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3,5-Dithiatricyclo[5.2.1.02,6]decan-4-one

EaStCHEM School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, UK
*
Author to whom correspondence should be addressed.
Molbank 2020, 2020(2), M1126; https://doi.org/10.3390/M1126
Submission received: 27 March 2020 / Revised: 16 April 2020 / Accepted: 22 April 2020 / Published: 24 April 2020
(This article belongs to the Section Structure Determination)

Abstract

:
The X-ray structure of the title compound has been determined and the structure shows an exo-configured planar dithiolanone ring. This is in contrast to the few previous dithiolanones to be characterised crystallographically, which are all twisted.

Graphical Abstract

1. Introduction

The title compound 1 was first mentioned in 1985 [1], when it was formed by mercuric acetate oxidation of the corresponding 1,3-dithiolane-2-thione 2 (Scheme 1). However, in that report it was treated as a synthetic intermediate and no analytical or spectroscopic data were given. A short time later, a second preparative method was described [2] involving reaction of the 1,2,3-trithiolane 3, formed from norbornene 4 and sulfur [3], with dichlorocarbene under phase-transfer conditions. In this report it was suggested that the trithiolane 3 reacts with dichlorocarbene to give the thione, 2, but the mechanism by which 2 was converted into 1 was unclear. Perhaps the simplest preparation of 1 involves direct treatment of norbornene 4 with diisopropyl xanthogen disulfide and the radical initiator azobis(isobuytronitrile) (AIBN), which affords 1 directly in 74% yield [4]. Although compound 1 has been characterised by melting point, 1H and 13C-NMR and IR spectroscopy, and elemental analysis [2], its X-ray structure has not been investigated. We have obtained compound 1 repeatedly in low yield as a by-product arising from oxidative degradation of the adduct, 5, formed from norbornene 4 and Bu3P × CS2. The ylene 5 can be exploited synthetically in a Wittig reaction with aldehydes to give 2-alkylidene-1,3-dithiolanes [5,6,7] or, in the presence of extra CS2, in a 1,3-dipolar cycloaddition process with dipolarophiles such as dimethyl acetylenedicarboxylate (DMAD) to give dihydrotetrathiafulvalenes [8]. Furthermore, it can also undergo hydrolysis to give the corresponding 1,3-dithiolane [9]. We describe here determination of the molecular and crystal structure of 1 by X-ray diffraction. The structure is compared with the few crystal structures previously reported for 1,3-dithiolan-2-ones.

2. Results

A sample of compound 1 suitable for X-ray diffraction was obtained from chromatographic purification of the product obtained by reaction of 5 with propargylaldehyde, HC≡C–CHO, and CS2 (<5% yield). The resulting molecular structure is shown in Figure 1 and selected bond lengths and angles are given in Table 1. The structure features an exo-configured dithiolanone ring, which is essentially planar with the expected long C-S bond lengths and correspondingly smaller internal angles at sulfur. The crystal structure features a centrosymmetric arrangement of four molecules in the unit cell (Figure 2). Rather surprisingly, a search of the Cambridge Structural Database (CSD, March 2020 update) revealed only five previous structures containing the 1,3-dithiolan-2-one fragment with at least one sp3 carbon in the ring (Figure 3). These are the parent compound 6 [10], the polychlorinated compound 7 in which the dithiolanone ring is tetrasubstituted [11], the bicyclic diester 8 with a trans-disubstituted dithiolanone ring [12], and the Diels–Alder dimer of 4,5-bis(methylene)-1,3-dithiolan-2-one 9 and the derived cobalt complex 10 [13], both of which have the dithiolanone ring fully substituted but with one spiro sp3 centre and one sp2 centre.
While comparison of the internal angles at sulfur and at C=O show all six compounds to have rather similar values, the key difference observed between the molecular structure of 1 and the previous structures 6–10 is the degree of planarity in the dithiolanone ring. This is readily quantified by examining the torsion angle S-C-C-S for the six compounds (Table 2). While the carbonyl C(2) carbon is completely planar in all cases, it is only in the case of 1 where the whole dithiolanone ring is fused cis to the rigid bicyclo[2.2.1] skeleton that all five ring atoms are essentially coplanar, corresponding to a S-C-C-S torsion angle near to zero. In all the other cases this torsion angle is significantly greater, corresponding to a twisting of the ring, and it appears that even in the absence of substituent effects in 6 this twisted conformation is preferred.
In summary, the X-ray crystal structure of the norbornane-fused 1,3-dithiolan-2-one 1 shows it to adopt an exo configuration with a planar heterocyclic ring, in contrast to the twisted shape adopted by the small number of other 1,3-dithiolan-2-ones for which crystal structures are known.

3. Experimental

3,5-Dithiatricyclo[5.2.1.02,6]decan-4-one (1): Crystal data for C8H10OS2, M = 186.28 g mol−1, colourless prism, crystal dimensions 0.25 × 0.12 × 0.05 mm, orthorhombic, space group Pna21, a = 13.134(6), b = 6.336(3), c = 9.999(4) Å, V = 832.1(6) Å3, Z = 4, Dcalc = 1.487 g cm−3, T = 93 K, R1 = 0.0430, Rw2 = 0.1051 for 1350 reflections with I > 2σ(I), and 101 variables, Rint 0.0530, Goodness of fit on F2 1.122. Data were collected using graphite monochromated Mo Kα radiation λ = 0.71075 Å and have been deposited at the Cambridge Crystallographic Data Centre as CCDC 1989785. The data can be obtained free of charge from the Cambridge Crystallographic Data Centre via http://www.ccdc.cam.ac.uk/getstructures. The structure was solved by direct methods and refined by full-matrix least-squares against F2 (SHELXL Version 2018/3 [14]). Hydrogen atoms were assigned riding isotropic displacement parameters and constrained to idealised geometries. The data did not allow determination of the polarity of the axis.

Author Contributions

N.S.K. prepared the compound; A.M.Z.S. collected the X-ray data and solved the structure; R.A.A. designed the experiments, analysed the data, and wrote the paper. All authors have read and agreed to the published version of the manuscript.

Conflicts of Interest

The authors declare no conflicts of interest.

References

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Scheme 1. Synthetic routes to 1.
Scheme 1. Synthetic routes to 1.
Molbank 2020 m1126 sch001
Figure 1. Two views of the molecular structure of 1 with numbering scheme (ORTEP probability ellipsoids at 50%).
Figure 1. Two views of the molecular structure of 1 with numbering scheme (ORTEP probability ellipsoids at 50%).
Molbank 2020 m1126 g001
Figure 2. Unit cell of 1 viewed along the c-axis showing the four molecules present.
Figure 2. Unit cell of 1 viewed along the c-axis showing the four molecules present.
Molbank 2020 m1126 g002
Figure 3. A survey of crystallographically characterised 1,3-dithiolan-2-ones with Cambridge Structural Database (CSD) reference codes.
Figure 3. A survey of crystallographically characterised 1,3-dithiolan-2-ones with Cambridge Structural Database (CSD) reference codes.
Molbank 2020 m1126 g003
Table 1. Selected bond lengths and angles.
Table 1. Selected bond lengths and angles.
BondLength/ÅAngleValue/°
C(1)–C(2)1.570(8)C(1)–C(2)–S(2)113.2(4)
C(1)–S(1)1.805(6)C(2)–S(2)–C(8)99.7(3)
S(1)–C(8)1.753(6)S(2)–C(8)–O(8)122.5(5)
C(8)–O(8)1.206(7)O(8)–C(8)–S(1)123.2 (5)
C(8)–S(2)1.775(6)S(2)–C(8)–S(1)114.4(3)
S(2)–C(2)1.798(6)C(8)–S(1)–C(1)100.4(3)
S(1)–C(1)–C(2)112.3(4)
Table 2. Key angles in the structures of dithiolanones (°).
Table 2. Key angles in the structures of dithiolanones (°).
CompoundC–S–C
Internal Angle
S–C(O)–S
Internal Angle
S–C–C–S
Torsion Angle
Reference
1100.4(3), 99.7(3)114.4(3)1.9(5)This work
696.61(5), 96.57(5)113.41(6)44.44(9)[10]
795.7(2), 94.6(2)114.8(2)48.2(3)[11]
894.7(2), 94.5(2)113.6(2)51.3(3)[12]
999.67(8), 98.62(8)114.1(1)11.6(2)[13]
1097.9(2), 97.2(3)113.7(3)36.2(4)[13]

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MDPI and ACS Style

Aitken, R.A.; Keddie, N.S.; Slawin, A.M.Z. 3,5-Dithiatricyclo[5.2.1.02,6]decan-4-one. Molbank 2020, 2020, M1126. https://doi.org/10.3390/M1126

AMA Style

Aitken RA, Keddie NS, Slawin AMZ. 3,5-Dithiatricyclo[5.2.1.02,6]decan-4-one. Molbank. 2020; 2020(2):M1126. https://doi.org/10.3390/M1126

Chicago/Turabian Style

Aitken, R. Alan, Neil S. Keddie, and Alexandra M. Z. Slawin. 2020. "3,5-Dithiatricyclo[5.2.1.02,6]decan-4-one" Molbank 2020, no. 2: M1126. https://doi.org/10.3390/M1126

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