Isolation and Molecular Characterization of Swine Parainfluenza Virus 5 from Piglets Co-Infected with PEDV
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Cells and Clinical Samples
2.2. Virus Isolation and Identification
2.3. Phylogenetic Analysis and Sequence Alignment
3. Results
3.1. Isolation and Identification of PIV5
3.2. Phylogenetic Analysis
3.3. Sequence Identity and Alignment Analysis
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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No. | Strain | GenBank No. | Year | Host | Country | SC2024 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
WGS | NP | F | HN | |||||||||
nt (%) | nt (%) | aa (%) | nt (%) | aa (%) | nt (%) | aa (%) | ||||||
GX2020 | OQ994985.1 | 2020 | Swine | China | 97.2 | 97.6 | 98.2 | 97.5 | 97.3 | 96.6 | 96.5 | |
JX | MT890700.1 | 2015 | Swine | China | 99.8 | 99.9 | 99.8 | 99.8 | 99.5 | 99.8 | 100 | |
HuB/YC | MT890699.1 | 2015 | Swine | China | 99.8 | 99.8 | 99.8 | 99.8 | 99.5 | 99.9 | 100 | |
JS17 | OR888917.1 | 2017 | Swine | China | 99.9 | 99.9 | 99.6 | 99.9 | 99.8 | 100 | 100 | |
LZ-1 | PP189887.1 | 2021 | Swine | China | 98.8 | 99.2 | 98.6 | 99.1 | 98.4 | 98.9 | 97.9 | |
HLJ | OK505006.1 | 2020 | Swine | China | 99.9 | 99.8 | 99.6 | 99.9 | 99.8 | 99.8 | 99.8 | |
KNU-11 | KC852177.1 | 2011 | Swine | South Korea | 98.7 | 99.1 | 98.4 | 99.0 | 98.2 | 99.1 | 98.4 | |
T434 | MK423237.1 | 2016 | Swine | South Korea | 96.6 | 96.6 | 97.6 | 95.8 | 94.9 | 97.5 | 97.3 | |
IND/MZ/3013814 | MW273369.1 | 2017 | Swine | India | 99.6 | 99.7 | 99.4 | 99.6 | 98.9 | 99.5 | 98.9 | |
IND/MZ/3013789 | MW273368.1 | 2017 | Swine | India | 99.6 | 99.7 | 99.4 | 99.6 | 98.9 | 99.5 | 98.9 | |
SER | JQ743328.1 | 1998 | Swine | Germany | 99.0 | 99.5 | 99.4 | 99.1 | 98.4 | 99.4 | 98.9 | |
L | MT160087.1 | 2017 | Human | China | 97.3 | 97.8 | 98.4 | 97.3 | 96.9 | 96.8 | 96.5 | |
LN | JQ743324.1 | 1980 | Human | United Kingdom | 98.0 | 98.1 | 98.6 | 98.1 | 97.8 | 97.8 | 97.9 | |
MIL | JQ743326.1 | 1980 | Human | United Kingdom | 98.0 | 98.0 | 98.6 | 98.2 | 98.0 | 97.8 | 97.9 | |
DEN | JQ743322.1 | 1980 | Human | United Kingdom | 98.1 | 98.2 | 99.0 | 98.2 | 98.0 | 97.9 | 98.1 | |
CPIV-HeN0718 | KY114804.1 | 2015 | Canine | China | 96.9 | 96.8 | 98.2 | 96.6 | 96.0 | 97.7 | 97.5 | |
1168-1 | KC237064.1 | 2009 | Canine | South Korea | 99.8 | 99.9 | 98.8 | 99.7 | 99.1 | 99.9 | 99.6 | |
D277 | KC237065.1 | 2015 | Canine | South Korea | 97.1 | 97.0 | 98.0 | 96.6 | 96.2 | 97.8 | 97.5 | |
HLJ-W | OQ348510.1 | 2016 | Bovine | China | 99.8 | 99.9 | 99.8 | 99.6 | 98.4 | 99.8 | 99.8 | |
PV5-BC14 | KM067467.1 | 2015 | Bovine | China | 98.9 | 99.3 | 99.2 | 99.1 | 98.4 | 99.3 | 98.6 | |
CH19-MMH | MN735204.1 | 1998 | Bovine | Switzerland | 97.7 | 98.1 | 97.6 | 97.7 | 97.3 | 97.8 | 97.5 | |
CAN | MH362816.1 | 2018 | Pangolin | China | 99.8 | 99.9 | 99.8 | 99.9 | 99.8 | 99.8 | 99.6 | |
PIV5-GD18 | MG921602.1 | 2017 | Pangolin | China | 99.8 | 99.9 | 99.8 | 99.9 | 99.8 | 99.8 | 99.6 | |
PIV5-SR | KY685075.1 | 2015 | Tiger | China | 99.7 | 99.7 | 99.2 | 99.8 | 99.8 | 99.9 | 99.8 | |
HMZ | MH370862.1 | 2015 | Tiger | China | 99.8 | 99.8 | 99.6 | 99.9 | 99.6 | 99.9 | 99.8 | |
XJ033 | MN604146.1 | 2018 | Equine | China | 97.4 | 98.0 | 98.6 | 97.6 | 97.5 | 96.9 | 96.6 | |
W3A | AF052755.1 | 1956 | Simian | USA | 98.7 | 99.2 | 99.2 | 98.6 | 98.1 | 98.4 | 97.5 | |
ZJQ-221 | KX100034.1 | 2018 | Lesser panda | China | 99.8 | 99.7 | 99.6 | 99.9 | 99.8 | 99.8 | 99.8 | |
HB01 | MT124463.1 | 2019 | Snake | China | 98.9 | 99.5 | 99.4 | 99.1 | 98.4 | 99.2 | 98.6 | |
Heilongjiang-PIV5 | MW051776.1 | 2019 | Tick | China | 99.8 | 99.8 | 99.6 | 99.8 | 99.5 | 100 | 100 |
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Ma, Y.; Chen, X.; Ma, M.; Gao, X.; Song, R.; Yi, Y.; Wang, Y.; Niu, S.; Zhao, Y.; Tian, W.; et al. Isolation and Molecular Characterization of Swine Parainfluenza Virus 5 from Piglets Co-Infected with PEDV. Vet. Sci. 2025, 12, 676. https://doi.org/10.3390/vetsci12070676
Ma Y, Chen X, Ma M, Gao X, Song R, Yi Y, Wang Y, Niu S, Zhao Y, Tian W, et al. Isolation and Molecular Characterization of Swine Parainfluenza Virus 5 from Piglets Co-Infected with PEDV. Veterinary Sciences. 2025; 12(7):676. https://doi.org/10.3390/vetsci12070676
Chicago/Turabian StyleMa, Yuling, Xinxin Chen, Mengyao Ma, Xiaolong Gao, Ruoqi Song, Yue Yi, Ying Wang, Sheng Niu, Yujun Zhao, Wenxia Tian, and et al. 2025. "Isolation and Molecular Characterization of Swine Parainfluenza Virus 5 from Piglets Co-Infected with PEDV" Veterinary Sciences 12, no. 7: 676. https://doi.org/10.3390/vetsci12070676
APA StyleMa, Y., Chen, X., Ma, M., Gao, X., Song, R., Yi, Y., Wang, Y., Niu, S., Zhao, Y., Tian, W., Ren, J., & Yan, F. (2025). Isolation and Molecular Characterization of Swine Parainfluenza Virus 5 from Piglets Co-Infected with PEDV. Veterinary Sciences, 12(7), 676. https://doi.org/10.3390/vetsci12070676