Guo,
  • Jia-Hong Xie,
  • Yan-Jun Chen and
  • Jin-Jun Chen

24 September 2025

Humanized mouse models offer human-specific platforms for investigating complex host–pathogen interactions, addressing shortcomings of conventional preclinical models that often fail to replicate human immune responses accurately. This integrat...

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Biophysica - ISSN 2673-4125