Search Results (341)

Bats are crucial reservoirs for coronaviruses, yet surveillance in the southeastern United States remains limited. Using carcasses submitted from public health surveillance for rabies, we screened 170 non-rabid bat carcasses from Alabama using a tiered real-time PCR framework targeting broad Alpha- and Betacoronavirus, alongside specific Sarbecovirus and Merbecovirus lineages. Overall, coronavirus prevalence was 3.5% (6/170), with all positives resolving as Alphacoronavirus. Detections spanned six counties and three bat taxa: Tadarida brasiliensis, Myotis spp., and Eptesicus fuscus, with the latter accounting for most cases (4/6; 66.7%). Sequence and phylogenetic analyses revealed two distinct evolutionary lineages. One isolate, ID-51 (E. fuscus), exhibited relative conservation, sharing 95.3% nucleotide and 93.0% amino acid identity with known references, forming a distinct sibling branch. Conversely, a highly divergent cluster of five isolates (ID-06, -145, -147, -169, -175) displayed remarkably low nucleotide similarities (83.7%–84.3%) to GenBank references despite maintaining high amino acid conservation (98.3%–100%). Topological shifts between nucleotide and amino acid phylogenies demonstrated genetic variation within this novel cluster. These findings underscore a previously uncharacterized genetic diversity of coronaviruses in regional US wildlife, highlighting the necessity of expanded local genomic surveillance. Full article

Wildlife reservoirs sustain rabies transmission despite vaccination of domestic animals, highlighting the need for oral rabies vaccination strategies adapted to contrasting ecological settings. We conducted a pilot multi-region field evaluation of a locally developed briquette-formulated oral rabies vaccine bait at purposively selected sites in four regions of Kazakhstan during 2025–2026. Overall, 9256 baits were deployed, including 4556 placed manually and 4700 distributed by aircraft. Among the manually monitored baits, apparent uptake was 57.2% (2604/4556) and ranged from 11.3% to 75.3% among region-campaign groups. Recovered baits retained their structural integrity following a controlled aerial test drop. Tetracycline fluorescence was detected in seven of ten free-ranging foxes, and six had rabies virus-neutralising antibody titres of ≥0.5 IU/mL. Following controlled oral administration of a single bait, all six initially seronegative captive red foxes and four of five captive raccoons met the predefined seroconversion criterion. These findings support the operational field feasibility of the briquette-formulated bait across contrasting selected landscapes and demonstrate oral immunogenicity under controlled conditions. The observed variation in apparent uptake indicates that bait distribution strategies should be adapted to local wildlife ecology and deployment conditions. Full article

Antimicrobial resistance (AMR) is a major One Health challenge driven by antimicrobial misuse in human medicine, veterinary practice, animal production, and polluted environments. Migratory birds move among wetlands, farms, wastewater-affected habitats, landfills, and coastal ecosystems and may acquire and redistribute antimicrobial-resistant bacteria (ARB) and antimicrobial resistance genes (ARGs) across ecological and political boundaries. This perspective synthesizes evidence on exposure sources, bacterial reservoirs, resistance determinants, cross-species interfaces, and surveillance priorities while explicitly distinguishing four claims: detection or carriage, persistence in individual birds, redistribution along migratory routes, and onward transmission to recipient hosts or environments. Published studies report multidrug-resistant Escherichia coli, Klebsiella pneumoniae, Salmonella spp., Enterococcus spp., and Campylobacter spp., with determinants including blaCTX-M, blaTEM, blaNDM, mcr, tet, sul, and qnr genes. The eight evidence groups summarized here constitute an illustrative, non-comprehensive selection; they are predominantly observational surveys or screenings, and none reconstructs a complete source–bird–destination–recipient transmission chain. Taxon-specific ecology modifies exposure: gulls and storks frequently exploit refuse and wastewater, waterfowl and shorebirds connect aquatic habitats, whereas passerines often reflect more local point-source contamination. Current evidence therefore supports migratory birds primarily as mobile sentinels and opportunistic carriers of anthropogenic AMR, while acknowledging possible natural or ancestral resistance in avian-associated microbiota. Future surveillance should combine longitudinal sampling, baseline cohorts such as pre-migratory nestlings, paired bird–water–soil–sediment sampling, whole-genome sequencing, plasmid profiling, telemetry, environmental DNA, wastewater-based epidemiology, and interoperable veterinary reporting. Practical mitigation requires antimicrobial stewardship, wastewater and landfill control, farm biosecurity, and coordinated veterinary, environmental, and public-health action. Full article

Wild animals play an important role in the epidemiological cycle of Trypanosoma cruzi transmission. The order Chiroptera is ecologically significant as a reservoir host for parasite variants, including TcI, TcII, TcIV, and TcBat. This study aimed to detect T. cruzi in multiple organs of Desmodus rotundus from two regions of San Luis Potosí, Mexico. A total of 63 D. rotundus samples were obtained, of which 22.2% (14/63) tested positive for T. cruzi infection. The highest infection rate was observed in the Media region, with 47.3% (9/19) of samples being infected, whereas in the Huasteca region 11.3% (5/44) of samples were infected. Infection prevalence did not differ significantly by sex or age. Of the five organs tested, only the intestine and the kidney were positive. Phylogenetic and genetic distance analyses revealed sequence identity values >98% with TcI/Tbat trypanosomes. These findings add to the growing body of evidence that bats, particularly hematophagous species such as D. rotundus, play a significant role in maintaining T. cruzi in sylvatic environments and potentially facilitating transmission at the wildlife–domestic interface. Continuous surveillance integrating bat populations, vectors, humans, and domestic animals is essential for understanding and mitigating the risk of Chagas disease in regions where sylvatic and domestic transmission cycles overlap. Full article

In recent years, the wild boar population has increased in Italy. Wild boar is one of the most problematic species from a sanitary point of view because it represents a dangerous reservoir of pathogens and viruses. The aim of this study was to investigate the circulation of coronaviruses in wild boars, a group of viruses known for their ability to spill over between species. As part of the wild boar population control plan established by the Basilicata region relating to this species, 625 animals were analyzed from May 2024 to January 2026. Nasal swabs were collected at the slaughterhouse in the province of Potenza. Screening was conducted using pan-coronavirus PCR through a nested PCR assay targeting the conserved RNA-dependent RNA polymerase (RdRp) region. Out of all samples analyzed, 1.9% were positive for Porcine Hemagglutinating Encephalomyelitis Virus (PHEV), marking the first identification of this neurotropic coronavirus in wild boars in Italy. The detection of PHEV in free-ranging populations highlights the potential for viral circulation at the wildlife–livestock interface and underlines the importance of integrated surveillance systems to prevent possible interspecies transmission and minimize the risk of spillover to domestic pig herds. Full article

Colistin (polymyxin E), a last-resort antibiotic for the treatment of multidrug-resistant Gram-negative bacterial infections, is becoming increasingly compromised by the rapid emergence and dissemination of resistance. The extensive use of colistin in agriculture and veterinary medicine has accelerated the spread of plasmid-mediated mobile colistin resistance (mcr) genes, facilitating transmission across human, animal, and environmental reservoirs. This review provides a comprehensive overview of the epidemiology, molecular mechanisms, and geographical distribution of colistin resistance in the Middle East and North Africa (MENA) region. Analysis of the available literature indicates that Tunisia reports the highest prevalence of colistin-resistant Gram-negative bacteria in North Africa (58.09%), followed by Egypt (24.76%), Algeria (14.29%), and Libya (2.86%). Across the region, mcr-1 is the predominant plasmid-mediated resistance determinant, whereas chromosomal alterations involving the mgrB, pmrA/pmrB, and phoP/phoQ regulatory systems are the principal non-plasmid-mediated mechanisms. Resistance has been documented in major clinical pathogens, including Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa, as well as in livestock, poultry, aquaculture, wildlife, food products, and environmental samples, highlighting the interconnected nature of resistance transmission under a One Health framework. The evidence demonstrates substantial geographical variability and significant gaps in surveillance across several MENA countries, limiting accurate regional burden estimates. Strengthening antimicrobial stewardship, harmonized surveillance programs, molecular monitoring of resistance determinants, and the implementation of One Health strategies are essential to limit the continued emergence and dissemination of colistin resistance throughout the region. Full article

Escherichia coli is a genetically diverse species encompassing both commensal and pathogenic lineages capable of transitioning among various hosts. Within a One Health framework, we conducted a targeted screening of 38 E. coli strains isolated from wildlife, livestock, and food reservoirs to characterize their pathogenic potential by integrating genomic and phenotypic approaches. In vitro functional assays, including biofilm formation, surface motility, and adherence and invasion of HEK-293 epithelial cells, were statistically evaluated using the non-parametric Mann–Whitney U test. Phenotypic analyses revealed that extraintestinal pathogenic (ExPEC) and uropathogenic E. coli (UPEC) strains, particularly those belonging to the high-risk ST117 clone, exhibited significantly enhanced adherence and internalization capacities. These virulent phenotypes strongly correlated with specific genetic signatures involved in iron acquisition and epithelial invasion (chuA, fyuA, vat, and tia), underscoring that the convergence of ExPEC/UPEC determinants drives increased colonization potential. Genomic characterization further revealed that despite high virulence and widespread antimicrobial resistance, the CRISPR/Cas subtype I-E system was highly prevalent (93.8%), displaying structural variations frequently driven by insertion sequences. Spacer analyses identified limited homology to plasmids and phages, suggesting past mobilome interactions rather than active restriction of current horizontal gene transfer. Overall, these findings illustrate how phenotypic traits of high-risk clones match their genomic virulence platforms. The convergence of multidrug resistance and pathogenic fitness across human, animal, and environmental interfaces underscores the need for integrated molecular surveillance in a One Health context. Full article

Since its emergence in 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has infected a wide range of animal species, including wildlife. Although SARS-CoV-2 infection has been widely reported in wildlife, particularly in white-tailed deer (WTD; Odocoileus virginianus) across the United States, data on viral circulation in New England wildlife remain limited. Here, we investigated active SARS-CoV-2 infection and serological evidence of previous exposure in free-ranging wildlife from New England and Virginia. We examined samples from 1646 animals representing 29 wildlife species, collected through wildlife rehabilitation centers, clinics, and hunter harvests in New England and Virginia between 2022 and 2025. SARS-CoV-2 RNA was detected in three WTD from Massachusetts and Vermont. Phylogeographic analysis showed that the Vermont WTD SARS-CoV-2 sequences were closely related to contemporaneous human SARS-CoV-2 sequences from the same region, consistent with a possible human-to-deer spillover event. Serological screening by ELISA detected SARS-CoV-2 reactive samples in nine individuals from three species, including Eastern cottontail (Sylvilagus floridanus), Eastern coyote (Canis latrans), and raccoon (Procyon lotor), providing putative evidence of prior SARS-CoV-2 exposure. However, neutralizing antibodies against the SARS-CoV-2 Omicron variant were detected in only a single Eastern cottontail. Overall, these findings indicate sporadic SARS-CoV-2 detection and limited serological evidence of prior exposure among wildlife sampled in New England and Virginia, and highlight the importance of continued surveillance to detect spillover events, monitor viral evolution, and assess the potential risks associated with wildlife reservoirs. Full article

Background: The American mink (Neogale vison) is an invasive mustelid in Chile that serves as a natural reservoir host for several pathogens. Cardiorespiratory nematodes of the superfamily Metastrongyloidea, including Aelurostrongylus spp., have been reported in carnivores worldwide but remain poorly documented in South American wildlife and invasive species. This study reports the first detection of Aelurostrongylus spp. infection in American minks in Southern Chile. Methods: Between 2024 and 2025, 27 American mink carcasses were collected from the Los Ríos and Los Lagos regions, Southern Chile. Complete necropsies were performed, and cardiorespiratory organs were examined for presence of parasites. Nematode larvae identified in bronchoalveolar lavage were characterized both morphologically and molecularly through PCR amplification, confirming their classification within the superfamily Metastrongyloidea. Results: Metastrongyloid nematodes were detected in 33.3% (9/27) of examined mink. Histopathological examination of lung tissue in some specimens identified adult parasite specimens. Morphological examination revealed Aelurostrongylus spp. first-stage larvae (L1) with characteristic morphology and morphometry. Molecular analysis confirmed the presence of Aelurostrongylus spp., with sequences showing 99% identity to Aelurostrongylus abstrusus. Most of the infected individuals were adults collected from freshwater environments. Conclusions: This study provides the first evidence of patent Aelurostrongylus spp. infection in neozoan American minks in South America, highlighting the role of this invasive species as a potential reservoir for cardiorespiratory parasites and emphasizing the need for continued surveillance of parasitic infections originating from invasive carnivores. Full article

Avian metapneumovirus (aMPV) is an important respiratory pathogen of poultry associated with respiratory disease, reproductive losses, secondary bacterial complications, and economic losses in commercial poultry systems worldwide. This narrative review summarizes current evidence regarding the epidemiology, molecular diversity, transmission ecology, diagnosis, vaccination, and wildlife–poultry interactions of aMPV across Africa and the Middle East. This literature was identified through structured searches of PubMed, Scopus, Web of Science, Google Scholar, and ScienceDirect using predefined keywords related to epidemiology, molecular characterization, surveillance, wild birds, diagnostics, and vaccination. Available evidence demonstrates widespread endemic circulation of aMPV, with subtype B predominating across most investigated poultry systems. However, major heterogeneity exists among studies regarding surveillance intensity, diagnostic methodologies, molecular characterization, and reporting standards. Current evidence suggests possible involvement of wild birds in viral dissemination, although definitive reservoir competence and transmission directionality remain insufficiently established. Important surveillance gaps persist across several African and Middle Eastern countries, emphasizing the need for harmonized surveillance, subtype-matched vaccination strategies, and integrated regional monitoring. Full article

Bats (Chiroptera) account for approximately 25% of all known mammalian species and provide essential ecological services, including insect regulation, pollination, and seed dispersal. Despite their importance, they face significant conservation threats and persistently negative social perceptions. Owing to their innate immunity and tolerance, bats constitute a particularly efficient natural reservoir for a wide variety of potentially zoonotic viruses. Over the past two decades, bat-associated viruses have been central to multiple outbreaks of emerging infectious diseases. From severe acute respiratory syndromes to filoviral hemorrhagic fevers, bats have consistently acted as key reservoirs in pathogen emergence. This has further damaged the public perception of bats as dangerous animals and vectors of serious diseases, in some cases leading to increased persecution of their populations. However, spillover events should not be attributed to bats, but rather to human-driven environmental changes—including deforestation, land-use transformation, agricultural intensification, urban expansion, biodiversity loss, wildlife trade and research biosecurity—that amplify contact among humans, livestock, and wildlife or their potential zoonotic pathogens. Safeguarding bat populations, minimizing direct interactions with wildlife, and preserving intact ecosystems are critical not only for bat conservation but also for reducing zoonotic spillover risk. Furthermore, it is essential to strengthen social communication regarding the importance of bats, in order to counteract their negative reputation and promote greater public understanding of their ecological value. This article reviews health, sociological, and conservation dimensions of the issue, situating them within a broader context to provide an integrated, multidisciplinary understanding. Potential solutions and priority directions for future research are also discussed. Full article

Ticks are haematophagous ectoparasites and vectors of a diverse range of pathogens, exerting substantial impacts on wildlife, domestic animals and public health. In Australia, despite the country’s rich and unique biodiversity, a comprehensive understanding of ticks and tick-borne pathogens associated with wildlife remains limited. Environmental change, urban expansion and climate variability are increasingly disrupting wildlife habitats, potentially intensifying interactions between wildlife hosts, ticks and humans. A broad evidence synthesis of studies published between January 1940 and March 2024 was conducted, retrieving 133 eligible records from Web of Science, CABI Abstracts and PubMed databases. Fifty tick species parasitising 160 wildlife species were identified, predominantly from the genera Ixodes, Amblyomma and Haemaphysalis. The most commonly reported hosts included marsupials, particularly bandicoots, wallabies and possums, with notable tick species being Ixodes tasmani, Ixodes holocyclus and Amblyomma triguttatum. Microorganism records were relatively limited and mostly represented molecular detections or reported associations, including Babesia, Borrelia, Coxiella, Rickettsia and Theileria species, rather than confirmed vector competence, reservoir status or pathogenicity. Key limitations included geographic sampling biases towards eastern Australia, limited molecular identification of ticks and infrequent pathogen screening, particularly regarding the ecology, epidemiology and molecular diversity of host–vector–microorganism interactions. Improved surveillance, expanded molecular characterisation, and integrated One Health investigations are required to better understand the ecological and public health significance of these host–vector–microorganism interactions. Full article

Introduction: Aquatic ecosystems are major reservoirs for both legacy and emerging contaminants, facilitating their distribution throughout the environment and bioaccumulation across different trophic levels. As such, wildlife acts as a valuable tool for biomonitoring these contaminants and serves as a key indicator of environmental pollution within the One Health framework. Despite this, knowledge regarding the application of this framework alongside the assessment of aquatic contaminants using wildlife species remains fragmented. Objective: This study aims to synthesize current evidence on aquatic contaminants using wildlife as sentinels of environmental pollution and to explore how the One Health concept is applied in this field. Methodology: A systematic database search was conducted in SCOPUS, and the retrieved studies were screened according to predefined inclusion and exclusion criteria, as well as their relevance to the One Health concept. Results: Despite its timely relevance, only fourteen studies have adopted the One Health approach to assess contaminants in aquatic species. The selected studies focused mainly on plastic particles (53.33%), such as macro- and microplastics; heavy metals (26.67%), such as mercury (Hg), cadmium (Cd), Nickel (Ni), lead (Pb), and selenium (Se); persistent organic pollutants (13.33%), such as polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), per- and polyfluoroalkyl substances (PFAS), and dioxin/furans; and metalloid (6.67%) arsenic (As). These contaminants were evaluated across four different taxonomic groups: fishes (61.54%), waterbirds (23.08%), mollusks (7.69%) and crustaceans (7.69%). Most studies were conducted in Portugal (37.5%) and the United States of America (18.75%), whereas other countries, including Canada, Australia, Ecuador, Mexico, Indonesia, and Turkey, were mentioned in only one study each (6.25%). Conclusions: Monitoring levels of contaminants in wildlife is essential not only to understand the dynamics of environmental pollution, but also to preserve the integrity of ecosystems while safeguarding animal and human health. However, the limited number of studies adopting a One Health perspective results in an incomplete representation of contaminant classes and affected taxa. These findings highlight the urgent need to expand wildlife-based monitoring strategies within a One Health framework, aiming to improve environmental risk assessment and deepen our understanding of the impacts of pollution across ecosystems, animals and humans. Full article

Antimicrobial resistance is a major global health challenge that requires a One Health approach integrating humans, animals, wildlife, food systems and the environment. Among resistant bacteria, extended-spectrum β-lactamase-producing Escherichia coli (ESBL-producing E. coli) is particularly relevant because it is widely distributed across hosts and ecosystems, may carry mobile resistance genes and is commonly used as an indicator for antimicrobial resistance surveillance. This narrative review examines the occurrence, characteristics and transmission dynamics of ESBL-producing E. coli at the wildlife–livestock interface, with emphasis on its public health relevance and strategies for mitigation and control. The reviewed evidence indicates that livestock, wildlife and environmental matrices can be interconnected reservoirs of resistant E. coli and resistance genes. Transmission should not be interpreted as a simple linear process from livestock to wildlife or humans but rather as a bidirectional and ecological phenomenon shaped by antimicrobial use, farm management, biosecurity, wildlife ecology, environmental contamination and mobile genetic elements. Wildlife may function as a sentinel, reservoir or disperser of resistant bacteria, although detection alone does not demonstrate direct transmission. Integrated surveillance combining livestock, wildlife, food-chain and environmental sampling, supported by genomic analysis, is essential to clarify transmission pathways and guide effective control measures. Full article

In Cambodia, livestock production plays an important role in the national economy and food security, yet tick-borne diseases remain an underrecognized constraint on animal health and productivity. Domestic animals may also serve as reservoirs of zoonotic pathogens in this predominantly rural setting. To address the lack of baseline molecular data on tick-borne pathogens in Cambodia, we conducted a cross-sectional study of ticks collected from November 2022 to April 2023 across 24 provinces. Ticks were collected from various hosts and environments, including cats, cattle, dogs, goats, pangolins, pythons, wild pigs, and bat cave floors, representing urban, rural, farm, wildlife rescue center, and forest fringe habitats. A total of 1526 ticks belonging to nine species were pooled into 352 samples and screened using conventional PCR (cPCR) targeting Anaplasma, Ehrlichia, Babesia, and Coxiella. Additionally, a subset of Rhipicephalus microplus ticks was analyzed using metatranscriptomic next-generation sequencing (NGS). Rhipicephalus microplus ticks collected from cattle tested positive for Anaplasma marginale (1.1% of pools) and Ehrlichia minasensis (0.9% of pools), whereas Rhipicephalus linnaei ticks collected from dogs were positive for Anaplasma platys (0.3% of pools) and Babesia canis (2.0% of pools). A high prevalence of Coxiella-like endosymbionts (15.6% of pools) was found in R. microplus from both cattle and goats. Metatranscriptomic analysis also identified six tick-associated viruses in R. microplus from cattle; with Guangdong tick manly virus being the most dominant (32.5% of samples); followed by Zhangzhou Totiv tick virus 1 (15.0%), Jingmen tick virus (5.0%), and Mogiana tick virus; Rhipicephalus-associated rhabdo-like virus; and Rhipicephalus-associated flavi-like virus; each at 2.5%. These findings provide the first molecular evidence of numerous bacterial, protozoal, and viral pathogens circulating in R. microplus and R. linnaei in Cambodia. The study highlights the need for integrated One Health surveillance to better understand, prevent, and control tick-borne diseases in the region. Full article