Single-Molecule Detection Technologies: Advances in Devices, Transduction Mechanisms, and Functional Materials for Real-World Biomedical and Environmental Applications

Single-molecule detection (SMD) has reformed analytical science by enabling the direct observation of individual molecular events, thus overcoming the limitations of ensemble-averaged measurements. This review presents a comprehensive analysis of the principles, devices, and emerging materials that have shaped the current landscape of SMD. We explore a wide range of sensing mechanisms, including surface plasmon resonance, mechanochemical transduction, transistor-based sensing, optical microfiber platforms, fluorescence-based techniques, Raman scattering, and recognition tunneling, which offer distinct advantages in terms of label-free operation, ultrasensitivity, and real-time responsiveness. Each technique is critically examined through representative case studies, revealing how innovations in device architecture and signal amplification strategies have collectively pushed the detection limits into the femtomolar to attomolar range. Beyond the sensing principles, this review highlights the transformative role of advanced nanomaterials such as graphene, carbon nanotubes, quantum dots, MnO₂ nanosheets, upconversion nanocrystals, and magnetic nanoparticles. These materials enable new transduction pathways and augment the signal strength, specificity, and integration into compact and wearable biosensing platforms. We also detail the multifaceted applications of SMD across biomedical diagnostics, environmental monitoring, food safety, neuroscience, materials science, and quantum technologies, underscoring its relevance to global health, safety, and sustainability. Despite significant progress, the field faces several critical challenges, including signal reproducibility, biocompatibility, fabrication scalability, and data interpretation complexity. To address these barriers, we propose future research directions involving multimodal transduction, AI-assisted signal analytics, surface passivation techniques, and modular system design for field-deployable diagnostics. By providing a cross-disciplinary synthesis of device physics, materials science, and real-world applications, this review offers a comprehensive roadmap for the next generation of SMD technologies, poised to impact both fundamental research and translational healthcare.