Search Results (21)

Recreational fisheries increasingly intersect with the habitats of flagship species, i.e., species that attract public attention and drive conservation efforts, raising potential ecological conflicts. This study investigated the spatial coupling between recreational fisheries and three flagship species in the Yangtze River Basin: the Chinese alligator (Alligator sinensis), the Yangtze finless porpoise (Neophocaena phocaenoides), and the scaly-sided merganser (Mergus squamatus). Drawing on over 10,000 fishing Points of Interest recorded between 2015 and 2024 and over 300 verified species occurrences, this study applied a Random Forest model with spatial integration and a Maximum Entropy model to examine estimated current distributions and forecast interactions from 2025 to 2035. Flagship species habitat suitability was modeled and projected at a spatial resolution of 1 km, while recreational fishing density was resolved on a coarser grid of 1.875° × 1.25° in latitude–longitude dimensions. Results reveal a substantial increase in high-risk overlap zones. For example, high-density fishing areas within high-suitability habitats for the scaly-sided merganser expanded from 0 km² in 2015 to 85,359 km² in 2024. Projections indicate continued intensification of such overlaps, particularly in regions including Ma’anshan–Wuhu, the Taihu–Chaohu–Poyang lake system, and Yibin. These findings offer robust, model-driven evidence of growing spatial conflicts and offer actionable insights for ecosystem-based governance. The methodological framework is transferable and supports broader applications in other regions and species under ecological sustainability goals. Full article

The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis; YFP) is the only freshwater cetacean species that remains in the Yangtze River, China. Poyang Lake is connected to the main stream of the Yangtze River, and the number of YFPs in Poyang Lake constitutes approximately half of the total species population. To implement effective conservation measures and formulate scientific genetic management strategies for the YFPs in Poyang Lake, we conducted population genetic analyses on 125 blood samples from the Poyang population and 46 tissue samples from the Anqing population, utilizing mitochondrial DNA D-loop and microsatellite loci. The genetic diversity analysis revealed two haplotypes in the Poyang population, with mitochondrial genetic diversity indices of Hd = 0.481 ± 0.020 and Pi = 0.00078 ± 0.00030. Microsatellite markers further demonstrated indices of Ho = 0.610 and He = 0.655. The genetic differentiation analysis indicated that the two populations exhibited moderate genetic differentiation (0.05 < Fst < 0.15). Upon excluding the dead samples from the Anqing population, the genetic differentiation between the two populations increased and the gene flow diminished. This indicated that certain dead samples from the Anqing population might have originated from Poyang Lake or had a background of Poyang Lake–Yangtze River migration and gene exchange. This finding was further corroborated by STRUCTURE analysis, which revealed genetic admixture between the two populations. We assessed the current genetic diversity of the Poyang population and its genetic differentiation from the Anqing population. This study provides fundamental data for formulating a conservation program for YFPs in Poyang Lake. Full article

Poyang Lake in China is the most critical habitat and final refuge for the Yangtze finless porpoise (Neophocaena asiaeorientalis), YFP. In 2022, its population reached approximately 492 individuals, an increase of 35 from the 457 individuals recorded in 2017, showing a steady upward trend. The infrequent movement of YFPs between Poyang Lake and the Yangtze River represents a considerable threat to the long-term viability of this population. Additionally, serious water shortages in the lake during the dry season have led the government to consider the establishment of a hydraulic project. Therefore, a reliable risk assessment and quantitative analysis of conservation scenarios are urgently needed for this population. Population viability analysis of the YFP population in Poyang Lake was conducted using the VORTEX software. The baseline model predicted a probability of extinction of 0.241 over the next 100 years, with no probability of extinction in the first 30 years; the genetic diversity would be on a continuous downward trend and decline by 91.5%. The comprehensive protection model predicted a probability of extinction of 0.0028 and that the genetic diversity would be maintained at about 0.996 in 100 years. Breeding rate, sex ratio at birth, mortality rate, and gene flow were the factors that were sensitive to maintaining population viability. The results showed that the population of YFPs in Poyang Lake was at a high risk of extinction due to the decline in genetic diversity and the higher mortality and lower birth rate caused by habitat degradation. A total ban on productive fishing and the rescue and interchange of YFPs are conducive to enhancing the viability of the YFP population in Poyang Lake. Full article

The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis, YFP) possesses the ability to detect distance through echolocation signals, and its sonar signal signature is adjusted to detect different targets. In order to understand the vocal characteristics of YFPs in different behavioral states and their differential performance, we recorded the vocal activities of YFPs in captivity during free-swimming, feeding, and nighttime resting and quantified their signal characteristic parameters for statistical analysis and comparison. The results showed that the number of vocalizations of the YFPs in the daytime free-swimming state was lower than that in the feeding and nighttime resting states, and the echolocation signals emitted in these three states showed significant differences in the −10 dB duration, −3 dB bandwidth, −10 dB bandwidth, and root-mean-square (RMS) bandwidth. Analysis of the resolution of the echolocation signals of the YFPs using the ambiguity function indicated that their distance resolution could reach the millimeter level. These results indicate that the echolocation signal characteristics of YFPs present diurnal differences and that they can be adjusted with changes in their detection targets. The results of this study can provide certain scientific references and foundations for the studies of tooth whale behavioral acoustics, and provide relevant scientific guidance for the conservation and management of YFPs. Full article

The Yangtze finless porpoises (Neophocaena asiaeorientalis asiaeorientalis) living in different environments display significant differences in behavior and physiology. To compare and analyze gene expression differences between an ex situ population and a controlled environment population of the Yangtze finless porpoise, we sequenced the transcriptome of blood tissues living in a semi-natural reserve and an artificial facility, respectively. We identified 6860 differentially expressed genes (DEGs), of which 6603 were up-regulated and 257 were down-regulated in the controlled environment vs ex situ comparison. GO and KEGG enrichment analysis showed that the up-regulated genes in the controlled environment population were significantly associated with glucose metabolism, amino acid metabolism, and the nervous system, while those up-regulated in the ex situ population were significantly associated with energy supply and biosynthesis. Further analysis showed that metabolic and hearing-related genes were significantly affected by changes in the environment, and key metabolic genes such as HK, PFK, IDH, and GLS and key hearing-related genes such as OTOA, OTOF, SLC38A1, and GABBR2 were identified. These results suggest that the controlled environment population may have enhanced glucose metabolic ability via activation of glycolysis/gluconeogenesis, the TCA cycle, and inositol phosphate metabolism, while the ex situ population may meet higher energy requirements via enhancement of the amino acid metabolism of the liver and muscle and oxidative phosphorylation. Additionally, the acoustic behavior and auditory-related genes of Yangtze finless porpoise may show responsive changes and differential expression under different environment conditions, and thus the auditory sensitivity may also show corresponding adaptive characteristics. This study provides a new perspective for further exploration of the responsive changes of the two populations to various environments and provides a theoretical reference for further improvements in conservation practices for the Yangtze finless porpoise. Full article

The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis, YFP) is an endangered species endemic to the Yangtze River in China, and it is the only freshwater whale in the genus Neophocaena. In terms of protection, three effective conservation strategies exist: in situ conservation, ex situ conservation, and artificial breeding, all of which have been implemented by the Chinese government. Of these, ex situ conservation involves the relocation of Yangtze finless porpoises to semi-natural waters with less human interference, and artificial breeding involves the relocation of Yangtze finless porpoises to a controlled environment that is more strictly managed. To compare and analyze the responsive changes in gene expression of the YFPs between the ex situ and controlled environments, we performed the RNA sequencing of blood tissues from these YFPs. A total of 1201 differentially expressed genes (DEGs) were identified, of which 423 were up-regulated in the ex situ population and 778 were up-regulated in the controlled-environment population. Gene enrichment analysis showed that 1201 DEGs between the ex situ and controlled-environment populations were generally enriched for vision-, digestion- and immune-system-related pathways. Further analysis revealed that several key immune system pathways, such as the chemokine signaling pathway and B cell receptor signal pathway, were activated in the ex situ population. In addition, the key pathways related to vision, including phototransduction and the inflammatory mediator regulation of TRP channels, as well as the pathways related to the digestive system, such as protein digestion and absorption and salivary secretion, were activated in the controlled-environment population. These results suggest that the ex situ populations may respond to complex environmental conditions in semi-natural waters by enhancing their immune function through the increased expression of immune-related genes and that the visual function and protein digestion of the YFPs were improved compared to those of the ex situ population based on the conditions of artificial feeding, such as the higher transparency of the water and regular feeding. This study provides clues for evaluating the adaptability of YFPs to different environments and is a useful reference for future ex situ conservation and artificial breeding. Full article

Seasonal water-level fluctuations can profoundly impact nutrient dynamics in aquatic ecosystems, influencing trophic structures and overall ecosystem functions. The Tian-e-Zhou Oxbow of the Yangtze River is China’s first ex situ reserve and the world’s first successful case of ex situ conservation for cetaceans. In order to better protect the Yangtze finless porpoise, the effects of water-level fluctuations on the trophic structure in this oxbow cannot be ignored. Therefore, we employed stable isotope analysis to investigate the changes in the trophic position, trophic niche, and contribution of basal food sources to fish during the wet and dry seasons of 2021–2022. The research results indicate that based on stable isotope analysis of the trophic levels of different dietary fish species, fish trophic levels during the wet season were generally higher than those during the dry season, but the difference was not significant (p > 0.05). Fish communities in the Tian-e-Zhou Oxbow exhibited broader trophic niche space and lower trophic redundancy during the wet season (p < 0.05), indicating a more complex and stable food web structure. In both the wet and dry seasons, fish in the oxbow primarily relied on endogenous carbon sources, but there were significant differences in the way they were utilized between the two seasons (p < 0.05). In light of the changes in the trophic structure of the fish during the wet and dry seasons, and to ensure the stable development of the Yangtze finless porpoise population, we recommend strengthening the connectivity between the Tian-e-Zhou Oxbow and the Yangtze River. Full article

Sound reception was investigated in the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis) at its most sensitive frequency. The computed tomography scanning, sound speed, and density results were used to develop a three-dimensional numerical model of the porpoise sound-reception system. The acoustic fields showed that sounds can reach the ear complexes from various pathways, with distinct receptivity peaks on the forward, left, and right sides. Reception peaks were identified on the ipsilateral sides of the respective ears and found on the opposite side of the ear complexes. These opposite maxima corresponded to subsidiary hearing pathways in the whole head, especially the lower head, suggesting the complexity of the sound-reception mechanism in the porpoise. The main and subsidiary sound-reception pathways likely render the whole head a spatial receptor. The low-speed and -density mandibular fats, compared to other acoustic structures, are significant energy enhancers for strengthening forward sound reception. Based on the porpoise reception model, a biomimetic receptor was developed to achieve directional reception, and in parallel to the mandibular fats, the silicon material of low speed and density can significantly improve forward reception. This bioinspired and biomimetic model can bridge the gap between animal sonar and artificial sound control systems, which presents potential to be exploited in manmade sonar. Full article

Using the VORTEX v. 10. 5.0.0, population viability analysis (PVA) was performed for Yangtze finless porpoise (YFP, Neophocaena asiaeorientalis) in the highest density section between Hukou and Meilong section (HMS) of the Yangtze River. Baseline model showed that this population was in a relatively vulnerability state; the deterministic growth rate (Det-r) was −0.0230; the stochastic growth rate (Stoch-r) was −0.0385; the probability of extinction (PE) was 0.5690; the mean population size of extant populations (N-extant) was 22; the genetic diversity (GD) was 0.7698. Under the general protection model, the Det-r was 0.0015, and the Stoch-r was −0.0092; Under the medium protection model, the Det-r was 0.0219, and the Stoch-r was 0.0144; Under the optimal protection model, the Det-r was 0.0383, and the Stoch-r was 0.0357. Sensitivity analysis found that adult females breeding rate, sex ratio at birth, and mortality rate of juvenile YFP were sensitive to maintaining population stability. The PVA showed that the conservation of YFP population in HMS depends on: neutralization of all threats affecting YFP population in the HMS; maintenance and, whenever possible, enhancement of the functional connectivity of the waterbody, increasing the food resources of YFP and reducing the risk of injury to YFP caused by human. Full article

Underwater noise pollution caused by human activities may affect freshwater cetaceans to different degrees. To analyze the impacts of water intake pontoons on Yangtze finless porpoises (Neophocaena asiaeorientalis), this study collected underwater noise data from such a pontoon in a nature reserve, plotted the power spectral density of acoustic signals, and calculated the root mean square sound pressure levels and the magnitude of sound source levels. The 1/3-octave sound pressure level root mean square values at the transient holding pens were <18.0 kHz, 39.5−60.0 kHz, which were slightly higher than the Yangtze finless porpoise hearing threshold curve values and therefore could be perceived. However, the results indicated that the porpoises would not develop a temporary hearing threshold shift. Meanwhile, pontoon noise did not interfere with the porpoises’ high-frequency acoustic signal nor did it affect their echolocation; it significantly interfered with their low-frequency acoustic signal, however, and the mother–child communication of the finless porpoises was affected, but this effect was quickly compensated due to the limited space range of the holding pens. Through this study of Yangtze finless porpoises, this paper provides a reference for assessing whether human facilities have impacts on freshwater cetaceans. Full article

Increasing anthropogenic activities are threatening freshwater ecosystems worldwide. Sand mining in Poyang Lake has significantly impacted the wetland ecosystem over the past 20 years, yet a quantitative analysis of these impacts remains insufficient. Here, we used 63 Landsat images taken from 2000 to 2020 along with the support vector machine (SVM) method and a retrieval model of suspended sediment concentration (SSC) to identify sand mining vessels and areas affected by sand mining. Then, we analyzed the changes in landscape patterns in the areas affected by sand mining. The potential impact of underwater noise generated by sand mining vessels on Yangtze finless porpoises was analyzed by a sound propagation model. The number of sand mining vessels in Poyang Lake during the flood, normal, and dry seasons increased from 2000 to 2016 but rapidly decreased from 2017 to 2020. Sand mining vessels were mainly distributed in the northern channel from 2000 to 2006, moved toward the center of the lake from 2007 to 2010, then moved northward in 2017. Within the areas affected by sand mining, water and mudflats declined, grassland and sandbars increased, and the landscape discontinuity increased. The habitat of the Yangtze finless porpoise affected by underwater noise from sand mining vessels in all seasons has significantly increased overtime. The mean area of the affected habitats was 70.65% (dry), 64.48% (normal), and 63.30% (flood) of the total habitat areas. The porpoise habitats in the northern channel and the west branch of the Ganjiang River are more seriously affected by the underwater noise of sand mining vessels than the southern lake. The impact of sand mining activities on wetland landscape and aquatic species demands systematic investigation in the future. Full article

Freshwater cetaceans that inhabit river basins with seasonally changing hydrological regimes have a higher risk of stranding, leading to increased mortality and population decline. In Poyang Lake, the stranding risk of the critically endangered Yangtze finless porpoise are high, due to the significant differences in hydrological and landscape conditions between the flood and dry seasons. However, this stranding information is not well recorded, resulting in poorly guided investigation and rescue efforts. We here employ remote sensing and hydrodynamic modeling to obtain four evaluation indicators in dry, normal, and flood scenarios in Poyang Lake. Results show that nearly 50% of the largest habitat range of the porpoises in the flood season will be land areas during the dry season, and that landscape fragmentation between land and water has increased over the past three decades. In all scenarios, the mean water depth of the habitat varied from 1.77 to 4.89 m from September–February. In the dry scenario, about 59% of the habitat experiences a water depth of <1 m within 15 days. The high stranding risk area is 284.54 km² in the dry scenario, >251.04 km² in the normal scenario, and >90.12 km² in the flood scenario. High-stranding risk areas are located within city boundaries, where porpoise stranding cases have been recorded, especially in Duchang, which has the most high-risk areas in all scenarios. In all scenarios, the high stranding risk area has an average bathymetry of 7.81 m and an average water depth between 1.75 and 5.54 m. Our results can guide future investigations to establish sound stranding networks, and the methods proposed here are also applicable to studies of other freshwater cetaceans facing severe stranding risk. Full article

The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis, YFP) is a critically endangered small odontocete species, mainly distributed in the middle and lower reaches of the Yangtze River, Poyang Lake, and Dongting Lake. Under the influence of human activities, many factors are threatening the survival and reproduction of YFPs in their natural habitat. Ex situ conservation is of great significance to strengthen the rescuing conservation of YFPs by providing suitable alternative habitats and promoting the reproduction and growth of the ex situ population. To reveal the differences in gene expression of YFPs in natural and ex situ protected waters, and to investigate the effects of environmental factors on YFPs and their mechanisms, we performed transcriptome sequencing for blood tissues of YFPs collected from natural waters and ex situ protected waters. Using RNA-seq we identified 4613 differentially expressed genes (DEGs), of which 4485 were up-regulated and 128 were down-regulated in the natural population. GO analysis showed that DEGs were significantly enriched in entries related to binding, catalytic activity, and biological regulation; KEGG analysis showed that DEGs were enriched mainly in signal transduction, endocrine system, immune system, and sensory system-related pathways. Further analysis revealed that water pollution in natural waters may affect the hormone secretion of YFPs by altering the expression pattern of endocrine genes, thus interfering with normal endocrine activities; noise pollution may induce oxidative stress and inflammatory responses in YFPs, thus impairing the auditory function of YFPs. This study provides a new perspective for further research on the effect of habitat conditions on the YFPs and suggests that improving the habitat environment may help in the conservation of YFPs. Full article

The Yangtze finless porpoise (Neophocaena asiaeorientalis) is the sole freshwater subspecies of Neophocaenaphocaenoides, and there is a lack of data on its transcriptome. In this study, we applied RNA-seq technology to assemble, de novo, a transcriptome and analyzed differential expressed genes (DEGs). About 6 Gb of clean data was generated for the Yangtze finless porpoise blood (n = 6) through de novo sequencing. In total, 151,211 unigenes were generated and a total of 119,039 of these unigenes (78.72%) were functionally annotated when searched for within the NCBI Nr, SwissProt, GO, COG, and KEGG databases. Diverse and extensive expressed gene catalogs were sampled for the Yangtze finless porpoise. DESeq2 was used to analyze the differential expression genes (DEGs) obtained from the assembled transcriptome. The results indicated that DEGs have close relationships with the Yangtze finless porpoise’s development, evolution and adaptation. Further, we found that genes involved in cetacean TAG synthesis might directly explain the molecular basis of cetacean blubber thickening. These transcriptome data will assist in understanding molecular mechanisms of Yangtze finless porpoise adaptation. Full article

Yangtze finless porpoises use high-frequency clicks to navigate, forage, and communicate. The way in which click production may vary depending on social or environmental context has never been investigated. A group of five captive Yangtze finless porpoises was monitored for one year, and 107 h of audio recordings was collected under different conditions. Using a MATLAB-generated interface, we extracted click density (i.e., number of clicks per minute) from these recordings and analyzed its variation depending on the context. As expected, click density increased as the number of animals present increased. The click density did not exhibit diurnal variations but did have seasonal variations, with click density being highest in summer and fall. Yangtze finless porpoises produced more clicks when socially separated than when not (136% more), during training/feeding sessions than outside of such sessions (312% more), when enrichment was provided (265% more on average), and when noisy events occurred rather than when no unusual event occurred (22% more). The click density decreased when many visitors were present in the facility (up to 35% less). These results show that Yangtze finless porpoises modulate their click production depending on the context and suggest that their echolocation activity and their emotional state may be linked to these changes. Such context-dependent variations also indicate the potential usefulness of monitoring acoustical activity as part of a welfare assessment tool in this species. Additionally, the click density variation found in captivity could be useful for understanding click rate variations of wild populations that are hardly visible. Full article