Search Results (61)

Weeds pose a significant challenge to agricultural productivity, requiring control strategies that are both effective and environmentally sustainable. Therefore, this study evaluated the inhibitory potential of aqueous extracts from Ricinus communis L. leaves to manage the weeds Oryza sativa L. (weedy rice) and Cyperus ferax. Extracts were obtained through pressurized liquid extraction using water as the solvent. Bioassays were conducted during pre- and post-emergence stages by foliar spraying 15 and 30 days after sowing (DAS). The effect of extraction time (1–30 min) on inhibitory efficacy was also assessed. Chemical profiles of the extracts were characterized using high-performance liquid chromatography. The extracts significantly inhibited seed germination, with suppression rates reaching 92.7%. Plant growth was also diminished, particularly with earlier treatments (at 15 DAS), resulting in reductions of up to 32% and 53% in shoot length, and 69% and 73% in total dry mass for O. sativa L. and C. ferax, respectively. Mortality rates of O. sativa L. and C. ferax reached 64% and 58%, respectively. Phenolic compounds were identified in the extracts, and higher concentrations were observed at shorter extraction times. These findings underscore the potential of R. communis L. leaf extracts as an ecologically sustainable alternative for weed management, providing an effective and natural approach that may reduce reliance on synthetic herbicides and mitigate their environmental impact. Full article

The continued emergence of weedy rice (Oryza sativa L.) in Taiwan poses serious challenges to seed purity and commercial rice cultivation, particularly under transplanting systems. These off-type individuals, often marked by a red pericarp, reduce varietal integrity and complicate seed propagation. This study evaluated the morphological variation among 117 Taiwan weedy rice (TWR) accessions and 55 control cultivars, which include 24 temperate japonica cultivars (TEJ), 24 indica cultivars, and seven U.S. weedy rice (UWR) types. Principal component analysis (PCA) showed that TWR shares vegetative traits with modern cultivars but exhibits grain morphology resembling indica landraces—indicating weak artificial selection pressure on grain traits during nursery propagation. TWR was also found to possess a suite of adaptive weedy traits, including semi-dwarfism, delayed heading, high shattering, and superior seed storability, facilitating its persistence in field conditions. These findings provide critical insights for integrated weed management and cultivar purity strategies, emphasizing the importance of certified seed use, stringent field hygiene, and disruption of weedy rice reproductive cycles. Full article

Weedy rice, also known as red rice, mainly originates from the de-domestication of cultivated rice and is a vicious weed in paddy fields around the world. Its red seeds are rich in oxidized proanthocyanidins (OPAs). This study investigates whether OPA content varies among different weedy rice strains, whether these variations are possibly related to their adaptation to the local environment, and whether the change in OPA content could affect seed germination. A total of 202 weedy rice accessions from 69 populations across China were collected. Their OPA content, Rc/Rd genotypes, and seed germination percentage on the second, third, and seventh day were detected, respectively. Using bivariate Pearson’s two-tailed correlation analysis and generalized linear mixed models, our results showed that the content of OPAs varied widely among the different strains of weedy rice and were significantly correlated with local environment (latitude) and Rc/Rd genotypes but not with seed germination percentage on the second, third, and seventh day. Thus, the content of OPAs in Chinese weedy rice seeds is closely related to its ecological adaptability. These findings provide insights into the effect of OPA content on the ecological adaptability of weedy rice, which is beneficial to the control and germplasm resource utilization of weedy rice. Full article

Mutagenesis breeding, combined with the application of corresponding herbicides to develop herbicide-resistant rice germplasm, provides great promise for the management of weeds and weedy rice. In this study, a topramezone-resistant rice mutant, TZR1, was developed from the indica rice line Chuangyu 9H (CY9H) through radiation mutagenesis and topramezone selection. Dose–response curves revealed that the resistance index of TZR1 to topramezone was 1.94-fold compared to that of CY9H. The resistance mechanism of TZR1 was not due to target-site resistance. This resistance could be reversed by a specific inhibitor of glutathione S-transferase (GST). The activity of antioxidant enzymes was analyzed. SNPs and Indels were detected using whole-genome resequencing; differentially expressed genes were identified through RNA sequencing. Then, they underwent Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses. Key candidate genes associated with topramezone resistance were validated via a real-time quantitative PCR assay. Five GST genes, two UDP-glycosyltransferase genes, and three ATP-binding cassette transporter genes were identified as potential contributors to topramezone detoxification in TZR1. Overall, these findings suggest that GST enzymes possibly play an important role in TZR1 resistance to topramezone. This study will provide valuable information for the scientific application of 4-hydroxyphenylpyruvate dioxygenase inhibitors in paddy fields in future. Full article

The number of effective rice tillers determines the number of effective panicles and then affects the final yield. Rice tillering ability shows great differences among cultivars and under different environmental conditions, but the underlying mechanisms are not clear. The present paper investigated the formation of rice tillers and examined its genetic regulation, the effects of plant hormones, several environmental factors affecting rice tillering, and nitrogen’s regulation of tillers. Finally, the utilization of the tillering ability of weedy and wild rice was investigated. We concluded that many genes are involved in manipulating rice tillering, including MOC1, MOC3, FON1, LAX1, LAX2, APC/C^TE, D3, D10, D14, D17, D27, and D53, by altering associated hormone contents or coding signal substances. The plant hormones auxin (IAA), gibberellin (GA), and strigolactone (SL) inhibit rice tillering, while cytokinin (CTK) promotes rice tillering. Weak light (light intensity is lower than 200 μmol m⁻² s⁻¹) and low and high temperatures (below 15 °C and above 38 °C) inhibit rice tillering, while optimized water management, such as alternate wetting and moderate drying irrigation, can greatly promote rice tillering. In addition, increasing plant nitrogen concentration can effectively improve rice tillers by adjusting multiple nitrogen metabolism enzymes. Weedy rice and some wild rice showed obvious superiority in tillering ability with respect to cultivated rice, but the underlying mechanisms are not clear and should be further explored. This study can provide theoretical guidance for the breeding and cultivation of high-yield and high-efficiency rice cultivars. Full article

Lignin is a key metabolite for terrestrial plants. Two types of aromatic amino acids, phenylalanine (Phe) and tyrosine (Tyr), serve as the precursors for lignin biosynthesis. In most plant species, Phe is deaminated by Phe ammonia-lyase (PAL) to initiate lignin biosynthesis, but in grass species, Phe and Tyr are deaminated by Phe/Tyr ammonia-lyase (PTAL). To understand the efficiency of PAL and PTAL, we used transgenic and non-transgenic Arabidopsis with PAL and crop-weedy rice hybrids (CWRH) with PTAL to analyze lignin-biosynthesis-associated metabolites. The transgenic plants overexpressed the exogenous 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene, whereas the non-transgenic plants normally expressed the endogenous EPSPS gene. Our results show significantly increased Phe/Tyr contents in transgenic Arabidopsis and CWRH plants, leading to substantially increased lignin and biomass. In addition, the PTAL pathway promotes a much greater proportion of increased lignin and biomass in transgenic CWRH than in transgenic Arabidopsis lineages. Evidently, more efficient lignin biosynthesis characterized the grass species possessing the PTAL pathway. These findings are important for a better understanding of the PAL and PTAL’s functions in the phenylpropanoid metabolic pathways in the evolution of plant species. These findings also have great value for implications such as effective carbon fixation by enhancing lignin biosynthesis through genetic engineering of their key genes in appropriately selected plant species. Full article

Rice is a staple crop in sub-Saharan Africa, and it is mostly produced by Asian cultivars of Oryza sativa that were introduced to the continent around the fifteenth or sixteenth century. O. glaberrima, the native African rice, has also been planted due to its valuable traits of insect and drought tolerance. Due to competition and resistance evolution, weedy rice has evolved from O. sativa and O. glaberrima, posing an increasing threat to rice production. This paper provides an overview of current knowledge on the introduction and domestication history of cultivated rice in Africa, as well as the genetic properties of African weedy rice that invades paddy fields. Recent developments in genome sequencing have made it possible to uncover findings about O. glaberrima’s population structure, stress resilience genes, and domestication bottleneck. Future rice genomic research in Africa should prioritize producing more high-quality reference genomes, quantifying the impact of crop–wild hybridization, elucidating weed adaptation mechanisms through resequencing, and establishing a connection between genomic variation and stress tolerance phenotypes to accelerate breeding efforts. Full article

Weedy rice is a notorious weed in the rice agroecosystem. Its infestation has caused significant economic loss in many rice-production countries, including Malaysia. In Malaysia, weedy rice consists of a genetic admixture of cultivated and wild traits, resulting in a highly competitive ability against cultivated rice for resources. The morphology and genetic plasticity of weedy rice provide several adaptive advantages, enabling it to thrive in rice agroecosystems and become a serious weed infesting Malaysian rice granaries. Previous strategies in combating weedy rice have often been less effective since weedy rice is easily adapted to a wide range of environments. In this review, we address the weedy rice issue in Malaysia and the progress of weedy rice studies. A future direction on weedy rice research via omics study is also discussed to propose solutions for improvement in weed control, good agronomic practices, and food security. Full article

The Clearfield^® technology is an useful tool for controlling weedy rice due to the effectiveness of imazamox and the cultivation of rice varieties resistant to imidazolines. However, residual imazamox in the soil probably causes phytotoxicity to subsequent non-resistant rice crops. We previously found that pyrroloquinoline quinone (PQQ), a bioactive elicitor, can enhance rice tolerance to imazamox. In this study, we explored the molecular mechanism of PQQ-mediated rice tolerance to imazamox by RNA-seq analysis, real-time quantitative PCR (RT-qPCR) assay, and enzyme activity assay. The results indicated that compared to imazamox at 66.7 mg a.i./L (IMA) alone, rice plants treated with imazamox at 66.7 mg a.i./L and PQQ at 0.66 mg a.i./L (IMA + PQQ) exhibited significantly reduced sensitivity to imazamox. Seven days post-treatment, IMA + PQQ-treated rice plants showed partial chlorosis and leaf curling, but IMA-treated rice plants had severe wilting and died. The fresh weight inhibition rate was 29.3% in the IMA + PQQ group, significantly lower than that of 56.6% in the IMA group alone. RNA-seq analysis showed differentially expressed genes were mainly involved in phenylpropanoid biosynthesis, diterpenoid biosynthesis, and MAPK signaling pathways in response to IMA + PQQ treatment. Both RNA-seq analysis and RT-qPCR assay showed that the expression of OsCATB gene in the catalase (CAT) gene family was upregulated at 12 h, the expression of OsGSTU1 gene was upregulated at 12, 24, and 48 h, while the expressions of OsABCB2, OsABCB11, and OsABCG11 genes were upregulated at 24 and 48 h. Enzyme activity assays revealed that the activity of superoxide dismutase in the IMA + PQQ group was increased by 47.45~120.31% during 12~72 h, compared to that in the IMA group. CAT activity in the IMA + PQQ group was increased by 123.72 and 59.04% at 12 and 48 h, respectively. Moreover, malondialdehyde levels indicative of oxidative damage were consistently lower in IMA + PQQ-treated plants, with a reduction of 46.29, 11.37, and 14.50% at 12, 36, and 72 h, respectively. Overall, these findings discover that PQQ has potential in reducing imazamox phytotoxicity in rice by enhancing antioxidant enzyme activities and regulating oxidative stress responses. They will provide valuable strategies for improving imazamox tolerance in crops. Full article

Lindernia dubia (L.) Pennell is a species with invasive behavior outside of its native range of distribution (America), linked mainly to aquatic habitats. This annual species has been acknowledged as a weed in rice paddies in Europe and Asia. Due to the impacts of this invasive plant, some authors have even listed this species as a global invader. The present work focused on spontaneous plant species occurring in seedlings of Typha domingensis Pers. grown in central Spain for the establishment of constructed wetlands. Weed inventory revealed the presence of L. dubia as a dominant spontaneous species in this crop environment. A suite of mesocosm experiments were designed to study the population density of L. dubia versus that of the other dominant plant species, and to determine traits associated with its weedy potential. The results showed that L. dubia presents competitive attributes such as morphological variability, early flowering, long seeding time, short growth cycle, small and light seeds and a high seed production and germination rate (25 °C), meaning a high reproductive capacity in a cycle of about three months for plant growth in non-limiting conditions. The data obtained from this work provide a basis for understanding the weedy potential of L. dubia, and for management decisions of a potentially invasive species, which has been little investigated in Europe Full article

Weedy rice (Oryza sativa f. spontanea) is a noxious weed infesting rice fields worldwide and causes great yield losses for cultivated rice. Effective management of this weed is essential for the world’s rice production. Yet, the management of weedy rice is challenging. One of the reasons is that shattered weedy rice seeds stored in soil often trigger great weed proliferation in the succeeding crop seasons. To study the survival of weedy rice seeds in soil seedbanks, we conducted 90-day soil burial experiments at different soil depths from 0–25 cm, using weedy rice seeds from Jiangsu Province in China. Results from two independent experiments under the rice field and laboratory conditions indicated significant differences in seed death ratios (SDRs) and induced seed dormancy ratios (ISDRs) of weedy rice at different soil burial depths. Weedy rice seeds exposed to the soil surface (0 cm burial treatment) had the highest SDRs and lowest ISDRs. An evident pattern of quickly declining SDRs with increased soil burial depths was identified from this study, suggesting rapid losses of seed viability on the surface and in shallow layers of soil. Our findings provide a useful guide for designing strategies to effectively control weedy rice by maintaining shattered seeds on the surface or in shallow layers of soil. The practices can easily be achieved through adopting the no-till farming system, which can substantially minimize viable weedy rice seeds as an important component in comprehensive weed management strategies. Full article

Weedy rice is the most challenging weed species to remove in rice production. We found a novel phenotype of seedling leaves which rapidly generates necrotic spots in response to imidazolinone herbicides in weedy rice, but its influencing factors and formation basis are still unknown. In this study, we used the leaf necrotic spot-producing type of weedy rice as the material. First, leaf necrotic spots were defined as physiological and vacuole-mediated cell necrosis by microscopic examination. The imazethapyr concentration was positively correlated with the degree of necrotic spots occurring, while the action site was in accordance with necrosis using herbicide stability tests combined with fluorescence parameters. Furthermore, transcriptome analysis revealed significant differences in the gene expression of endoplasmic reticulum stress and the lipid metabolism membrane structure damage pathway during necrosis, as confirmed by transmission electron microscopy. The light–temperature test also showed that high temperature and intense light could promote the appearance of necrotic spots. These experimental results are helpful in clarifying the process and basis of imazethapyr in inducing the rapid generation of necrotic spots in rice leaves and providing new insight into understanding the mechanism of response to imidazolinone herbicides and the control of weedy rice. Full article

Burning of agricultural residues, cultivation of single crop varieties such as rice (Oryza sativa L.) and wheat (Triticum aestivum L.), and traditional soil tillage practices collectively contribute to the degradation of environmental quality, water systems, and soil resources. To address these issues, conservation agriculture (CA)-based crop management practice has emerged as one of the viable options. The current study was conducted with the aim to evaluate the effect of CA and weed management (WM) practices on carbon dynamics and biochemical properties of soil. The experiment included two factors, viz., CA and WM practices. The CA levels vary from conventional agriculture to partial CA (pCA1, pCA2, and pCA3) and full CA, while WM had three levels consisting of chemical control, integrated weed management, and weedy check. The results demonstrated that soil organic carbon (SOC) under the full CA treatment, was 30.6, 23.5, and 20.6 percent higher than conventional agriculture (T1), partial CA1, and partial CA2 practices, respectively. Similarly, labile fractions of carbon, KMnO₄-C MBC, WSOC, and POC, in full CA increased by 46.3, 52.3, 152.4, and 15.6 percent, respectively, over conventional agriculture. Nonetheless, the total organic carbon exhibited no significant impact. The highest SOC stock was sequestered under full CA treatment, which was higher by 26.5 to 40.6 per cent than the rest of the CA treatments. Among biological properties, full CA resulted in 104.3 and 40.6 percent higher dehydrogenase and alkaline phosphatase activity than conventional agriculture. The impact of weed management practices was significant for KMnO₄-C, with very labile carbon and alkaline phosphatase activity only in the surface soil layer. Soil quality index (SQI) followed the decreasing order as full CA (0.94) > partial CA3 (0.88) > partial CA2 (0.78) partial CA1 (0.77) > conventional agriculture (0.67) under different CA treatments, whereas WM followed herbicide (0.82) > weedy check (0.81) > IWM (0.80). The current study offered incredible information on soil carbon and biological indicators to monitor soil quality changes in rice–wheat cropping systems in response to conservation agriculture practices. Full article

Weeds that infest crops are a primary factor limiting agricultural productivity worldwide. Weedy rice, also called red rice, has experienced independent evolutionary events through gene flow from wild rice relatives and de-domestication from cultivated rice. Each evolutionary event supplied/equipped weedy rice with competitive abilities that allowed it to thrive with cultivated rice and severely reduce yields in rice fields. Understanding how competitiveness evolves is important not only for noxious agricultural weed management but also for the transfer of weedy rice traits to cultivated rice. Molecular studies of weedy rice using simple sequence repeat (SSR), restriction fragment length polymorphism (RFLP), and whole-genome sequence have shown great genetic variations in weedy rice populations globally. These variations are evident both at the whole-genome and at the single-allele level, including Sh4 (shattering), Hd1 (heading and flowering), and Rc (pericarp pigmentation). The goal of this review is to describe the genetic diversity of current weedy rice germplasm and the significance of weedy rice germplasm as a novel source of disease resistance. Understanding these variations, especially at an allelic level, is also crucial as individual loci that control important traits can be of great target to rice breeders. Full article

Weedy rice (Oryza spp.) is a notorious weed that invades paddy fields and hampers the rice’s production and yield quality; thus, it has become a major problem for rice farmers worldwide. Weedy rice comprises a diverse morphology and phenotypic variation; however, the metabolome and chemical phenotypes of weedy rice grains have not been explored. Therefore, this study is aimed to investigate the metabolite profiles and chemical diversity of Malaysian weedy rice. Thirty-one biotypes of weedy rice grains were collected from selected rice granaries in different states of Peninsular Malaysia, including Selangor, Perak, Penang, Kedah, Perlis, Kelantan, and Terengganu. In addition to the weedy rice samples, four cultivated rice varieties (MR219, MR220, MR220 CL2, and MARDI Siraj 297) were subjected to nuclear magnetic resonance-based metabolomics. The PLS-DA and OPLS-DA models revealed a clear separation between the weedy rice and cultivated rice, which was contributed by the higher level of γ-aminobutyric acid (GABA), α-glucose, fumaric acid, and phenylalanine in the weedy rice, whilst valine, leucine, isoleucine, fatty acids, 2,3-butanediol, threonine, alanine, butyric acid, choline, γ-oryzanol, fructose, β-glucose, sucrose, ferulic acid, and formic acid were found dominant in the cultivated rice. Interestingly, the models also showed a separation between the weedy rice samples collected from the west coast and east coast regions of Peninsular Malaysia. The metabolites responsible for the separation, i.e., threonine, alanine, butyric acid, fructose, β-glucose, and formic acid, were found higher in the west coast samples, and the east coast samples were discriminated by higher levels of valine, leucine, isoleucine, fatty acids, 2,3-butanediol, choline, GABA, γ-oryzanol, α-glucose, sucrose, fumaric acid, ferulic acid, and phenylalanine. This study is the first to provide insights into the metabolite profiles and chemical phenotypes of Malaysian weedy rice that could be influenced by genotype and environmental conditions. The information on the weedy rice metabolome and omics data is important for further research on weed management and crop improvement. Full article