Search Results (579)

Drought is a leading constraint on plant productivity and will intensify with climate change. Plant acclimation emerges from a multilayered regulatory system that integrates signaling, transcriptional reprogramming, RNA-based control, and chromatin dynamics. Within this hierarchy, non-coding RNAs (ncRNAs) provide a unifying regulatory layer; microRNAs (miRNAs) modulate abscisic acid and auxin circuits, oxidative stress defenses, and root architecture. This balances growth with survival under water-deficient conditions. Small interfering RNAs (siRNAs) include 24-nucleotide heterochromatic populations that operate through RNA-directed DNA methylation, which positions ncRNA control at the transcription–chromatin interface. Long non-coding RNAs (lncRNAs) act in cis and trans, interact with small RNA pathways, and can serve as chromatin-associated scaffolds. Circular RNAs (circRNAs) are increasingly being detected as responsive to drought. Functional studies in Arabidopsis and maize (e.g., ath-circ032768 and circMED16) underscore their regulatory potential. This review consolidates ncRNA biogenesis and function, catalogs drought-responsive modules across model and crop species, especially cereals, and outlines methodological priorities, such as long-read support for isoforms and back-splice junctions, stringent validation, and integrative multiomics. The evidence suggests that ncRNAs are tractable entry points for enhancing drought resilience while managing growth–stress trade-offs. Full article

Galectins, a family of glycan-binding proteins, play crucial roles in various cellular functions, acting at both intracellular and extracellular levels. Among them, Galectin-3 (Gal-3) stands out as a unique member, possessing an intrinsically unstructured N-terminal oligomerization domain and a canonical carbohydrate-recognition domain (CRD). Gal-3 binding to glycosylated plasma membrane cargo leads to its oligomerization and membrane bending, ultimately resulting in the formation of endocytic invaginations. An interactomic assay using proteomic analysis of endogenous Gal-3 immunoprecipitates identified the orphan G protein-coupled receptor GPRC5A as a novel binding partner of Gal-3. GPRC5A, also known as Retinoic Acid-Induced protein 3 (RAI3), is transcriptionally induced by retinoic acid. Our results further demonstrate that extracellular recombinant Gal-3 stimulates GPRC5A internalization. In SW480 colorectal cancer cells, glycosylated GPRC5A interacts with Gal-3. Interestingly, while GPRC5A expression was upregulated by the addition of all-trans retinoic acid (ATRA), its endogenous internalization in SW480 cells was specifically triggered by extracellular Gal-3, but not by ATRA. This study provides new insights into the endocytic mechanisms of GPRC5A, for which no specific ligand has been identified to date. Further research may uncover additional Gal-3-mediated functions in GPRC5A cellular signaling and contribute to the development of innovative therapeutic strategies. Full article

Background: Liver regeneration is a complex process involving multiple signaling pathways that coordinate hepatocyte proliferation, survival, and tissue repair. Natural compounds like silymarin, ursolic acid, quercetin, and resveratrol have shown regenerative potential, though their precise molecular mechanisms remain unclear. 6-O-trans-feruloyl catalpol (6FC), a major bioactive compound from Catalpa ovata, exhibits anti-inflammatory and potential antioxidant effects via regulation of NF-κB signaling and redox-sensitive pathways such as Akt and MAPK, which are critical for cell survival and proliferation. Moreover, 6FC exhibits peroxynitrite-scavenging activity, suggesting its potential antioxidant properties that may protect hepatocytes from oxidative damage during regeneration. However, the role of 6FC in liver regeneration has not been elucidated, positioning it as a promising natural therapeutic candidate for hepatic repair. Purpose: This study aimed to determine whether 6FC promotes hepatocyte proliferation and liver regeneration in vivo using a 2/3 PHx mouse model, and to validate its proliferative effects in vitro with HGF-stimulated Hep3B cells. Methods: A 2/3 PHx liver regeneration model was used to evaluate 6FC-mediated liver regeneration. Histological and molecular analyses assessed hepatocyte proliferation and signaling activation. HGF-stimulated Hep3B cells were also used to examine 6FC proliferative effects in vitro. Results: 6FC significantly promoted liver regeneration by restoring the liver-to-body weight ratio and reducing serum ALT and AST levels without inducing excessive immune responses. Mechanistic studies revealed that 6FC activates Akt and MAPK pathways, increases the expression of critical growth factors, and upregulates cell cycle regulators. These effects were also observed in HGF-stimulated Hep3B cells, suggesting that 6FC may enhance hepatocyte proliferation without triggering excessive immune responses. Conclusions: 6FC accelerates hepatocyte proliferation and promotes liver regeneration by activating key redox-sensitive signaling pathways, highlighting its potential as a natural antioxidant-based therapeutic agent. Full article

This study systematically analyzed the multidimensional effects of Lactobacillus fermentation on Pueraria lobata (PL) and investigated the potential mechanisms underlying its hypolipidemic activity. Results indicated that fermentation significantly increased the total acid content from 1.02 to 3.48 g·L⁻¹, representing a 2.41-fold increase. Although slight reductions were observed in total flavonoids (8.67%) and total phenolics (6.72%), the majority of bioactive components were well preserved. Other antioxidant capacities were retained at >74.71% of baseline, except hydroxyl radical scavenging. Flavor profiling showed increased sourness and astringency, accompanied by reduced bitterness, with volatile compounds such as β-pinene and trans-2-hexenyl butyrate contributing to a distinct aromatic profile. Untargeted metabolomics analysis revealed that fermentation specifically enhanced the abundance of low-concentration isoflavone aglycones, including daidzein and genistein, suggesting a compositional shift that may improve hypolipidemic efficacy. Integrated network pharmacology and computational modeling predicted that eight key components, including genistein, could stably bind to ten core targets (e.g., AKT1 and MMP9) primarily through hydrogen bonding and hydrophobic interactions, potentially regulating lipid metabolism via the PI3K-AKT, PPAR, and estrogen signaling pathways. This study reveals the role of Lactobacillus fermentation in promoting the conversion of isoflavone glycosides to aglycones in PL and constructs a multi-dimensional “components-targets-pathways-disease” network, providing both experimental evidence and a theoretical foundation for further research on the lipid-lowering mechanisms of fermented PL and the development of related functional products. Full article

In this study, I expand on the Black feminist tradition of rethinking Black women’s activism by examining how Black queer women’s fashion shows challenge traditional definitions and sites of activism. I present BlaQueer Style as an interpretive framework that largely draws on the wisdom and theories of Black feminism to undercover how these productions and the politics that shape them are not only sites of activism because they challenge the conventions of mainstream cultural institutions, but because they make space for the social and personal transformation of the communities they center. In this analysis of two public LGBTQ+ fashion shows, I argue that intention aside, the Black queer women founders and fashion workers and their practices and performances of centering marginalized communities, using the body to signal and subvert controlling images, and building coalition among these communities, highlight the liberatory potential of their fashion work. In a time when Black queer and trans people are experiencing misrepresentation and other forms of violence globally, BlaQueer Style is what I name the politics that presents a deep commitment to both the aesthetics and the liberation of these communities in Black queer women’s fashion work. Full article

Sedum alfredii is a cadmium (Cd) hyperaccumulator, but the regulatory mechanisms linking phytohormones and redox balance to Cd transporter expression remain unclear. In this study, we omitted external cadmium (Cd) stress to isolate and examine the interplay between phytohormone and reactive oxygen species (ROS) signaling. Exogenous treatments with abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellic acid (GA₃), trans-zeatin (t-Z), and H₂O₂ were combined with analyses of hormone levels, antioxidant enzyme activities, and transporter gene expression. Correlation and PLS-SEM analyses identified the CAT–H₂O₂ module as a key node: ABA and IAA enhanced CAT activity and alleviated ROS-mediated repression of transporters, while GA₃ and t-Z exerted opposite effects. Functional validation using an H₂O₂ scavenger revealed that the regulation of HMA3 and Nramp5 by ABA and t-Z is H₂O₂-dependent. In contrast, IAA modulates Nramp5 through a ROS-independent pathway, while the regulatory effects of GA₃ were negligible. Functional validation under Cd exposure suggests a model wherein HMA3 and Nramp5 act in a complementary manner to sequester and redistribute Cd in leaves, thereby supporting hyperaccumulation. These findings highlight hormone-specific ROS pathways as central to transporter regulation and provide mechanistic insights to improve phytoremediation efficiency. Full article

Electroencephalography signal generation remains a challenging task due to its non-stationarity, multi-scale oscillations, and strong spatiotemporal coupling. Conventional generative models, including VAEs and GAN variants such as DCGAN, WGAN, and WGAN-GP, often yield blurred waveforms, unstable spectral distributions, or lack semantic controllability, limiting their effectiveness in emotion-related applications. To address these challenges, this research proposes a Transformer-based conditional variational autoencoder–generative adversarial network (Trans-cVAE-GAN) that combines Transformer-driven temporal modeling, label-conditioned latent inference, and adversarial learning. A multi-dimensional structural loss further constrains generation by preserving temporal correlation, frequency-domain consistency, and statistical distribution. Experiments on three SEED-family datasets—SEED, SEED-FRA, and SEED-GER—demonstrate high similarity to real EEG, with representative mean ± SD correlations of Pearson ≈ 0.84 ± 0.08/0.74 ± 0.12/0.84 ± 0.07 and Spearman ≈ 0.82 ± 0.07/0.72 ± 0.12/0.83 ± 0.08, together with low spectral divergence (KL ≈ 0.39 ± 0.15/0.41 ± 0.20/0.37 ± 0.18). Comparative analyses show consistent gains over classical GAN baselines, while ablations verify the indispensable roles of the Transformer encoder, label conditioning, and cVAE module. In downstream emotion recognition, augmentation with generated EEG raises accuracy from 86.9% to 91.8% on SEED (with analogous gains on SEED-FRA and SEED-GER), underscoring enhanced generalization and robustness. These results confirm that the proposed approach simultaneously ensures fidelity, stability, and controllability across cohorts, offering a scalable solution for affective computing and brain–computer interface applications. Full article

Type 1 diabetes mellitus (T1DM) is an autoimmune disease characterized by immune-mediated β-cell destruction, where interleukin-6 (IL-6) signaling plays a complex and context-dependent role. Tocilizumab, an IL-6 receptor (IL-6R) inhibitor, is effective in several autoimmune conditions, but its influence on the onset and progression of T1DM remains uncertain. This scoping review aimed to map current clinical, genetic, and mechanistic evidence linking IL-6/IL-6R signaling to T1DM risk and to identify key research gaps. Following PRISMA-ScR guidelines, PubMed, Embase, and Web of Science were searched for studies from 2005 to 2025 reporting associations between tocilizumab or IL-6R modulation and T1DM onset. Six studies were included: one case report describing T1DM onset during tocilizumab therapy in a genetically predisposed patient, one randomized controlled trial showing no significant β-cell preservation with tocilizumab, three Mendelian randomization analyses with conflicting findings on IL-6R signaling, and one mechanistic study showing enhanced IL-6 responsiveness in early-stage T1DM. Collectively, evidence remains fragmented and inconclusive, highlighting research gaps in the differential roles of IL-6 classic versus trans-signaling and the impact of genetic predisposition. Future prospective studies should clarify whether selective IL-6 trans-signaling blockade may offer safer, targeted strategies for modulating autoimmune β-cell destruction. Full article

The use of JAK inhibitors (JAKi) represents a promising therapeutic approach for patients with lymphoid leukemias (Lym-L). Clinical trials are ongoing to evaluate the safety and efficacy of JAK inhibitors. Over the last years, there have been reports of preclinical Lym-L models that developed JAKi resistance, and reports of patients treated with JAKi who experienced treatment failure. Although evidence shows that there are diverse JAKi mechanisms, no review studies have been performed that summarize and discuss this information. This scoping review aimed to provide an updated overview of the mechanisms underlying JAKi molecular resistance in Lym-L. According to a scoping review PRISMA guidelines, a search was conducted in the PubMed and Europe PMC databases for studies published from 2010 to 2024. We included articles that described the molecular resistance to JAKi in Lym-L preclinical models or patients. The search was complemented by a review of laboratory-engineered resistant mutations in genomic datasets to obtain more information about their presence in patients with Lym-L. Twenty-two articles were eligible for this review, and six different mechanisms of molecular resistance were identified: (1) point mutations in the kinase domain, (2) cooperation between double-JAK mutants, (3) inactivation of phosphatases, (4) evasion of JAK inhibition due to trans-phosphorylation of JAK family proteins, (5) upregulation of pro-survival proteins, and (6) activation of kinase cross-signaling pathways. The integrated evidence enabled the identification of specific mechanisms of molecular resistance to JAKi in Lym-L, as well as promising therapeutic approaches to prevent them. These include selecting a sensitive JAKi, choosing an effective dosage regimen, and combining inhibitory molecules. Full article

Reactive sulfur species (RSS)—hydrogen sulfide (H₂S), low-molecular-weight persulfides/polysulfides and protein persulfidation—constitute a third redox axis alongside ROS and RNS. Nanomolar H₂S, produced by trans-sulfuration (CBS/CSE) and 3-MST, is oxidized by sulfide–quinone reductase to persulfides that fuel the respiratory chain while curbing superoxide. Reversible persulfidation reprograms cysteine sensors in metabolism (GAPDH), inflammation (NLRP3, p47^phox) and transcription (Keap1/NRF2), linking RSS to energy balance, vasodilation, innate immunity and neuroplasticity. Disrupted sulfur signaling—deficit or overload—contributes to heart failure, sarcopenia, neurodegeneration, cancer and post-COVID syndromes. Therapeutically, slow-release donors (SG1002, GYY4137), mitochondria-targeted vectors (AP39), photo- or thiol-activated “smart” scaffolds, diet-derived polysulfides/isothiocyanates and microbiota engineering aim to restore the protective RSS window. Key challenges are a narrow therapeutic margin and real-time quantification of persulfide fluxes. Harnessing RSS therefore offers a route to rebalance redox homeostasis across diverse chronic diseases. Full article

Verticillium wilt, caused by Verticillium dahliae, severely threatens various crops and trees worldwide. This study aimed to characterize the function of a CUE (coupling of ubiquitin conjugation to endoplasmic reticulum (ER) degradation)-domain-containing protein, VdCUE, in V. dahliae, which exhibits sequence divergence between the defoliating strain XJ592 and the non-defoliating strain XJ511. We generated ∆VdCUE-knockout mutants and evaluated their phenotypes in growth and virulence. Functional analyses included verifying the signal peptide activity of VdCUE, testing its ability to induce cell death or inhibit BAX-induced cell death in Nicotiana benthamiana leaves, and identifying host targets via yeast two-hybrid screening. The ∆VdCUE mutants showed reduced formation of melanized microsclerotia but no other obvious growth defects. Cotton plants infected with the ∆VdCUE mutants exhibited a significantly lower disease index and defoliation rate. VdCUE was confirmed to be secreted via a functional signal peptide, but it neither triggered cell death nor inhibited BAX-induced cell death. Three putative host targets were identified and supported by AI-based three-dimensional structural modeling, including tRNA-specific 2-thiouridylase, peptidyl-prolyl cis-trans isomerase, and 40S ribosomal protein, which may mediate VdCUE-dependent virulence regulation. These findings reveal VdCUE as a key virulence factor in V. dahliae, contributing to our understanding of its pathogenic mechanism. Full article

Long noncoding RNAs (lncRNAs) have emerged as key regulators of gene expression during seed development and physiology. This review examines the diverse roles of lncRNAs in key stages of seed development, including embryogenesis, maturation, dormancy, germination, and aging. It integrates the current understanding of the biogenesis and classification of lncRNAs, emphasizing their functional mechanisms in seeds, particularly those acting in cis and trans. These mechanisms include the scaffolding of polycomb and SWI/SNF chromatin remodeling complexes, the guidance of RNA-directed DNA methylation, the ability to function as molecular decoys, and the modulation of small RNA pathways via competitive endogenous RNA activity. This review highlights the regulatory influence of lncRNAs on abscisic acid (ABA) and gibberellin (GA) signaling pathways, as well as light-responsive circuits that control dormancy and embryonic root formation. Endosperm imprinting processes that link parental origin to seed size and storage are also discussed. Emerging evidence for epitranscriptomic modifications, such as m6A methylation, and the formation of LncRNA–RNA-binding protein condensates that maintain resting states and coordinate reserve biosynthesis are also reviewed. Advances in methodologies, including single-cell and spatial transcriptomics, nascent transcription, direct RNA sequencing, and RNA–chromatin interaction mapping, are expanding the comprehensive lncRNA landscape during seed development and germination. These advances facilitate functional annotation. Finally, possible translational research applications are explored, with a focus on developing lncRNA-based biomarkers for seed vigor and longevity. Full article

This paper presents the design and implementation of a wideband diode-based down-converter operating from 60 to 90 GHz with a variable flat conversion gain. The proposed down-converter is implemented utilizing the Miniature Hybrid-Microwave Integrated Circuit (MHMIC) technology. It is composed of a wideband double-balanced mixer, a Local Oscillator (LO) chain, and a differential TransImpedance Amplifier (TIA) with a variable gain. The designed mixer uses a novel topology exhibiting minimum reflection and high isolation between the RF and LO ports across a wide operating frequency of 30 GHz. In this topology, two balanced detectors generate the differential IF signal with minimum reflection. The characteristic impedance ($Z_0$) of the mixer is set to be $70.7$$\Omega$, to minimize trace widths to reduce the mutual coupling and increasing the bandwidth. The OPA 657 is the core of the designed differential TIA with a variable gain. In addition, the LO chain of the down-converter utilized a combination of an active (×2) and a passive (×3) multiplier to generate enough RF power in the desired frequency range. Also, a WR-12 waveguide to Substrate Integrated Waveguide (SIW) transition is designed for the RF and LO ports that operates through the E-band. The proposed down-converter demonstrates excellent performance, with a high isolation between RF and LO ports exceeding 22 dB and a maximum conversion gain of $-5$ dB, and a response with a variation of ±5 dB across the band. The proposed mixer exhibits a return loss of better than 10 dB at both RF and LO ports, and it consumes a power of 560 mW. Full article

Mitogen-activated protein kinases 3 and 6 (MPK3/MPK6) are central to pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) in Arabidopsis, yet the involvement of long noncoding RNAs (lncRNAs, >200 nt) in these pathways is poorly understood. Here, transcriptomic analyses were performed to compare lncRNA and protein-coding gene (PCG) expression profiles in wild-type (WT) and MPK3/MPK6-deficient (MPK6SR) Arabidopsis plants. These plants were inoculated with either Pseudomonas syringae pv. tomato (Pst) DC3000, which elicits both PTI and ETI, or its type III secretion-deficient mutant, Pst DC3000 hrcC⁻, which induces only PTI. RNA sequencing (RNA-seq) analysis of 18 samples identified 1388 known and 70 novel lncRNAs, among which differentially expressed lncRNAs (DElncRNAs) involved in disease resistance were further identified. Using integrative analyses, including weighted gene co-expression network analysis (WGCNA), prediction of lncRNA cis-regulatory targets for PCGs, and validation via reverse transcription-quantitative PCR (RT-qPCR), three core lncRNA-mediated regulatory modules were identified: (i) MPK3/MPK6-dependent PTI and ETI, where lncRNAs amplify signals; (ii) MPK3/MPK6-dependent PTI, where lncRNAs fine-tune basal immunity; and (iii) MPK3/MPK6-independent PTI and ETI, where lncRNAs serve as a backup regulatory network. These modules form a multi-layered immune regulatory network via cis- and trans-regulation and further enable the identification of lncRNA-PCG pairs involved in both regulatory modes. This work enhances the understanding of the molecular mechanisms underlying plant innate immunity. Full article

The structure and geomorphology of channel systems play a critical role in interpreting sedimentary processes and characterizing subsurface reservoir capacity. This study presents an innovative 3D DS-TransUnet model for seismic channel interpretation. The model incorporates a multi-scale Swin Transformer architecture capable of processing 3D data in both the encoder and decoder, and integrates a feature fusion module into the skip connections to effectively combine shallow detail features with deep semantic features, thereby enhancing the detectability of weak reflection signals. This design not only enables the network to capture global dependencies but also preserves fine-grained local details, allowing for more robust feature learning under complex geological conditions. In addition, a complete synthetic data generation workflow is proposed, through which 300 pairs of high-quality synthetic data were constructed for model training. During training, the proposed model achieved a significantly faster convergence speed compared with other selected models. Experimental results on both synthetic and field seismic datasets demonstrate that the proposed method yields substantial improvements in channel boundary delineation accuracy and interference suppression, providing an efficient and reliable approach for intelligent channel recognition. Full article