Taxonomic Novelties of Woody Litter Fungi (Didymosphaeriaceae, Pleosporales) from the Greater Mekong Subregion
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection, Morphological Observation, and Fungal Isolation
2.2. DNA Extraction, PCR Amplification, and Sequencing
2.3. Phylogenetic Analyses
Taxon | Strain Number | GenBank Accession Numbers | Reference | |||
---|---|---|---|---|---|---|
SSU | LSU | ITS | tef1-α | |||
Alloconiothyrium aptrootii | CBS 980.95 T | JX496121 | JX496234 | NA | NA | [28] |
A. aptrootii | CBS 981.95 T | JX496122 | JX496235 | NA | NA | [28] |
A. camelliae | NTUCC 17-032-1 T | MT112294 | MT071270 | MT071221 | MT232967 | [63] |
A. camelliae | NTUCC 17-032-2 | MT112295 | MT071271 | MT071222 | MT232965 | [63] |
A. camelliae | NTUCC 17-032-3 | MT112296 | MT071272 | MT071223 | MT232966 | [63] |
A. encephalarti | CPC: 35980 | MN562102 | MN567610 | NA | NA | [63] |
Austropleospora archidendri | MFLUCC 17-2429 | MK347757 | MK347974 | MK347863 | MK360044 | [33] |
A. archidendri | CBS 168.77 | NA | JX496162 | JX496049 | NA | [28] |
A. archidendri | KUMCC 21-0680 | OP059006 | OP059055 | OP058964 | OP135941 | This study |
A. keteleeriae | MFLUCC 18-1551 T | MK347802 | MK348021 | MK347910 | MK360045 | [33] |
A. ochracea | KUMCC 20-0020 T | MT799859 | MT799860 | MT808321 | MT872714 | [30] |
A. osteospermi | BRIP51628 | FJ481946 | NA | NA | NA | [64] |
Bambusistroma didymosporum | MFLU 15-0057 T | KP761733 | KP761730 | KP761737 | KP761727 | [65] |
B. didymosporum | MFLU 15-0058 | KP761734 | KP761731 | KP761738 | KP761728 | [65] |
Bimuria novae-zelandiae | CBS 107.79 T | MH861181 | AY016356 | AY016338 | DQ471087 | [66] |
Chromolaenicola chiangraiensis | MFLUCC 17-1493 T | MN325017 | MN325005 | MN325011 | MN335650 | [39] |
C. clematidis | MFLUCC 17-2075 T | MT310601 | MT214554 | MT226671 | NA | [67] |
C. lampangensis | MFLUCC 17-1462 T | MN325016 | MN325004 | MN325010 | MN335649 | [39] |
C. thailandensis | MFLUCC 17-1510 T | MN325018 | MN325006 | MN325012 | MN335651 | [39] |
C. thailandensis | MFLUCC 17-1475 | MN325019 | MN325007 | MN325013 | MN335652 | [39] |
C. nanensis | MFLUCC 17-1473 T | MN325015 | MN325003 | MN325009 | MN335648 | [39] |
C. nanensis | MFLUCC 17-1477 | MN325014 | MN325002 | MN325008 | MN335647 | [39] |
C. siamensis | MFLUCC 17-2527 T | NR_163337 | NG_066311 | NA | NA | [33] |
C. sapindi | KUMCC 21-0564 T | OP059009 | OP059058 | OP058967 | OP135943 | This study |
C. sapindi | KUMCC 21-0594 | OP059010 | OP059059 | OP058968 | OP135944 | This study |
Cylindroaseptospora leucaenae | MFLUCC 17-2424 T | NR_163333 | NG_066310 | MK347856 | MK360047 | [33] |
C. siamensis | MFLUCC 17-2527 T | MK347760 | MK347976 | MK347866 | MK360048 | [33] |
Deniquelata barringtoniae | MFLUCC 11-0422 T | NR_111779 | NG_042696 | JX254656 | NA | [68] |
D. vittalii | NFCCI4249 T | MF406218 | MF182395 | MF622059 | MF182398 | [69] |
Dictyoarthrinium hydei | SQUCC 13296 T | MW077145 | NA | MW077161 | MW075771 | [26] |
D. musae | MFLUCC 20-0105 T | MT482323 | MT482320 | MT482326 | MT495602 | [52] |
D. musae | MFLUCC 20-0106 T | MT482324 | MT482321 | MT482327 | MT495603 | [52] |
D. sacchari | MFLUCC 20-0107 | MT482325 | MT482322 | MT482328 | NA | [52] |
D. sacchari | CBS 529.73 | NA | MH872479 | NA | NA | [70] |
D. thailandicum | KUMCC 21-0664 T | OP059007 | OP059056 | OP058965 | NA | This study |
D. thailandicum | KUMCC 21-0665 | OP059008 | OP059057 | OP058966 | OP135942 | This study |
Didymocrea sadasivanii | CBS 438.65 T | MH858658 | DQ384103 | NA | NA | [70] |
Didymosphaeria rubi-ulmifolii | MFLUCC 14-0023 T | NA | KJ436586 | NG_063557 | NA | [40] |
D. rubi-ulmifolii | MFLUCC 14-0024 | NA | KJ436585 | KJ436587 | NA | [40] |
Kalmusia italica | MFLUCC 14-0560 T | KP325440 | KP325441 | KP325442 | NA | [71] |
K. variispora | CBS 121517 T | MH863113 | MH874668 | NA | NA | [28] |
K. ebuli | CBS 123120 T | KF796674 | JN644073 | JN851818 | NA | [72] |
Kalmusibambusa triseptata | MFLUCC 13-0232 T | KY682697 | KY682695 | KY682696 | NA | [41] |
Karstenula lancangensis | KUMCC 21-0670 T | OP059011 | OP059060 | OP058969 | NA | This study |
K. lancangensis | KUMCC 21-0677 | OP059012 | OP059061 | OP058970 | NA | This study |
K. rhodostoma | CBS 690.94 | NA | GU301821 | GU296154 | GU349067 | [73] |
K. rhodostoma | CBS 691.94 | LC014559 | AB807531 | AB797241 | AB808506 | [73] |
Laburnicola hawksworthii | MFLUCC 13-0602 T | KU743194 | KU743195 | KU743196 | NA | [42] |
L. muriformis | MFLUCC 14-0921 T | KU743200 | KU743201 | KU743202 | NA | [42] |
Letendraea cordylinicola | MFLUCC 11-0150 | KM213996 | KM213999 | KM214002 | NA | [40] |
L. cordylinicola | MFLUCC 11-0148 T | NR_154118 | NG_059530 | KM214001 | NA | [40] |
Montagnula aloes | CPC 19671 T | JX069863 | JX069847 | NA | NA | [74] |
M. aloes | CBS 132531 T | NR_111757 | NG_042676 | NA | NA | [74] |
M. appendiculata | CBS 109027 T | DQ435529 | AY772016 | NA | NA | [75] |
M. bellevaliae | MFLUCC 14-0924 T | KT443906 | KT443902 | KT443904 | NA | [76] |
M. camporesii | MFLUCC 16-1369 T | MN401746 | NG_070946 | NG_068418 | MN397908 | [77] |
M. chiangraiensis | MFLUCC 17-1420 T | NR_168864 | NG_068707 | NG_070155 | NA | [39] |
M. chromolaenae | MFLUCC 17-1435 T | NR_168865 | NG_068708 | NG_070156 | NA | [39] |
M. chromolaenicola | MFLUCC 17-1469 T | NR_168866 | NG_070948 | NG_070157 | MT235773 | [39] |
M. cirsii | MFLUCC 13-0680 | KX274242 | KX274249 | KX274255 | KX284707 | [78] |
M. cylindrospora | UTHSC: DI16-208 T | LT796834 | LN907351 | NA | LT797074 | [74] |
M. donacina | HFG07004 | MF967419 | MF183940 | NA | NA | [79] |
M. donacina | HVVV01 | KJ628375 | KJ628377 | KJ628376 | NA | [80] |
M. donacina | KUMCC 21-0653 | OP059003 | OP059052 | OP058961 | OP135938 | This study |
M. donacina | KUMCC 21-0579 | OP059005 | OP059054 | OP058963 | OP135940 | This study |
M. donacina | KUMCC 21-0631 | OP059004 | OP059053 | OP058962 | OP135939 | This study |
M. graminicola | MFLUCC 13-0352 T | KM658314 | KM658315 | KM658316 | NA | [81] |
M. jonesii | MFLUCC 16-1448 T | KY313619 | KY273276 | KY313618 | KY313620 | [49] |
M. krabiensis | MFLUCC 16-0250 T | NR168179 | NG068826 | NG068385 | MH412776 | [82] |
M. puerensis | KUMCC 20-0225 T | MW567739 | MW575866 | MW575864 | MW575859 | [83] |
M. puerensis | KUMCC 20-0331 | MW567740 | MW575867 | MW575865 | MW575860 | [83] |
M. saikhuensis | MFLUCC 16-0315 T | KU743209 | KU743210 | KU743211 | NA | [42] |
M. scabiosae | MFLUCC 14-0954 T | KT443907 | KT443903 | KT443905 | NA | [76] |
M. thailandica | MFLUCC 17-1508 T | MT214352 | NG070949 | NG070158 | MT235774 | [39] |
Neokalmusia brevispora | KT 1466 T | LC014573 | AB524600 | AB524459 | AB539112 | [73] |
N. scabrispora | KT 1023 | LC014575 | AB524593 | AB524452 | AB539106 | [73] |
Neptunomyces aureus | CMG12 T | MK912121 | NA | NA | MK948000 | [84] |
N. aureus | CMG13 | MK912122 | NA | NA | MK948001 | [84] |
Paraconiothyrium cyclothyrioides | CBS 972.95 T | JX496119 | JX496232 | AY642524 | NA | [28] |
P. cyclothyrioides | CBS 432.75 | MH860933 | MH872689 | NA | NA | [28] |
P. estuarinum | CBS 109850 | MH862842 | MH874432 | NA | NA | [28] |
Paracamarosporium fagi | CPC 24890 | KR611886 | KR611904 | NA | NA | [35] |
P. fagi | CPC 24892 T | KR611887 | KR611905 | NA | NA | [35] |
Paramassariosphaeria anthostomoides | CBS 615.86 | MH862005 | GU205223 | GU205246 | NA | [28] |
P. anthostomoides | MFLU 16-0172 T | KU743206 | KU743207 | KU743208 | NA | [42] |
Paraphaeosphaeria rosae | MFLUCC 17-2547 | MG828935 | MG829044 | MG829150 | MG829222 | [85] |
P. rosae | MFLUCC 17-2549 T | MG828937 | MG829046 | MG829152 | MG829223 | [85] |
P. rosicola | MFLUCC 15-0042 T | NR_157528 | MG829047 | MG829153 | NA | [85] |
Phaeodothis winteri | CBS 182.58 | NA | GU301857 | GU296183 | NA | [86] |
Pseudocamarosporium propinquum | MFLUCC 13-0544 | KJ747049 | KJ813280 | KJ819949 | NA | [36] |
P. pteleae | MFLUCC 17-0724 T | NR_157536 | MG829061 | MG829166 | MG829233 | [85] |
Pseudopithomyces entadae | MFLUCC 17-0917 T | NA | NG_066305 | MK347835 | MK360083 | [33] |
P. rosae | MFLUCC 15-0035 T | MG828953 | MG829064 | MG829168 | NA | [85] |
Septofusispora thailandica | KUMCC 21-0647 T | OP059013 | OP059062 | OP058971 | OP135945 | This study |
S. thailandica | KUMCC 21-0652 | OP059014 | OP059063 | OP058972 | NA | This study |
Spegazzinia bromeliacearum | URM 8084 T | MK804501 | MK809513 | NA | NA | [87] |
S. deightonii | MFLUCC 20-0002 T | MN956768 | MN956772 | MN956770 | MN927133 | [73] |
S. intermedia | CBS 249.89 T | MH862171 | MH873861 | NA | NA | [70] |
S. jinghaensis | KUMCC 21-0495 T | OP059015 | OP059064 | OP058973 | OP135946 | This study |
S. jinghaensis | KUMCC 21-0496 | OP059016 | OP059065 | OP058974 | OP135947 | This study |
S. lobulata | CBS 361.58 T | MH857812 | MH869344 | NA | NA | [70] |
S. musae | MFLUCC 20-0001 T | MN930512 | MN930514 | MN930513 | MN927132 | [52] |
S. neosundara | MFLUCC 15-0456 T | KX965728 | KX954397 | KX986341 | NA | [41] |
S. radermacherae | MFLUCC 17-2285 T | MK347740 | MK347957 | MK347848 | MK360088 | [33] |
S. tessarthra | SH 287 | JQ673429 | AB807584 | AB797294 | AB808560 | [73] |
Tremateia arundicola | MFLU 16-1275 T | KX274241 | KX274248 | KX274254 | KX284706 | [49] |
T. guiyangensis | GZAAS01 T | KX274240 | KX274247 | KX274253 | KX284705 | [49] |
T. murispora | GZCC 18-2787 T | NR_165916 | MK972751 | MK972750 | MK986482 | [88] |
Verrucoconiothyrium nitidae | CBS: 119209 | EU552112 | EU552112 | NA | NA | [89] |
Xenocamarosporium acaciae | CBS: 139895 T | NR_137982 | NG_058163 | NA | NA | [35] |
X. acaciae | MFLUCC 17-2432 | MK347766 | MK347983 | MK347873 | MK360093 | [33] |
3. Results
3.1. Phylogeny
3.2. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species Name | Ascomata | Asci | Ascospores | Reference | |||||
---|---|---|---|---|---|---|---|---|---|
Color | Shape | Size | Rows of Ascospores in Asci | Septation | Surface | ||||
M. chromolaenicola | Uni-loculate, 310 × 275 μm diam. | 90 × 12 μm, bitunicate, elongate-clavate, 8-spored, long pedicellate | Brown to dark brown | Broadly fusiform to ellipsoid | 15.5 × 6 μm | Overlapping 1–2-seriate | 1 | Guttulate | [39] |
M. donacina | Multi-loculate, 500 μm diam. | 90–100 × 12–13 μm, bitunicate, clavate, 8-spored, long pedicellate | Brown | Ellipsoid | 14.8–15.2 × 7.5–7.7 μm | Irregularly biseriate | 1 | Guttulate | [80,100] |
M. donacina (HKAS 122778) | Uni-loculate, 490 × 410 µm diam. | 110 × 13 µm, bitunicate, elongate-clavate, slightly curved, 8-spored, long pedicellate | Pale brown to brown | Broadly fusiform | 15 × 5 µm | Overlapping 1–2-seriate | 1 | Guttulate | This study |
M. donacina graminicola | Uni-loculate, 37–117.22 μm diam. | 81.3 × 10.1 μm, bitunicate, cylindrical to clavate, 8-spored, long pedicellate | Brown | Ellipsoid | 11.3 × 4.9 μm | Biseriate | 1 | Verruculose, mucilaginous sheath | [81] |
M. puerensis | Uni-loculate, 300–600 × 230–380 μm diam. | 92 × 11 μm, bitunicate, elongate-clavate, 8-spored, long, furcate pedicellate | Brown to dark brown | Ellipsoid | 14 × 6 μm | Biseriate | 1 | Guttulate | [83] |
M. saikhuensis | Uni-loculate, 411.7 × 460.5 μm diam. | 84.2 × 11.2 μm, bitunicate, elongate-clavate to short cylindrical, 8-spored, long pedicellate | Brown to blackish | Ellipsoid | 14.6 × 5.1 μm | Overlapping 1–2-seriate | 1 | Guttulate | [42] |
M. thailandica | Uni-loculate, 380 × 340 μm diam. | 90 × 11 μm, bitunicate, elongate-clavate, slightly curved, 8-spored, long pedicellate | Brown to reddish-brown | Broadly fusiform to ellipsoid | 15 × 5.5 μm | Overlapping 1–2-seriate | 1 | Guttulate | [39] |
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Ren, G.; Wanasinghe, D.N.; de Farias, A.R.G.; Hyde, K.D.; Yasanthika, E.; Xu, J.; Balasuriya, A.; Chethana, K.W.T.; Gui, H. Taxonomic Novelties of Woody Litter Fungi (Didymosphaeriaceae, Pleosporales) from the Greater Mekong Subregion. Biology 2022, 11, 1660. https://doi.org/10.3390/biology11111660
Ren G, Wanasinghe DN, de Farias ARG, Hyde KD, Yasanthika E, Xu J, Balasuriya A, Chethana KWT, Gui H. Taxonomic Novelties of Woody Litter Fungi (Didymosphaeriaceae, Pleosporales) from the Greater Mekong Subregion. Biology. 2022; 11(11):1660. https://doi.org/10.3390/biology11111660
Chicago/Turabian StyleRen, Guangcong, Dhanushka N. Wanasinghe, Antonio Roberto Gomes de Farias, Kevin D. Hyde, Erandi Yasanthika, Jianchu Xu, Abhaya Balasuriya, Kandawatte Wedaralalage Thilini Chethana, and Heng Gui. 2022. "Taxonomic Novelties of Woody Litter Fungi (Didymosphaeriaceae, Pleosporales) from the Greater Mekong Subregion" Biology 11, no. 11: 1660. https://doi.org/10.3390/biology11111660
APA StyleRen, G., Wanasinghe, D. N., de Farias, A. R. G., Hyde, K. D., Yasanthika, E., Xu, J., Balasuriya, A., Chethana, K. W. T., & Gui, H. (2022). Taxonomic Novelties of Woody Litter Fungi (Didymosphaeriaceae, Pleosporales) from the Greater Mekong Subregion. Biology, 11(11), 1660. https://doi.org/10.3390/biology11111660