Exosomal Protein Markers as Potential Non-Invasive Biomarkers for Colorectal Cancer
Abstract
1. Introduction
2. Results
2.1. Protein Concentrations in Exosomes Preparations
2.2. Evaluation of Exosome Extraction and Purity
2.3. Scanning Electron Microscopy Analysis of Isolated Exosomes
2.4. Quantitative Analysis of Exosomal Markers of Colorectal Cancer
3. Discussion
4. Materials and Methods
4.1. Materials
4.2. Plasma Isolation
4.3. Ultracentrifuge
4.4. Size Exclusion Chromatography
4.5. Commercial Exosome Isolation Kit
4.6. Protein Concentration Determination
4.7. Western Blot
4.8. Scanning Electron Microscope
4.9. Enzyme-Linked Immunosorbent Assay
4.10. Statistical Analysis
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| CRC | Colorectal cancer |
| UC | Ultracentrifugation |
| SEC | Size exclusion chromatography |
| ELISA | Enzyme linked immunosorbent assay |
| ESCRT | Endosomal sorting complex required for transport |
| ER | Endoplasmic reticulum |
| BCA | Bicinchoninic acid assay |
| DLS | Dynamic light scattering |
| CA | Cellulose acetate |
| SEM | Standard error of the mean |
References
- Pegtel, D.M.; Gould, S.J. Exosomes. Annu. Rev. Biochem. 2019, 88, 487–514. [Google Scholar] [CrossRef]
- Trams, E.G.; Lauter, C.J.; Salem, N.; Heine, U. Exfoliation of membrane ecto-enzymes in the form of micro-vesicles. Biochim. Biophys. Acta 1981, 645, 63–70. [Google Scholar] [CrossRef]
- Théry, C.; Zitvogel, L.; Amigorena, S. Exosomes: Composition, biogenesis and function. Nat. Rev. Immunol. 2002, 2, 569–579. [Google Scholar] [CrossRef]
- Kalluri, R. The biology and function of exosomes in cancer. J. Clin. Investig. 2016, 126, 1208–1215. [Google Scholar] [CrossRef] [PubMed]
- Kowal, J.; Tkach, M.; Théry, C. Biogenesis and secretion of exosomes. Curr. Opin. Cell Biol. 2014, 29, 116–125. [Google Scholar] [CrossRef]
- Thakur, B.K.; Zhang, H.; Becker, A.; Matei, I.; Huang, Y.; Costa-Silva, B.; Zheng, Y.; Hoshino, A.; Brazier, H.; Xiang, J.; et al. Double-stranded DNA in exosomes: A novel biomarker in cancer detection. Cell Res. 2014, 24, 766–769. [Google Scholar] [CrossRef] [PubMed]
- Van Niel, G.; Porto-Carreiro, I.; Simões, S.; Raposo, G. Exosomes: A common pathway for a specialized function. J. Biochem. 2006, 140, 13–21. [Google Scholar] [CrossRef]
- Lai, J.J.; Chau, Z.L.; Chen, S.; Hill, J.J.; Korpany, K.V.; Liang, N.; Lin, L.; Lin, Y.; Liu, J.K.; Liu, Y.; et al. Exosome processing and characterization approaches for research and technology development. Adv. Sci. 2022, 9, 2103222. [Google Scholar] [CrossRef] [PubMed]
- Muller, L.; Hong, C.S.; Stolz, D.B.; Watkins, S.C.; Whiteside, T.L. Isolation of biologically-active exosomes from human plasma. J. Immunol. Methods 2014, 411, 55–65. [Google Scholar] [CrossRef]
- Livshits, M.; Khomyakova, E.; Evtushenko, E.; Lazarev, V.N.; Kulemin, N.A.; Semina, S.E.; Generozov, E.V.; Govorun, V.M. Isolation of exosomes by differential centrifugation: Theoretical analysis of a commonly used protocol. Sci. Rep. 2015, 5, 17319, Correction in Sci. Rep. 2016, 6, 21447. [Google Scholar] [CrossRef]
- Ludwig, A.K.; Giebel, B. Exosomes: Small vesicles participating in intercellular communication. Int. J. Biochem. Cell Biol. 2012, 44, 11–15. [Google Scholar] [CrossRef]
- Simons, M.; Raposo, G. Exosomes—Vesicular carriers for intercellular communication. Curr. Opin. Cell Biol. 2009, 21, 575–581. [Google Scholar] [CrossRef]
- Théry, C.; Witwer, K.W.; Aikawa, E.; Alcaraz, M.J.; Anderson, J.D.; Andriantsitohaina, R.; Antoniou, A.; Arab, T.; Archer, F.; Atkin-Smith, G.K.; et al. Minimal information for studies of extracellular vesicles 2018 (MISEV2018): A position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. J. Extracell. Vesicles 2018, 7, 1535750. [Google Scholar] [CrossRef]
- Overbye, A.; Skotland, T.; Koehler, C.J.; Thiede, B.; Seierstad, T.; Berge, V.; Sandvig, K.; Llorente, A. Identification of prostate cancer biomarkers in urinary exosomes. Oncotarget 2015, 6, 30357–30376. [Google Scholar] [CrossRef]
- Titu, S.; Gata, V.A.; Decea, R.M.; Mocan, T.; Dina, C.; Irimie, A.; Lisencu, C.I. Exosomes in colorectal cancer: From physiology to clinical applications. Int. J. Mol. Sci. 2023, 24, 4382. [Google Scholar] [CrossRef]
- Xiao, Y.; Li, Y.; Yuan, Y.; Liu, B.; Pan, S.; Liu, Q.; Qi, X.; Zhou, H.; Dong, W.; Jia, L. The potential of exosomes derived from colorectal cancer as a biomarker. Clin. Chim. Acta 2019, 490, 186–193. [Google Scholar] [CrossRef]
- Xiao, Y.; Zhong, J.; Zhong, B.; Huang, J.; Jiang, L.; Jiang, Y.; Yuan, J.; Sun, J.; Dai, L.; Yang, C.; et al. Exosomes as potential sources of biomarkers in colorectal cancer. Cancer Lett. 2020, 476, 13–22. [Google Scholar] [CrossRef] [PubMed]
- Kalluri, R.; LeBleu, V.S. The biology, function, and biomedical applications of exosomes. Science 2020, 367, eaau6977. [Google Scholar] [CrossRef] [PubMed]
- Nouri, Z.; Barfar, A.; Perseh, S.; Motasadizadeh, H.; Maghsoudian, S.; Fatahi, Y.; Nouri, K.; Yektakasmaei, M.P.; Dinarvand, R.; Atyabi, F. Exosomes as therapeutic and drug delivery vehicle for neurodegenerative diseases. J. Nanobiotechnol. 2024, 22, 463. [Google Scholar] [CrossRef]
- Ferreira, D.; Moreira, J.N.; Rodrigues, L.R. New advances in exosome-based targeted drug delivery systems. Crit. Rev. Oncol. Hematol. 2022, 172, 103628. [Google Scholar] [CrossRef] [PubMed]
- Abramowicz, A.; Widlak, P.; Pietrowska, M. Proteomic analysis of exosomal cargo: The challenge of high purity vesicle isolation. Mol. BioSyst. 2016, 12, 1407–1419. [Google Scholar] [CrossRef]
- Chen, B.Y.; Sung, C.W.H.; Chen, C.; Cheng, C.M.; Lin, D.P.C.; Huang, C.T.; Hsu, M.Y. Advances in exosomes technology. Clin. Chim. Acta 2019, 493, 14–19. [Google Scholar] [CrossRef] [PubMed]
- Doyle, L.M.; Wang, M.Z. Overview of extracellular vesicles, their origin, composition, purpose, and methods for exosome isolation and analysis. Cells 2019, 8, 727. [Google Scholar] [CrossRef] [PubMed]
- Liu, W.Z.; Ma, Z.J.; Kang, X.W. Current status and outlook of advances in exosome isolation. Anal. Bioanal. Chem. 2022, 414, 7123–7141. [Google Scholar] [CrossRef]
- Svedberg, T. The Ultra-Centrifuge and the Study of High-Molecular Compounds. Nature 1937, 139, 1051–1062. [Google Scholar] [CrossRef]
- Huda, M.N.; Nafiujjaman, M.; Deaguero, I.G.; Okonkwo, J.; Hill, M.L.; Kim, T.; Nurunnabi, M. Potential use of exosomes as diagnostic biomarkers and in targeted drug delivery: Progress in clinical and preclinical applications. ACS Biomater. Sci. Eng. 2021, 7, 2106–2149. [Google Scholar] [CrossRef]
- Taylor, D.D.; Shah, S. Methods of isolating extracellular vesicles impact downstream analyses of their cargoes. Methods 2015, 87, 3–10. [Google Scholar] [CrossRef]
- Sidhom, K.; Obi, P.O.; Saleem, A. A review of exosomal isolation methods: Is size exclusion chromatography the best option? Int. J. Mol. Sci. 2020, 21, 6466. [Google Scholar] [CrossRef]
- Gandham, S.; Su, X.; Wood, J.; Nocera, A.L.; Alli, S.C.; Milane, L.; Zimmerman, A.; Amiji, M.; Ivanov, A.R. Technologies and standardization in research on extracellular vesicles. Trends Biotechnol. 2020, 38, 1066–1098. [Google Scholar] [CrossRef]
- Böing, A.N.; van der Pol, E.; Grootemaat, A.E.; Coumans, F.A.W.; Sturk, A.; Nieuwland, R. Single-step isolation of extracellular vesicles by size-exclusion chromatography. J. Extracell. Vesicles 2014, 3, 23430. [Google Scholar] [CrossRef] [PubMed]
- Yang, J.; Zhang, Y.; Gao, X.; Yuan, Y.; Zhao, J.; Zhou, S.; Wang, H.; Wang, L.; Xu, G.; Li, X.; et al. Plasma-derived exosomal ALIX as a novel biomarker for diagnosis and classification of pancreatic cancer. Front. Oncol. 2021, 11, 628346. [Google Scholar] [CrossRef] [PubMed]
- Siegel, R.L.; Wagle, N.S.; Cercek, A.; Smith, R.A.; Jemal, A. Colorectal cancer statistics, 2023. CA Cancer J. Clin. 2023, 73, 233–254. [Google Scholar] [CrossRef] [PubMed]
- Dekker, E.; Tanis, P.J.; Vleugels, J.L.A.; Kasi, P.M.; Wallace, M.B. Colorectal cancer. Lancet 2019, 394, 1467–1480. [Google Scholar] [CrossRef] [PubMed]
- Hanna, M.; Dey, N.; Grady, W.M. Emerging tests for noninvasive colorectal cancer screening. Clin. Gastroenterol. Hepatol. 2023, 21, 604–616. [Google Scholar] [CrossRef]
- Hon, K.W.; Abu, N.; Ab Mutalib, N.S.; Jamal, R. Exosomes as potential biomarkers and targeted therapy in colorectal cancer: A mini-review. Front. Pharmacol. 2017, 8, 583. [Google Scholar] [CrossRef]
- Sun, Y.; Xiao, W.; Yu, Y.; Jiang, Y.; Xiao, Z.; Huang, D.; Zhong, T.; Li, J.; Xiang, X.; He, Y.; et al. Colorectal cancer-derived extracellular vesicles containing HSP70 enhance macrophage phagocytosis by up-regulating MARCO expression. Exp. Cell Res. 2023, 426, 113565. [Google Scholar] [CrossRef]
- An, M.; Wu, J.; Zhu, J.; Lubman, D.M. Comparison of an optimized ultracentrifugation method versus size-exclusion chromatography for isolation of exosomes from human serum. J. Proteome Res. 2018, 17, 3599–3605. [Google Scholar] [CrossRef]
- Coughlan, C.; Bruce, K.D.; Burgy, O.; Boyd, T.D.; Michel, C.R.; Garcia-Perez, J.E.; Adame, V.; Anton, P.; Bettcher, B.M.; Chial, H.J.; et al. Exosome isolation by ultracentrifugation and precipitation and techniques for downstream analyses. Curr. Protoc. Cell Biol. 2020, 88, e110. [Google Scholar] [CrossRef]
- Baranyai, T.; Herczeg, K.; Onódi, Z.; Voszka, I.; Módos, K.; Marton, N.; Nagy, G.; Mäger, I.; Wood, M.J.; El Andaloussi, S.; et al. Isolation of exosomes from blood plasma: Qualitative and quantitative comparison of ultracentrifugation and size exclusion chromatography methods. PLoS ONE 2015, 10, e0145686. [Google Scholar] [CrossRef]
- Hong, C.S.; Funk, S.; Muller, L.; Boyiadzis, M.; Whiteside, T.L. Isolation of biologically active and morphologically intact exosomes from plasma of patients with cancer. J. Extracell. Vesicles 2016, 5, 29289. [Google Scholar] [CrossRef]
- Nordin, J.Z.; Lee, Y.; Vader, P.; Mäger, I.; Johansson, H.J.; Heusermann, W.; Wiklander, O.P.; Hällbrink, M.; Seow, Y.; Bultema, J.J.; et al. Ultrafiltration with size-exclusion liquid chromatography for high yield isolation of extracellular vesicles preserving intact biophysical and functional properties. Nanomedicine 2015, 11, 879–883. [Google Scholar] [CrossRef]
- Yang, Y.; Wang, Y.; Wei, S.; Zhou, C.; Yu, J.; Wang, G.; Wang, W.; Zhao, L. Extracellular vesicles isolated by size-exclusion chromatography present suitability for RNomics analysis in plasma. J. Transl. Med. 2021, 19, 104. [Google Scholar] [CrossRef] [PubMed]
- Yang, D.; Zhang, W.; Zhang, H.; Zhang, F.; Chen, L.; Ma, L.; Larcher, L.M.; Chen, S.; Liu, N.; Zhao, Q.; et al. Progress, opportunity, and perspective on exosome isolation—Efforts for efficient exosome-based theranostics. Theranostics 2020, 10, 3684–3707. [Google Scholar] [CrossRef]
- Chanteloup, G.; Cordonnier, M.; Isambert, N.; Bertaut, A.; Hervieu, A.; Hennequin, A.; Luu, M.; Zanetta, S.; Coudert, B.; Bengrine, L.; et al. Monitoring HSP70 exosomes in cancer patients’ follow up: A clinical prospective pilot study. J. Extracell. Vesicles 2020, 9, 1766192. [Google Scholar] [CrossRef]
- Alix-Panabières, C.; Vendrell, J.-P.; Slijper, M.; Pellé, O.; Barbotte, E.; Mercier, G.; Jacot, W.; Fabbro, M.; Pantel, K. Full-length cytokeratin-19 is released by human tumor cells: A potential role in metastatic progression of breast cancer. Breast Cancer Res. 2009, 11, R39. [Google Scholar] [CrossRef]
- Povoski, S.P.; Hatzaras, I.S.; Mojzisik, C.M.; Martin, E.W. Oncologic theranostics: Recognition of this concept in antigen-directed cancer therapy for colorectal cancer with anti-TAG-72 monoclonal antibodies. Expert Rev. Mol. Diagn. 2011, 11, 667–670. [Google Scholar] [CrossRef]
- Streppel, M.M.; Vincent, A.; Mukherjee, R.; Campbell, N.R.; Chen, S.-H.; Konstantopoulos, K.; Goggins, M.G.; Van Seuningen, I.; Maitra, A.; Montgomery, E.A. Mucin 16 (cancer antigen 125) expression in human tissues and cell lines and correlation with clinical outcome in adenocarcinomas of the pancreas, esophagus, stomach, and colon. Hum. Pathol. 2012, 43, 1755–1763. [Google Scholar] [CrossRef] [PubMed]
- Njemini, R.; Bautmans, I.; Onyema, O.O.; Van Puyvelde, K.; Demanet, C.; Mets, T. Circulating heat shock protein 70 in health, aging and disease. BMC Immunol. 2011, 12, 24. [Google Scholar] [CrossRef] [PubMed]
- Guardado-Luevanos, I.; Haro, A.J.; Godínez-Rubí, M.; Santos, J.A.P.-D.L.; Aguirre-Macías, J.; Soltero-Chávez, D.P.; Padilla-Rosas, M.; Nava-Villalba, M. Multiple calcifying hyperplastic dental follicles: A major diagnostic consideration in multiple pericoronal lesions—Report of two cases. BMC Oral Health 2020, 20, 159. [Google Scholar] [CrossRef]







| Method Used for Isolation | Protein Level (mg/mL) |
|---|---|
| Ultracentrifugation | 0.919 |
| Chromatography SEC | 1.036 |
| Exosome isolation kit | 1.161 |
| Characteristics | CRC Patients | Control Subjects |
|---|---|---|
| Number, n | 40 | 40 |
| Sex, n (%) Female Male | 16 (40.0%) 24 (60.0%) | 23 (57.5%) 17 (42.5%) |
| Age, mean (±SD) Female Male Overall | 61.0 (9.2) 61.5 (10.2) 61.3 (9.7) | 62.3 (5.6) 65.6 (5.6) 63.8 (5.8) |
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Skrzypek, M.; Piotrzkowska, D.; Adamkiewicz, J.; Prusisz, M.; Bijak, M.; Gornik, L.; Dziki, L.; Majsterek, I. Exosomal Protein Markers as Potential Non-Invasive Biomarkers for Colorectal Cancer. Int. J. Mol. Sci. 2025, 26, 11060. https://doi.org/10.3390/ijms262211060
Skrzypek M, Piotrzkowska D, Adamkiewicz J, Prusisz M, Bijak M, Gornik L, Dziki L, Majsterek I. Exosomal Protein Markers as Potential Non-Invasive Biomarkers for Colorectal Cancer. International Journal of Molecular Sciences. 2025; 26(22):11060. https://doi.org/10.3390/ijms262211060
Chicago/Turabian StyleSkrzypek, Maciej, Danuta Piotrzkowska, Julia Adamkiewicz, Mateusz Prusisz, Michal Bijak, Leslaw Gornik, Lukasz Dziki, and Ireneusz Majsterek. 2025. "Exosomal Protein Markers as Potential Non-Invasive Biomarkers for Colorectal Cancer" International Journal of Molecular Sciences 26, no. 22: 11060. https://doi.org/10.3390/ijms262211060
APA StyleSkrzypek, M., Piotrzkowska, D., Adamkiewicz, J., Prusisz, M., Bijak, M., Gornik, L., Dziki, L., & Majsterek, I. (2025). Exosomal Protein Markers as Potential Non-Invasive Biomarkers for Colorectal Cancer. International Journal of Molecular Sciences, 26(22), 11060. https://doi.org/10.3390/ijms262211060

