Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease
Abstract
:1. Introduction
2. Materials and Methods
2.1. Patient Selection
2.2. Sample Size Determination
2.3. Periodontal Examination
2.4. Sample Collection and DNA Extraction
2.5. Multiplex Quantitative RT-PCR (qPCR)
2.6. Bacterial Quantification
2.7. Statistical Analysis
3. Results
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Bacteria | Target Gene | Primer/ Probe | Sequence (5′-3′) | Ref. | Bacteria | Target Gene | Primer/ Probe | Sequence (5′-3′) | Ref. |
---|---|---|---|---|---|---|---|---|---|
Aggregatibacter actinomycetemcomitans | leukotoxin | Forward | CG**********GA | [15] | Eubacterium nodatum | hypothetical protein | Forward | TG**********GA | [16] |
Reverse | AT**********CA | Reverse | AA**********AT | ||||||
Probe | [FAM]GG**********CC[BHQ1] | Probe | [TR]TT**********GG[BHQ2] | ||||||
Porphyromonas gingivalis | hemagglutinin | Forward | AC**********GC | [17] | Eikenella corrodens | prolineiminopeptidase | Forward | GC**********TG | [16] |
Reverse | GC**********CT | Reverse | GC**********TT | ||||||
Probe | [HEX]CG**********GA[BHQ1] | Probe | [Cy5]AC**********AT[BHQ2] | ||||||
Tannerella forsythia | karilysin protease | Forward | TG**********CC | [18] | Streptococcus mitis | 16S ribosomal RNA | Forward | GT**********CG | [19] |
Reverse | TT**********CA | Reverse | TA**********AT | ||||||
Probe | [TR]CC**********GG[BHQ2] | Probe | [FAM]TA**********CC[BHQ1] | ||||||
Treponema denticola | OpdB | Forward | AG**********AG | [20] | Streptococcus mutans | PTS EII | Forward | CA**********CA | [21] |
Reverse | GC**********AT | Reverse | TG**********CC | ||||||
Probe | [Cy5]CG**********TC[BHQ2] | Probe | [HEX]TG**********GG[BHQ1] | ||||||
Fusobacterium nucleatum | 16S ribosomal RNA | Forward | GG**********TC | [22] | Streptococcus sobrinus | Ftsk | Forward | GG**********CC | [23] |
Reverse | CT**********GC | Reverse | AC**********GG | ||||||
Probe | [FAM]AA**********CG[BHQ1] | Probe | [TR]AG**********GC[BHQ2] | ||||||
Prevotella intermedia | hemagglutinin | Forward | CA**********AC | [15] | Lactobacillus casei | att | Forward | CA**********GT | [24] |
Reverse | CA**********TC | Reverse | AC**********CC | ||||||
Probe | [HEX]CC**********AC[BHQ1] | Probe | [Cy5]TG**********GT[BHQ2] | ||||||
Prevotella nigrescens | gyrase subunit B | Forward | AG**********CT | [16] | Staphylococcus aureus | clumping factor A | Forward | GC**********AA | [25] |
Reverse | GC**********CT | Reverse | GA**********TT | ||||||
Probe | [TR]GC**********AA[BHQ2] | Probe | [FAM]TG**********CA[BHQ1] | ||||||
Parvimonas micra | 16S ribosomal RNA | Forward | GA**********AG | [15] | Enterococcus faecalis | gelE-sprE operon | Forward | GA**********TT | [26] |
Reverse | GG**********CC | Reverse | CG**********AC | ||||||
Probe | [FAM]GG**********CA[BHQ1] | Probe | [HEX]GC**********GA[BHQ1] | ||||||
Campylobacter rectus | GroEL | Forward | AA**********GG | [16] | Actinomyces viscosus | nanH | Forward | GC**********CG | [21] |
Reverse | TC**********GA | Reverse | GA**********CA | ||||||
Probe | [HEX]GG**********GT[BHQ1] | Probe | [TR]GA**********AA[BHQ2] |
Characteristic | Healthy Group (n = 35) | Severe Periodontitis Group (n = 52) | |
---|---|---|---|
Age (Years, mean ± SD) | 39.0 ± 17.9 | 56.2 ± 15.2 | |
Sex | Male | 29 (83%) | 44 (85%) |
Female | 6 (17%) | 8 (15%) | |
Smoking | Non-smokers | 31 (89%) | 46 (88%) |
Current smokers | 4 (11%) | 6 (12%) |
Bacteria | Healthy Group (n = 35) | Severe Periodontitis Group (n = 52) |
---|---|---|
Aggregatibacter actinomycetemcomitans | ||
Prevalence, n (%) a | 1 (2.9) | 7 (13.5) |
Median bacterial cells proportion (%) (IQR) | 0.46 (0.46–0.46) | 0.75 (0.46–1.07) |
Porphyromonas gingivalis | ||
Prevalence, n (%) | 16 (45.7) | 47 (90.4) |
Median bacterial cells proportion (%) (IQR) | 3.43 (1.74–5.86) | 3.83 (2.27–8.28) |
Tannerella forsythia | ||
Prevalence, n (%) | 26 (74.3) | 38 (73.1) |
Median bacterial cells proportion (%) (IQR) | 3.07 (0.65–7.74) | 26.07 (4.49–50.82) |
Treponema denticola | ||
Prevalence, n (%) a | 15 (42.9) | 36 (69.2) |
Median bacterial cells proportion (%) (IQR) | 0.59 (0.18–2.34) | 2.91 (1.36–5.39) |
Fusobacterium nucleatum | ||
Prevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells proportion (%) (IQR) | 18.73 (13.31–23.15) | 12.89 (7.23–20.02) |
Prevotella intermedia | ||
Prevalence, n (%) | 8 (22.9) | 15 (28.8) |
Median bacterial cells proportion (%) (IQR) | 0.22 (0.05–0.46) | 0.11 (0.05–0.19) |
Prevotella nigrescens | ||
Prevalence, n (%) a | 28 (80.0) | 43 (82.7) |
Median bacterial cells proportion (%) (IQR) | 0.73 (0.4–1.94) | 0.47 (0.14–1.23) |
Parvimonas micra | ||
Prevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells proportion (%) (IQR) | 0.5 (0.29–0.82) | 0.99 (0.45–1.81) |
Campylobacter rectus | ||
Prevalence, n (%) | 28 (80.0) | 45 (86.5) |
Median bacterial cells proportion (%) (IQR) | 0.11 (0.06–0.18) | 0.08 (0.04–0.13) |
Eubacterium nodatum | ||
Prevalence, n (%) | 3 (8.6) | 14 (26.9) |
Median bacterial cells proportion (%) (IQR) | 0.21 (0.12–0.27) | 0.71 (0.3–1.34) |
Eikenella corrodens | ||
Prevalence, n (%) | 4 (11.4) | 15 (28.8) |
Median bacterial cells proportion (%) (IQR) | 0.07 (0.04–0.45) | 0.28 (0.15–0.71) |
Streptococcus mitis | ||
Prevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells proportion (%) (IQR) | 73.72 (63.61–79.49) | 59.13 (37.87–70.34) |
Streptococcus mutans | ||
Prevalence, n (%) | 23 (65.7) | 35 (67.3) |
Median bacterial cells proportion (%) (IQR) | 0.03 (0.02–0.1) | 0.03 (0.01–0.15) |
Streptococcus sobrinus | ||
Prevalence, n (%) | 1 (2.9) | 5 (9.6) |
Median bacterial cells proportion (%) (IQR) | 0.06 (0.06–0.06) | 0 (0–0.01) |
Lactobacillus casei | ||
Prevalence, n (%) | 6 (17.1) | 18 (34.6) |
Median bacterial cells proportion (%) (IQR) | 0.01 (0–0.04) | 0 (0–0.01) |
Staphylococcus aureus | ||
Prevalence, n (%) | 15 (42.9) | 4 (7.7) |
Median bacterial cells proportion (%) (IQR) | 0.02 (0.01–0.14) | 0.03 (0–0.07) |
Enterococcus faecalis | ||
Prevalence, n (%) | 0 (0.0) | 0 (0.0) |
Median bacterial cells proportion (%) (IQR) | NA (NA–NA) | NA (NA–NA) |
Actinomyces viscosus | ||
Prevalence, n (%) | 0 (0.0) | 0 (0.0) |
Median bacterial cells proportion (%) (IQR) | NA (NA–NA) | NA (NA–NA) |
Total number of cellsPrevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells (IQR) | 36,126,518 (16,199,034–92,716,204) | 108524910 (69,243,624.5–177,393,988.25) |
Aa | Pg | Tf | Td | Fn | Pi | Pn | Pm | Cr | En | Ec | Sm | Smu | Ss | Lc | Sa | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aa | 0.96 * | −0.49 | 0.3 | 0.38 | 0.98 * | 0.91 * | 0.57 | 0.07 | −0.26 | ||||||||
Pg | −0.04 | 0.25 | −0.01 | −0.06 | 0.16 | 0.23 | −0.02 | 0.57 * | −0.3 | −0.34 * | 0.16 | 0.5 | −0.05 | −0.27 | −0.06 | ||
Tf | 0.19 | −0.56 * | −0.21 | −0.28 * | 0.03 | −0.02 | 0.1 | −0.37 | −0.87 * | −0.22 | −0.54 | −0.2 | −0.21 | 0.14 | |||
Td | −0.17 | 0.53 * | 0.05 | 0.61 * | −0.08 | 0.8 * | −0.24 | −0.42 * | −0.02 | −0.17 | 0.34 | −0.4 | −0.07 | ||||
Fn | 0.21 | 0.25 * | −0.15 | 0.18 | −0.17 | 0.07 | 0.25 * | 0.02 | 0.9 * | 0.52 * | 0.02 | −0.13 | |||||
Pi | 0.53 * | 0.14 | 0.51 * | 0.51 | 0.09 | −0.09 | 0.43 | 0.32 | |||||||||
Pn | 0.15 | 0.23 | −0.16 | −0.13 | 0.07 | −0.18 | 0.75 | −0.03 | −0.32 | −0.21 | |||||||
Pm | 0.18 | 0.13 | −0.27 | −0.23 * | 0 | 0.17 | −0.02 | −0.23 | −0.02 | ||||||||
Cr | −0.31 | −0.24 | 0.03 | −0.15 | 0.88 * | 0.06 | −0.24 | −0.16 | |||||||||
En | −0.13 | 0.35 | 0.3 | 0.42 | |||||||||||||
Ec | 0.24 | 0.19 | −0.17 | −0.16 | |||||||||||||
Sm | 0.12 | 0.33 | 0.04 | 0.23 | −0.03 | ||||||||||||
Smu | −0.12 | −0.13 | −0.15 | −0.09 | |||||||||||||
Ss | −0.62 | ||||||||||||||||
Lc | −0.16 | ||||||||||||||||
Sa | −0.21 | ||||||||||||||||
Total |
Aa | Pg | Tf | Td | Fn | Pi | Pn | Pm | Cr | En | Ec | Sm | Smu | Ss | Lc | Sa | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aa | 0.96 * | −0.81 | 0.24 | 0.55 | 0.98 * | 0.92 * | 0.56 | 0.18 | −0.34 | ||||||||
Pg | −0.03 | 0.22 | 0.02 | −0.04 | 0.12 | 0.22 | 0 | 0.57 * | −0.32 | −0.3 * | 0.14 | 0.71 | −0.05 | −0.07 | |||
Tf | 0.11 | −0.67 * | −0.13 | −0.34 | −0.12 | −0.13 | 0.05 | −0.49 | −0.88 * | −0.29 | 0.11 | −0.31 | 0.05 | ||||
Td | −0.12 | 0.55 | 0.07 | 0.62 * | −0.09 | 0.78 * | −0.34 | −0.33 * | −0.08 | −0.17 | 0.4 | −0.16 | |||||
Fn | 0.26 | 0.33 * | −0.1 | 0.24 | −0.12 | 0.28 | 0.43 * | 0.38 * | 0.33 | 0.19 | 0.01 | ||||||
Pi | 0.75 * | 0.21 | 0.56 * | 0.58 | 0.15 | −0.16 | 0.36 | ||||||||||
Pn | 0.23 | 0.4 * | −0.22 | −0.14 | 0.15 | −0.15 | −0.26 | −0.17 | −0.23 | ||||||||
Pm | 0.22 | −0.09 | −0.32 | −0.11 | −0.08 | −0.37 | 0.11 | −0.12 | |||||||||
Cr | −0.32 | −0.22 | 0.12 | −0.18 | 0.95 * | 0.22 | −0.14 | ||||||||||
En | −0.13 | 0.31 | 0.3 | 0.45 | |||||||||||||
Ec | 0.2 | 0.18 | −0.23 | −0.24 | |||||||||||||
Sm | 0.12 | −0.2 | 0.24 | 0.04 | |||||||||||||
Smu | 0.01 | −0.23 | |||||||||||||||
Ss | −0.49 | ||||||||||||||||
Lc | −0.12 | ||||||||||||||||
Sa | |||||||||||||||||
Total |
Aa | Pg | Tf | Td | Fn | Pi | Pn | Pm | Cr | En | Ec | Sm | Smu | Ss | Lc | Sa | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aa | 0.96 * | −0.81 | 0.24 | 0.55 | 0.98 * | 0.92 * | 0.56 | 0.18 | −0.34 | ||||||||
Pg | −0.03 | 0.22 | 0.02 | −0.04 | 0.12 | 0.22 | 0 | 0.57 * | −0.32 | −0.3 * | 0.14 | 0.71 | −0.05 | −0.07 | |||
Tf | 0.11 | −0.67 * | −0.13 | −0.34 | −0.12 | −0.13 | 0.05 | −0.49 | −0.88 * | −0.29 | 0.11 | −0.31 | 0.05 | ||||
Td | −0.12 | 0.55 | 0.07 | 0.62 * | −0.09 | 0.78 * | −0.34 | −0.33 * | −0.08 | −0.17 | 0.4 | −0.16 | |||||
Fn | 0.26 | 0.33 * | −0.1 | 0.24 | −0.12 | 0.28 | 0.43 * | 0.38 * | 0.33 | 0.19 | 0.01 | ||||||
Pi | 0.75 * | 0.21 | 0.56 * | 0.58 | 0.15 | −0.16 | 0.36 | ||||||||||
Pn | 0.23 | 0.4 * | −0.22 | −0.14 | 0.15 | −0.15 | −0.26 | −0.17 | −0.23 | ||||||||
Pm | 0.22 | −0.09 | −0.32 | −0.11 | −0.08 | −0.37 | 0.11 | −0.12 | |||||||||
Cr | −0.32 | −0.22 | 0.12 | −0.18 | 0.95 * | 0.22 | −0.14 | ||||||||||
En | −0.13 | 0.31 | 0.3 | 0.45 | |||||||||||||
Ec | 0.2 | 0.18 | −0.23 | −0.24 | |||||||||||||
Sm | 0.12 | −0.2 | 0.24 | 0.04 | |||||||||||||
Smu | 0.01 | −0.23 | |||||||||||||||
Ss | −0.49 | ||||||||||||||||
Lc | −0.12 | ||||||||||||||||
Sa | |||||||||||||||||
Total |
Levels | No. of Subjects | No. (%) with Severe Periodontitis | Crude OR (95% CI) | p Value | Adjusted OR (95% CI) | p Value | |
---|---|---|---|---|---|---|---|
Aa | |||||||
0 | 79 | 45 (57.0) | 1 | 1 | |||
1 | 4 | 3 (75.0) | 1.8 (0.3–18.9) | 0.557 | 13.7 (0.9–389.2) | 0.059 | |
2 | 4 | 4 (100.0) | 6.8 (0.7–915.8) | 0.111 | 1.6 (0.1–232.1) | 0.750 | |
Pg | |||||||
0 | 24 | 5 (20.8) | 1 | - | 1 | - | |
1 | 31 | 23 (74.2) | 10.9 (3.1–39.0) | <0.001 | 3.3 (0.4–26.6) | 0.271 | |
2 | 32 | 24 (75.0) | 11.4 (3.2–40.6) | <0.001 | 1.1 (0.1–8.7) | 0.942 | |
Tf | |||||||
0 | 23 | 14 (60.9) | 1 | - | 1 | - | |
1 | 32 | 13 (40.6) | 0.4 (0.1–1.3) | 0.141 | 0.1 (0.0–1.1) | 0.059 | |
2 | 32 | 25 (78.1) | 2.3 (0.7–7.5) | 0.169 | 3.7 (0.3–48.1) | 0.319 | |
Td | |||||||
0 | 36 | 16 (44.4) | 1 | - | 1 | - | |
1 | 25 | 14 (56.0) | 1.6 (0.6–4.4) | 0.375 | 5.3 (0.6–44.8) | 0.129 | |
2 | 26 | 22 (84.6) | 6.9 (2.0–24.0) | 0.002 | 7.3 (1.1–47.4) | 0.035 | |
Fn | |||||||
1 | 43 | 30 (69.8) | 1 | - | 1 | - | |
2 | 44 | 22 (50.0) | 0.4 (0.2–1.0) | 0.062 | 1.0 (0.2–4.3) | 0.969 | |
Pi | |||||||
0 | 64 | 37 (57.8) | 1 | - | 1 | - | |
1 | 11 | 7 (63.6) | 1.3 (0.3–4.8) | 0.717 | 0.7 (0.1–7.6) | 0.762 | |
2 | 12 | 8 (66.7) | 1.5 (0.4–5.3) | 0.568 | 0.5 (0.1–3.4) | 0.504 | |
Pn | |||||||
0 | 16 | 9 (56.2) | 1 | - | 1 | - | |
1 | 35 | 25 (71.4) | 1.9 (0.6–6.7) | 0.289 | 120.4 (5.3–2725.4) | 0.002 | |
2 | 36 | 18 (50.0) | 0.8 (0.2–2.5) | 0.677 | 22.5 (2.0–260.6) | 0.012 | |
Pm | |||||||
1 | 43 | 19 (44.2) | 1 | - | 1 | - | |
2 | 44 | 33 (75.0) | 3.8 (1.5–9.4) | 0.004 | 4.4 (1.0–20.1) | 0.057 | |
Cr | |||||||
0 | 14 | 7 (50.0) | 1 | - | 1 | - | |
1 | 36 | 25 (69.4) | 2.3 (0.6–8.1) | 0.203 | 3.5 (0.5–27.3) | 0.226 | |
2 | 37 | 20 (54.1) | 1.2 (0.3–4.0) | 0.795 | 1.6 (0.2–11.0) | 0.628 | |
En | |||||||
0 | 70 | 38 (54.3) | 1 | - | 1 | - | |
1 | 8 | 5 (62.5) | 1.3 (0.3–6.1) | 0.694 | 0.3 (0.1–2.0) | 0.227 | |
2 | 9 | 9 (100.0) | 16.0 (1.9–2097.0) | 0.006 | 4.3 (0.4–609.5) | 0.280 | |
Ec | |||||||
0 | 68 | 37 (54.4) | 1 | - | 1 | - | |
1 | 9 | 6 (66.7) | 1.7 (0.4–7.3) | 0.490 | 2.6 (0.2–30.9) | 0.441 | |
2 | 10 | 9 (90.0) | 7.5 (0.9–62.8) | 0.061 | 13.6 (0.5–380.9) | 0.124 | |
Sm | |||||||
1 | 43 | 33 (76.7) | 1 | - | 1 | - | |
2 | 44 | 19 (43.2) | 0.2 (0.1–0.6) | 0.001 | 0.1 (0.0–0.8) | 0.024 | |
Smu | |||||||
0 | 29 | 17 (58.6) | 1 | - | 1 | - | |
1 | 29 | 18 (62.1) | 1.2 (0.4–3.3) | 0.788 | 2.5 (0.4–18.3) | 0.354 | |
2 | 29 | 17 (58.6) | 1.0 (0.4–2.8) | 1 | 0.4 (0.1–2.5) | 0.316 | |
Ss | |||||||
0 | 81 | 47 (58.0) | 1 | 1 | |||
1 | 3 | 3 (100.0) | 5.1 (0.5–692.1) | 0.205 | 1.6 (0.1–244.0) | 0.755 | |
2 | 3 | 2 (66.7) | 1.2 (0.2–13.7) | 0.856 | 1.4 (0.1–193.5) | 0.873 | |
Lc | |||||||
0 | 63 | 34 (54.0) | 1 | - | 1 | - | |
1 | 12 | 11 (91.7) | 9.4 (1.1–77.0) | 0.037 | 1.4 (0.1–14.1) | 0.795 | |
2 | 12 | 7 (58.3) | 1.2 (0.3– 4.2) | 0.780 | 0.3 (0.0–1.9) | 0.192 | |
Sa | |||||||
0 | 68 | 48 (70.6) | 1 | - | 1 | - | |
1 | 9 | 2 (22.2) | 0.1 (0.0–0.6) | 0.011 | 0.2 (0.0–2.0) | 0.162 | |
2 | 10 | 2 (20.0) | 0.1 (0.0–0.5) | 0.006 | 0.4 (0.0–7.4) | 0.525 | |
Total | |||||||
1 | 43 | 18 (41.9) | 1 | - | 1 | - | |
2 | 44 | 34 (77.3) | 4.7 (1.9–12.0) | 0.001 | 1.4 (0.3–5.8) | 0.673 |
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Kim, J.-H.; Oh, J.-W.; Lee, Y.; Yun, J.-H.; Choi, S.-H.; Lee, D.-W. Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease. J. Clin. Med. 2021, 10, 891. https://doi.org/10.3390/jcm10040891
Kim J-H, Oh J-W, Lee Y, Yun J-H, Choi S-H, Lee D-W. Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease. Journal of Clinical Medicine. 2021; 10(4):891. https://doi.org/10.3390/jcm10040891
Chicago/Turabian StyleKim, Jeong-Hwa, Jae-Woon Oh, Young Lee, Jeong-Ho Yun, Seong-Ho Choi, and Dong-Woon Lee. 2021. "Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease" Journal of Clinical Medicine 10, no. 4: 891. https://doi.org/10.3390/jcm10040891