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Proteomes, Volume 13, Issue 1

March 2025 - 12 articles

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Articles (12)

  • Review
  • Open Access
4 Citations
4,424 Views
17 Pages

Proteomics of Extracellular Vesicles: Recent Updates, Challenges and Limitations

  • Mohini Singh,
  • Prashant Kumar Tiwari,
  • Vivek Kashyap and
  • Sanjay Kumar

Extracellular vesicles (EVs) are lipid-bound vesicles secreted by cells, including exosomes, microvesicles, and apoptotic bodies. Proteomic analyses of EVs, particularly in relation to cancer, reveal specific biomarkers crucial for diagnosis and ther...

  • Article
  • Open Access
3 Citations
1,793 Views
30 Pages

17 February 2025

Acute myeloid leukemia (AML) is an aggressive bone marrow malignancy that can be cured only by intensive chemotherapy possibly combined with allogeneic stem cell transplantation. We compared the pretreatment proteomic profiles of AML cells derived fr...

  • Technical Note
  • Open Access
2 Citations
1,239 Views
17 Pages

17 February 2025

Background: The interaction network between the human host proteins and the proteins of the gut bacteria is essential for the establishment of human health, and its dysregulation directly contributes to disease development. Despite its great importan...

  • Article
  • Open Access
1,506 Views
25 Pages

Systems Biology of Recombinant 2G12 and 353/11 mAb Production in CHO-K1 Cell Lines at Phosphoproteome Level

  • Eldi Sulaj,
  • Felix L. Sandell,
  • Linda Schwaigerlehner,
  • Gorji Marzban,
  • Juliane C. Dohm and
  • Renate Kunert

10 February 2025

Background: Chinese hamster ovary (CHO) cells are extensively used in the pharmaceutical industry for producing complex proteins, primarily because of their ability to perform human-like post-translational modifications. However, the efficiency of hi...

  • Article
  • Open Access
1,530 Views
26 Pages

Identifying Endogenous Proteins of Perennial Ryegrass (Lolium perenne) with Ex Vivo Antioxidant Activity

  • Kathrine Danner Aakjær Pedersen,
  • Line Thopholm Andersen,
  • Mads Heiselberg,
  • Camilla Agerskov Brigsted,
  • Freja Lyngs Støvring,
  • Louise Mailund Mikkelsen,
  • Sofie Albrekt Hansen,
  • Christian Enrico Rusbjerg-Weberskov,
  • Mette Lübeck and
  • Simon Gregersen Echers

Background: During the initial steps of green biorefining aimed at protein recovery, endogenous proteins and enzymes, along with, e.g., phytochemical constituents, are decompartmentalized into a green juice. This creates a highly dynamic environment...

  • Article
  • Open Access
1,557 Views
21 Pages

Differential Signaling Pathways Identified in Aqueous Humor, Anterior Capsule, and Crystalline Lens of Age-Related, Diabetic, and Post-Vitrectomy Cataract

  • Christina Karakosta,
  • Martina Samiotaki,
  • Anastasios Bisoukis,
  • Konstantinos I. Bougioukas,
  • George Panayotou,
  • Dimitrios Papaconstantinou and
  • Marilita M. Moschos

Background: The purpose of this study was to detect proteomic alterations and corresponding signaling pathways involved in the formation of age-related cataract (ARC), diabetic cataract (DC), and post-vitrectomy cataract (PVC). Methods: Three sample...

  • Article
  • Open Access
3 Citations
3,454 Views
20 Pages

DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance

  • Shantanu Gupta,
  • Daner A. Silveira,
  • José Carlos M. Mombach and
  • Ronaldo F. Hashimoto

The tumor suppressor p53, in its wild-type form, plays a central role in cellular homeostasis by regulating senescence, apoptosis, and autophagy within the DNA damage response (DDR). Recent findings suggest that wild-type p53 also governs ferroptosis...

  • Article
  • Open Access
1,411 Views
17 Pages

Identification of Proteoforms Related to Nelumbo nucifera Flower Petaloid Through Proteogenomic Strategy

  • Zhongyuan Lin,
  • Jiantao Shu,
  • Yu Qin,
  • Dingding Cao,
  • Jiao Deng and
  • Pingfang Yang

Nelumbo nucifera is an aquatic plant with a high ornamental value due to its flower. Despite the release of several versions of the lotus genome, its annotation remains inefficient, which makes it difficult to obtain a more comprehensive knowledge wh...

  • Article
  • Open Access
1 Citations
2,916 Views
26 Pages

Novel Integration of Spatial and Single-Cell Omics Data Sets Enables Deeper Insights into IPF Pathogenesis

  • Fei Wang,
  • Liang Jin,
  • Xue Wang,
  • Baoliang Cui,
  • Yingli Yang,
  • Lori Duggan,
  • Annette Schwartz Sterman,
  • Sarah M. Lloyd,
  • Lisa A. Hazelwood and
  • Neha Chaudhary
  • + 4 authors

Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease characterized by repetitive alveolar injuries with excessive deposition of extracellular matrix (ECM) proteins. A crucial need in understanding IPF pathogenesis is identifying cell typ...

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