Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae)
Abstract
1. Introduction
2. Materials and Methods
2.1. Phylogenetic Analysis
2.2. Plastome Comparison Analyses
2.3. Simple Sequence Repeats and Codon Bias Analyses
2.4. Identification of Divergence Hotspots
3. Results
3.1. Phylogenetic Analyses
3.2. Characteristics of Plastome
3.3. Simple Sequence Repeats and Codon Bias
3.4. Plastome Comparison
3.5. Nucleotide Diversity (Pi) Analysis
4. Discussion
4.1. Plastome Comparative Analyses
4.2. Phylogenetic Inference and Taxonomic Implication of Ligusticum Multivittatum
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Taxon | Length (bp) | Number of Genes (Unique) | |||||||
---|---|---|---|---|---|---|---|---|---|
Genome | LSC | SSC | IR | Total | CDS | rRNA | tRNA | GC (%) | |
Ligusticopsis brachyloba | 148,633 | 92,265 | 17,588 | 19,390 | 113 | 79 | 4 | 30 | 37.40% |
Ligusticopsis capillacea | 147,808 | 91,907 | 17,503 | 19,199 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis daucoides | 148,078 | 91,666 | 17,582 | 19,415 | 113 | 79 | 4 | 30 | 37.40% |
Ligusticopsis franchetii | 148,281 | 92,298 | 17,691 | 19,146 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis hispida | 147,797 | 91,846 | 17,627 | 19,162 | 113 | 79 | 4 | 30 | 37.40% |
Ligusticopsis involucrata | 147,752 | 91,782 | 17,560 | 19,205 | 113 | 79 | 4 | 30 | 37.40% |
Ligusticopsis intergrifolia | 148,196 | 92,305 | 17,575 | 19,158 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis modesta | 148,133 | 92,247 | 17,568 | 19,159 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis nana | 146,900 | 91,480 | 17,308 | 19,056 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis oliveriana | 148,175 | 92,273 | 17,534 | 19,184 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis pubescens | 148,260 | 91,819 | 17,619 | 19,411 | 113 | 79 | 4 | 30 | 37.4% |
Ligusticopsis rechingeriana | 148,525 | 91,813 | 17,654 | 19,529 | 113 | 79 | 4 | 30 | 37.30% |
Ligusticopsis scapiformis | 148,107 | 92,214 | 17,581 | 19,156 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis violacea | 148,190 | 91,811 | 16,335 | 20,022 | 113 | 79 | 4 | 30 | 37.50% |
Ligusticopsis wallichiana | 148,594 | 92,281 | 17,567 | 19,373 | 113 | 79 | 4 | 30 | 37.40% |
Ligusticum multivittatum | 148,262 | 91,571 | 17,631 | 19,530 | 113 | 79 | 4 | 30 | 37.40% |
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Liu, C.; Song, B.; Yong, F.; Xu, C.; Dong, Q.; Wang, X.; Sun, C.; Wang, Z. Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae). Genes 2025, 16, 823. https://doi.org/10.3390/genes16070823
Liu C, Song B, Yong F, Xu C, Dong Q, Wang X, Sun C, Wang Z. Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae). Genes. 2025; 16(7):823. https://doi.org/10.3390/genes16070823
Chicago/Turabian StyleLiu, Changkun, Boni Song, Feng Yong, Chengdong Xu, Quanying Dong, Xiaoyi Wang, Chao Sun, and Zhenji Wang. 2025. "Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae)" Genes 16, no. 7: 823. https://doi.org/10.3390/genes16070823
APA StyleLiu, C., Song, B., Yong, F., Xu, C., Dong, Q., Wang, X., Sun, C., & Wang, Z. (2025). Phylogenetic Analyses and Plastome Comparison to Confirm the Taxonomic Position of Ligusticum multivittatum (Apiaceae, Apioideae). Genes, 16(7), 823. https://doi.org/10.3390/genes16070823