Search Results (62)

This study investigates the waste-free bioconversion of glucose to erythritol using the UV-mutagenized strain Yarrowia lipolytica Wratislavia KI UV15. This research focuses on optimizing fermentation parameters to enhance erythritol yield, with a key emphasis on utilizing post-crystallization erythritol filtrate as a primary carbon source, promoting a cost-effective and sustainable approach to erythritol production. The experimental design included systematic variations in ammonium sulfate concentration, yeast extract supplementation, and initial glucose concentration. The results demonstrate that the UV15 strain achieves high erythritol production efficiency. An optimal nitrogen source concentration (3.1 g/L) and reduced yeast extract levels (0.25 g/L) provided the best results, achieving a maximum erythritol concentration of 174.8 g/L with a yield of 58.2%. Furthermore, lowering the initial glucose concentration further improved process efficiency, confirming the feasibility of using post-crystallization filtrate as an effective and sustainable carbon source. These findings highlight the biotechnological potential of Y. lipolytica UV15 in erythritol production, demonstrating its adaptability to waste-derived substrates and advancing the development of economically viable, environmentally sustainable production methods. Full article

A microbial fuel cell (MFC) is a bio-electrochemical system that utilizes electroactive microorganisms to generate electricity. These microorganisms, which convert the energy stored in substrates such as wastewater into electricity, grow on the anode. To ensure biocompatibility, anodes are typically made from carbon-based materials. Therefore, a carbon-based material (by-product of coconut processing) was selected for testing in this study. The anode was prepared by bonding activated coconut carbon with carbon paint on a glass electrode. The aim of this study was to analyze the feasibility of using an electrode prepared in this manner as a surface layer on the anode of an MFC. The performance of an electrode coated only with carbon paint was also evaluated. These two electrodes were compared with a carbon felt electrode, which is commonly used as an anode material in MFCs. In this research, the MFC was fed with a by-product of yeast production, namely a molasses decoction from yeast processing. Measurements were conducted in a standard two-chamber glass MFC with a glass membrane separating the chambers. During the experiment, parameters such as start-up time, cell voltage during MFC start-up, output cell voltage, and power density curves were analyzed. The carbon paint-coated electrode with the activated coconut carbon additive demonstrated operating parameters similar to those of the carbon felt electrode. The results indicate that it is possible to produce electrodes (on a base of by-product of coconut processing) for MFCs using a painting method; however, to achieve a performance comparable to carbon felt, the addition of activated coconut carbon is necessary. This study demonstrates the feasibility of forming a biocompatible layer on various surfaces. Incorporating activated coconut carbon does not complicate the anode fabrication process, as fine ACC grains can be directly applied to the wet carbon paint layer. Additionally, the use of carbon paint as a conductive layer for the active anode in MFCs offers versatility in designing electrodes of various shapes, enabling them to be coated with a suitable active and conductive layer to promote biofilm formation. Moreover, the findings of this study confirm that waste-derived materials can be effectively utilized as electrode components in MFC anodes. The results validate the chosen research approach and emphasize the potential for further investigations in this field, contributing to the development of cost-efficient electrodes derived from by-products for MFC applications. Full article

Ammonia, essential for fertilizers and energy storage, is mainly produced through the energy-demanding Haber–Bosch process. Microbial production offers a sustainable alternative, but natural yeast cells have not yet demonstrated success. This study aimed to enhance ammonia production in Saccharomyces cerevisiae by optimizing amino acid utilization through its deamination metabolism. Adaptive laboratory evolution is a method for rapidly generating desirable phenotypes through metabolic and transcriptional reorganization. We applied it to the efficiently fermenting S. cerevisiae strain CEN.PK113-7D using an unbalanced carbon/nitrogen medium to impose selective pressure. We selected several evolved strains with a 3–5-fold increase in amino acid utilization and ammonia secretion. The multi-step bioreactor strategy of the evolved strain AAV6, supplemented with concentrated nitrogen sources, resulted in the production of 1.36 g/L of ammonia, a value in line with levels produced by other microbial systems. This proof-of-concept study suggests that yeast-based processes can be adapted straightforwardly to ammonia production from high-protein waste derived from several sources. Full article

Meyerozyma guilliermondii is an interesting oleaginous yeast with considerable potential for biotechnological applications. This yeast demonstrates the ability to utilize palm acid oil (PAO), a low-cost and renewable feedstock, as a carbon source, making it a sustainable candidate for single-cell oil production. Under optimal conditions with 4% of PAO, M. guilliermondii can accumulate lipids to approximately 45% of its cell dry weight (CDW). Notably, the expression level of PEX14, a gene associated with peroxisomal biogenesis, increases with higher PAO concentrations, coinciding with the formation of multiple small lipid bodies. These findings highlight the metabolic adaptability of M. guilliermondii and its potential for industrial lipid production using waste-derived feedstocks. Full article

This study investigates the potential of microbial-induced calcium carbonate precipitation (MICP) for soil stabilization and heavy metal immobilization, utilizing landfill leachate-derived ureolytic consortium. Experimental conditions identified yeast extract-based media as most effective for bacterial growth, urease activity, and calcite formation compared to nutrient broth and brown sugar media. Optimal MICP conditions, at pH 8–9 and 30 °C, supported the most efficient biomineralization. The process facilitated the removal of Cd²⁺ (99.10%) and Ni²⁺ (78.33%) while producing stable calcite crystals that enhanced soil strength. Thermal analyses (thermogravimetric analysis (TGA) and differential scanning calorimetry (DSC)) confirmed the successful production of CaCO₃ and its role in improving soil stability. DSC analysis revealed endothermic and exothermic peaks, including a significant exothermic peak at 444 °C, corresponding to the thermal decomposition of CaCO₃ into CO₂ and CaO, confirming calcite formation. TGA results showed steady weight loss, consistent with the breakdown of CaCO₃, supporting the formation of stable carbonates. The MICP treatment significantly increased soil strength, with the highest surface strength observed at 440 psi, correlating with the highest CaCO₃ content (18.83%). These findings underscore the effectiveness of MICP in soil stabilization, pollutant removal, and improving geotechnical properties. Full article

Endocrine-disrupting compounds (EDCs) are emerging pollutants that can potentially accumulate in aquatic ecosystems at significant levels, with the potential to impact the health of both animals and humans. Many scientists have correlated human exposure to high concentrations of EDCs with critical physiological impacts, including infertility, thyroid imbalance, early sexual development, endometriosis, diabetes, and obesity. Several substances, such as heavy metals, belong to this family, ranging from natural to synthetic compounds, including pesticides, pharmaceuticals, and plastic-derived compounds. Domestic sewage represents a significant source of EDCs in the surrounding aquatic ecosystems. To this day, most rural and urban domestic wastewater in the municipality of Maricá is directly discharged into local aquatic environments without any treatment. The present study aimed to assess the potential contamination of the riverine and lagoonal environment in the municipality of Maricá. Water and sediment samples were collected seasonally at 18 sites along the Maricá watershed and the main lagoon, into which most of the watershed’s contributors flow. Water physico-chemical parameters (pH, reduction–oxidation potential—Eh, dissolved oxygen levels, salinity, turbidity, temperature, and fecal coliforms) were analyzed to characterize the urban influence on the aquatic environment. Sediment samples were also analyzed for grain size, total organic carbon percentage, potential bioavailable fraction of trace metals (Cd, Pb, Cu, Cr, Hg, Ni, Zn), and metalloid As. Finally, the sediment toxicity was assessed using yeast estrogen screen (YES) assays. The results obtained already demonstrate the presence of estrogenic effects and raise concerns about water quality. The current study indicates that, despite the absence of agricultural and industrial activities in the city of Maricá, EDCs are already present and have the potential to impact the local ecosystem, posing potential risks to human health. Full article

Blueberry plants are among the most important fruit-bearing shrubs, but they have shallow, hairless roots that are not conducive to water and nutrient uptake, especially under drought conditions. Therefore, the mechanism underlying blueberry root drought tolerance should be clarified. Hence, we established a yeast expression library comprising blueberry genes associated with root responses to drought stress. High-throughput sequencing technology enabled the identification of 1475 genes potentially related to drought tolerance. A subsequent KEGG enrichment analysis revealed 77 key genes associated with six pathways: carbon and energy metabolism, biosynthesis of secondary metabolites, nucleotide and amino acid metabolism, genetic information processing, signal transduction, and material transport and catabolism. Metabolomic profiling of drought-tolerant yeast strains under drought conditions detected 1749 differentially abundant metabolites (DAMs), including several up-regulated metabolites (organic acids, amino acids and derivatives, alkaloids, and phenylpropanoids). An integrative analysis indicated that genes encoding several enzymes, including GALM, PK, PGLS, and PIP5K, modulate key carbon metabolism-related metabolites, including D-glucose 6-phosphate and β-D-fructose 6-phosphate. Additionally, genes encoding FDPS and CCR were implicated in terpenoid and phenylalanine biosynthesis, which affected metabolite contents (e.g., farnesylcysteine and tyrosine). Furthermore, genes for GST and GLT1, along with eight DAMs, including L-γ-glutamylcysteine and L-ornithine, contributed to amino acid metabolism, while genes encoding NDPK and APRT were linked to purine metabolism, thereby affecting certain metabolites (e.g., inosine and 3′,5′-cyclic GMP). Overall, the yeast functional screening system used in this study effectively identified genes and metabolites influencing blueberry root drought tolerance, offering new insights into the associated molecular mechanisms. Full article

Zygosaccharomyces rouxii is a typical aroma-producing yeast in food brewing, but it has low heat resistance and poor proliferation ability at high temperature. Trehalose is generally considered to be a protective agent that helps stable yeast cells resist heat shock stress, but its functional mechanism for yeast cells in the adaptation period under heat stress is unclear. In this study, the physiological metabolism changes, specific gene transcription expression characteristics, and transcriptome differences of Z. rouxii under different carbon sources under high-temperature stress (40 °C) were compared to explore the mechanism of trehalose inducing Z. rouxii to recover and proliferate under high-temperature stress during the adaptation period. The results showed that high concentration of trehalose (20% Tre) could not be used as the main carbon source for the proliferation of Z. rouxii under long-term high-temperature stress, but it helped to maintain the stability of the cell population. The intracellular trehalose of Z. rouxii was mainly derived from the synthesis and metabolism of intracellular glucose, and the extracellular acetic acid concentration showed an upward trend with the improvement of yeast growth. A high concentration of trehalose (20% Tre) can promote the expression of high glucose receptor gene GRT2 (12.0-fold) and induce the up-regulation of HSF1 (27.1-fold), MSN4 (58.9-fold), HXK1 (8.3-fold), and other signal transduction protein genes, and the increase of trehalose concentration will maintain the temporal up-regulation of these genes. Transcriptome analysis showed that trehalose concentration and the presence of glucose had a significant effect on the gene expression of Z. rouxii under high-temperature stress. In summary, trehalose assists Z. rouxii in adapting to high temperature by changing gene expression levels, and assists Z. rouxii in absorbing glucose to achieve cell proliferation. Full article

A microbial fuel cell (MFC) is a bioelectrochemical system that generates electrical energy using electroactive micro-organisms. These micro-organisms convert chemical energy found in substances like wastewater into electrical energy while simultaneously treating the wastewater. Thus, MFCs serve a dual purpose, generating energy and enhancing wastewater treatment processes. Due to the high construction costs of MFCs, there is an ongoing search for alternative solutions to improve their efficiency and reduce production costs. This study aimed to improvement of MFC operation and minimize MFC costs by using anode material derived from by-products. Therefore, the proton exchange membrane (PEM) was abandoned, and a stainless steel cathode and a carbon anode were used. To improve the cell’s efficiency, a carbon fiber anode supplemented with activated coconut carbon (ACCcfA) was utilized. Micro-organisms were provided with molasses decoction (a by-product of yeast production) to supply the necessary nutrients for optimal functioning. For comparison, an anode made solely of carbon fibers (CFA) and an anode composed of activated carbon grains without carbon fibers (ACCgA) were also tested. The results indicated that the ACCcfA system achieved the highest cell voltage, power density, and COD reduction efficiency (compared to the CFA and ACCgA electrodes). Additionally, the study demonstrated that incorporating activated coconut carbon significantly enhances the performance of the MFC when powered by a by-product of yeast production. Full article

Rice straw is not easy to decompose, it takes a long time to compost, and the anaerobic bacteria involved in the decomposition process produce a large amount of carbon dioxide (CO₂), indicating that applications for rice straw need to be developed. Recycling rice straw in agricultural crops is an opportunity to increase the sustainability of grain production. Several studies have shown that the probiotic population gradually decreases in the soil, leading to an increased risk of plant diseases and decreased biomass yield. Because the microorganisms in the soil are related to the growth of plants, when the soil microbial community is imbalanced it seriously affects plant growth. We investigated the feasibility of using composted rice stalks to artificially cultivate microorganisms obtained from the Oryza sativa-planted environment for analyzing the mycobiota and evaluating applications for sustainable agriculture. Microbes obtained from the water-submerged part (group-A) and soil part (group-B) of O. sativa were cultured in an artificial medium, and the microbial diversity was analyzed with internal transcribed spacer sequencing. Paddy field soil was mixed with fermented paddy straw compost, and the microbes obtained from the soil used for O. sativa planting were designated as group-C. The paddy fields transplanted with artificially cultured microbes from group-A were designated as group-D and those from group-B were designated as group-E. We found that fungi and yeasts can be cultured in groups-A and -B. These microbes altered the soil mycobiota in the paddy fields after transplantation in groups-D and -E compared to groups-A and -B. Development in O. sativa post treatment with microbial transplantation was observed in the groups-D and -E compared to group-C. These results showed that artificially cultured microorganisms could be efficiently transplanted into the soil and improve the mycobiota. Phytohormones were involved in improving O. sativa growth and rice yield via the submerged part-derived microbial medium (group-D) or the soil part-derived microbial medium (group-E) treatments. Collectively, these fungi and yeasts may be applied in microbial transplantation via rice straw fermentation to repair soil mycobiota imbalances, facilitating plant growth and sustainable agriculture. These fungi and yeasts may be applied in microbial transplantation to repair soil mycobiota imbalances and sustainable agriculture. Full article

Dietary supplementation of yeast-derived mannan-rich fraction (MRF) could improve the gastrointestinal health and production efficiency of broilers, and, consequently, lower the environmental impacts of chicken production. The objective of this meta-analysis was to quantify the retrospective effects of feeding MRF (Actigen^®, Alltech Inc., Nicholasville, KY) on the production performance of broilers. The meta-analysis database included 27 studies and consisted of 66 comparisons of MRF-supplemented diets vs. basal (i.e., negative control) and antibiotic-supplemented (i.e., positive control) diets. A total of 34,596 broilers were involved in the comparisons and the average final age of the birds was 35 days. Additionally, the impact of feeding MRF on the carbon footprint (feed and total emission intensities) of chicken production was evaluated using the meta-analysis results of broiler performance (MRF vs. basal diets) to develop a scenario simulation that was analyzed by a life cycle assessment (LCA) model. A database of all trials (MRF vs. basal and antibiotic diets) indicated that feeding MRF increased (p < 0.01) average daily feed intake (ADFI; +3.7%), final body weight (FBW; +3.5%), and average daily gain (ADG; 4.1%) and improved (p < 0.01) feed conversion ratio (FCR; −1.7%) without affecting (p > 0.05) mortality. A subdatabase of MRF vs. basal diets indicated that dietary MRF increased ADFI (+4.5%), FBW (+4.7%), and ADG (+6.3%) and improved FCR (−2.2%) and mortality (−21.1%). For the subdatabase of MRF vs. antibiotic diets, both treatments exhibited equivalent effects (p > 0.05) on broiler performance parameters, suggesting that MRF could be an effective alternative to in-feed antibiotics. Subgroup analysis revealed that different study factors (year of study, breed/strain, production challenges, and MRF feeding duration) influenced the effect of dietary MRF on broiler performance. Simulated life cycle analysis (LCA) indicated that feeding MRF decreased feed and total emission intensities, on average, by −2.4% and −2.1%, respectively. In conclusion, these results demonstrate that dietary MRF is an effective nutritional solution for improving broiler performance, an effective alternative to in-feed antibiotic growth promoters, and reduces the environmental impact of poultry meat production. Full article

Single-cell oils (SCOs) offer a promising alternative to conventional biodiesel feedstocks. The main objective of this work was to obtain SCOs suitable for biodiesel production from the oleaginous yeast Rhodotorula glutinis R4 using sugarcane vinasse from a local sugar-derived alcohol industry as the substrate. Additionally, crude glycerol from the local biodiesel industry was evaluated as a low-cost carbon source to replace expensive glucose and as a strategy for integrating the bioethanol and biodiesel industries for the valorization of both agro-industrial wastes. R4 achieved a high lipid accumulation of 88% and 60% (w/w) in vinasse-based culture media, containing 10% and 25% vinasse with glucose (40 g L⁻¹), respectively. When glucose was replaced with crude glycerol, R4 showed remarkable lipid accumulation (40%) and growth (12.58 g L⁻¹). The fatty acids profile of SCOs showed a prevalence of oleic acid (C18:1), making them suitable for biodiesel synthesis. Biodiesel derived from R4 oils exhibits favorable characteristics, including a high cetane number (CN = 55) and high oxidative stability (OS = 13 h), meeting international biodiesel standards (ASTMD6751 and EN14214) and ensuring its compatibility with diesel engines. R. glutinis R4 produces SCOs from vinasse and crude glycerol, contributing to the circular economy for sustainable biodiesel production. Full article

The oleaginous yeast Yarrowia lipolytica is a prominent subject of biorefinery research due to its exceptional performance in oil production, exogenous protein secretion, and utilization of various inexpensive carbon sources. Many CRISPR/Cas9 genome-editing systems have been developed for Y. lipolytica to meet the high demand for metabolic engineering studies. However, these systems often necessitate an additional outgrowth step to achieve high gene editing efficiency. In this study, we introduced the eSpCas9 protein, derived from the Streptococcus pyogenes Cas9(SpCas9) protein, into the Y. lipolytica genome to enhance gene editing efficiency and fidelity, and subsequently explored the optimal expression level of eSpCas9 gene by utilizing different promoters and selecting various growth periods for yeast transformation. The results demonstrated that the integrated eSpCas9 gene editing system significantly enhanced gene editing efficiency, increasing from 16.61% to 86.09% on TRP1 and from 33.61% to 95.19% on LIP2, all without the need for a time-consuming outgrowth step. Furthermore, growth curves and dilution assays indicated that the consistent expression of eSpCas9 protein slightly suppressed the growth of Y. lipolytica, revealing that strong inducible promoters may be a potential avenue for future research. This work simplifies the gene editing process in Y. lipolytica, thus advancing its potential as a natural product synthesis chassis and providing valuable insights for other comparable microorganisms. Full article

The biosynthesis of citric acid (CA) and its derivatives is of great interest due to its wide range of applications in various manufacturing sectors. The fungus Aspergillus niger is mainly used for the commercial production of CA, using sucrose and molasses as the primary carbon sources. Since the 1960s, intensive research has been underway to introduce Yarrowia lipolytica yeast as an alternative to traditional fungal technology. This review discusses the practical uses of CA and its derivatives. Also, the challenges and developments that have led to efficient and green CA synthesis technologies using Y. lipolytica are outlined. The nutrient medium requirements and the use of various carbon sources, encompassing pure substrates and industry, agriculture, and food waste are considered. Additionally, the choice and improvement of strain producers, including efficient mutagenesis, genetic modification, and screening methods, are discussed. Full article

The transition from fossil resources to renewable biomass for the production of valuable chemicals and biobased fuels is a crucial step towards carbon neutrality. Squalene, a valuable chemical extensively used in the energy, healthcare, and pharmaceutical fields, has traditionally been isolated from the liver oils of deep-sea sharks and plant seed oils. In this study, a biochemical synergistic conversion strategy was designed and realized to convert glucose to squalene by combining fermentation technology in yeast with reductive coupling treatment of dienes. First, glucose derived from hydrolysis of cellulose was used as a renewable resource, using genetically engineered Saccharomyces cerevisiae as the initial biocatalyst to produce β-farnesene with a titer of 27.6 g/L in a 2.5 L bioreactor. Subsequently, intermediate β-farnesene was successfully converted to squalene through the organopalladium-catalyzed reductive coupling reaction involving the formation of Pd(0)L₂ species. Under mild reaction conditions, impressive β-farnesene conversion (99%) and squalene selectivity (100%) were achieved over the Pd(acac)₂ catalyst at a temperature of 75 °C in an ethanol solvent after 5 h. This advancement may provide insights into broadening squalene production channels and accessing the complex skeletons of natural terpenoids from biorenewable carbon sources, offering practical significance and economic benefits. Full article