Search Results (266)

Fungal endophytes can be identified in a wide range of plant species which help to protect from both abiotic and biotic stressors. This research focused on using high-throughput sequencing (HTS) analysis to gain insight into the foliar endophytic fungal diversity between Morinda tinctoria and Pithecellobium dulce. The study obtained a total of 118,547 sequencing reads, which were grouped into 266 Operational Taxonomic Units (OTUs) with a 97% similarity threshold. M. tinctoria had more OTUs than P. dulce. Alpha diversity results show that both plant species support varied microbial communities with similar but distinct biodiversity profiles. The Shannon index revealed that M. tinctoria had considerably more fungal diversity than P. dulce. The correlation matrix and PCoA depicts the pairwise correlations between several soil metrics such as the total nitrogen level, entire phosphorus, overall potassium, and the electrical conductivity, total carbon from organic matter, pH levels, manganese, iron, zinc, copper, and boron. The OTUs were classified into 5 phyla, 18 classes, 40 orders, 70 families, and 36 genera, where the phylum Ascomycota has a relative abundance of (50–55%), followed by Basidiomycota at (55–60%). The most abundant genera were Wallemia (30–35%), Saitozyma (30–40%), and Talaromyces (20–25%), with average relative abundances. Unassigned genera show a significant proportion of fungal taxa that are still taxonomically unclear. A comparative analysis has been performed between the two plants, M. tinctoria has a higher fungal diversity, which is frequently associated with increased ecological stability, disease resistance, and better functional relationships with the host plant. Full article

Rhizoctonia solani (Rs) and Sclerotinia sclerotiorum (Ss) are devastating pathogens of rice and rapeseed, contributing 20–69% and 10–50% of yield losses, respectively. These pathogens develop resistant overwintering and/or oversummering sclerotia, which serve as inocula for infection in the subsequent season under favorable conditions. The present study was designed to investigate the month-wise variation in microbial diversity by mixing Rs and Ss sclerotia separately in rice-rapeseed rotation field soil, thereby identifying key microbial players associated with specific sclerotia and their implications for subsequent crops. Therefore, we incubated 2.5 g of Rs and Ss sclerotia in 100 g of soil for 3 months to mimic the field conditions and subjected month-wise soil samples to 16S rRNA and ITS2 sequencing. Data analysis of bacterial communities revealed diversity, richness, and evenness in Ss treated soil samples compared to the control, while fungal communities exhibited less diversity. These results were also evident in PCoA and hierarchical clustering, where control and treated samples were scattered in 16S rRNA and ITS sequencing. Genus level diversity exhibited enrichment of bacterial genera with known beneficial potential, notably Acidibacter, Stenotrophobacter, Sphingomonas, Flavisolibacter, Gaiella, and Neobacillus in control. Beneficial bacterial genera such as Ramlibacter, Geomonas, Kofleria, Nitrospira, and Paraflavitalea were enriched in Ss treated soil samples. The addition of Ss and Rs sclerotia activated several beneficial fungi, notably Trichoderma, Talaromyces, Clonostachys in Ss treated samples, and Vermispora, Hyalorbilia, Mortierella, Lecanicillium in Rs treated samples. Additionally, Rs treated soil samples also activated pathogenic genera, including Typhula, Fusarium, and Rhizoctonia. Sclerotia in soil modulates the microbiome and activates beneficial and pathogenic microbes. During the off-season, the Sclerotinia inoculum pressure in the soil reduces, and it is safe to grow crops next season. Whereas, in the case of Rhizoctonia infected soil, it is suggested to avoid growing crops susceptible to wilt, root rot, and blight. However, field experiments to understand the pathogen–pathogen interactions around the sclerotiosphere require further exploration. Full article

Heavy metal (HM) contamination of soil is a worldwide problem with adverse consequences for the environment and human health. Microorganisms, as the most active fraction in soil, play a pivotal role in assessing changes in soil quality and maintaining ecological equilibrium. Accordingly, screening efficient microorganisms for remediating contaminated soils has emerged as a key research focus. This study employed high-throughput sequencing and conducted in situ field surveys to investigate the impacts of long-term HM pollution with varying severity on soil physicochemical properties, as well as the community structure and diversity of bacteria and fungi. The results showed that the major soil physiochemical properties and the bacterial and fungal β diversity significantly changed with the increase in HM pollution levels. The relative abundances of Chloroflexi, Myxococcota and Nitrospirota among bacteria, along with Chytridiomycota and Talaromyces among fungi, increased significantly with rising HM pollution levels. In low-, medium- and highly contaminated soils, the dominant bacterial species were OTU10618 (Micrococcales), OTU6447 (Chthoniobacterales), and OTU7447 (Burkholderiales), while the dominant fungal species were OTU3669 (Glomerellales), OTU397 (Olpidiales), and OTU2568 (Mortierellales). Bacterial communities were mainly affected by soil-available phosphorus, available cadmium (Cd) and available Pb, while fungal communities were predominantly influenced by soil-available phosphorus, soil organic carbon and total Pb content. These findings demonstrate that soil microorganisms in chronically HM-contaminated soils exhibit adaptive shifts, and this study thereby provides critical implications for assessing the remediation potential of diverse microbial taxa in HM-polluted soils. Full article

This study investigates the diversity and provides a preliminary evaluation of the enzymatic potential of culturable fungi present in two-phase olive mill waste (TPOMW), a lignocellulose- and phenolic-rich agro-industrial by-product generated in large quantities in olive oil-producing countries. Ninety-four isolates, representing 31 species of the phyla Ascomycota, Basidiomycota, and Mucoromycota, were obtained and identified by using ITS, 28S, tef1-α, tub2, rpb2, act, and/or cal sequences. Among the identified taxa, two new Trichoderma species within the Harzianum clade, namely Trichoderma amurcicola (phylogenetically related to T. simile and T. guizhouense) and Trichoderma olivarum (phylogenetically related to T. simmonsii), were described following a multilocus phylogenetic analysis combined with a study of their morphoanatomical features. A rather high phylogenetic divergence was detected in Candida boidinii, Pleurostoma richardsiae, and Mucor circinelloides, while Cladosporium limoniforme, Mucor pseudolusitanicus, Stagonosporopsis ailanthicola, and Talaromyces nanjingensis were recorded for the first time in TPOMW. A preliminary screening revealed 29 species with cellulolytic and/or xylanolytic activities; 26 species displayed dye decolorization capacity, while ligninolytic and laccase activities were restricted to a few taxa. The most promising degraders of lignocellulosics included strains of Cladosporium limoniforme, C. ramotenellum, Fuscoporia ferrea, Peniophora lycii, and Pseudophlebia setulosa. Fungi detected in TPOMW are promising biotechnological tools to be exploited in the frame of circular economy applications. Full article

This study investigated the occurrence of fungi and mycotoxins throughout the rice processing chain, from paddy rice to final white rice, in two rice varieties (variety I and variety II). A total of 75 fungal isolates were identified, belonging to the genera Penicillium, Alternaria, Aspergillus, Fusarium, and Talaromyces. Variety I exhibited a higher prevalence of Penicillium and Alternaria, whereas Variety II was dominated mainly by Alternaria, accounting for 63% of all isolates. Multi-mycotoxin screening of 22 mycotoxins revealed contamination by tenuazonic acid (TeA), zearalenone (ZEN), and 15-acetyl-deoxynivalenol (15-AcDON), with TeA concentrations exceeding 4000 µg/kg in whitened rice of variety II. Cluster analysis showed paddy and brown rice grouping together due to higher fungal loads and toxin levels, whereas whitened and final white rice clustered separately, reflecting reduced fungal counts but persistence of TeA, 15-AcDON, ZEN, and citrinin (CIT). The co-clustering of Alternaria with TeA and ZEN indicates strong field-related contamination. Although processing significantly decreased fungal loads, residual toxins persisted, emphasizing that rice polishing does not fully mitigate mycotoxin risks. These findings underscore the need for comprehensive surveillance and integrated management practices across the rice supply chain to minimize potential health hazards associated with fungal contaminants and their toxic metabolites. Full article

Air pollution remains one of the most urgent global challenges, affecting both public health and environmental integrity, with its severity escalating in parallel with industrialization and urban expansion. Defined as the presence of harmful substances in the atmosphere, air pollution poses risks to human health and disrupts the development of plant and animal life. Urban areas, particularly large cities, frequently exhibit pollutant concentrations that exceed safety thresholds established by the World Health Organization (WHO). This study presents a comprehensive analysis of airborne fungal microbiota in two distinct districts of Sofia, Bulgaria: the highly urbanized city center (Orlov Most) and a less urbanized southwestern area (New Bulgarian University, Ovcha Kupel). Weekly fluctuations in mold spore abundance were monitored, revealing elevated contamination levels on Fridays, likely due to intensified vehicular traffic preceding weekends and public holidays. Taxonomic identification of dominant mold species was conducted using both classical and molecular genetic methods. The isolated fungal strains predominantly belonged to the phylum Ascomycota (80%), with Talaromyces and Alternaria emerging as the most prevalent genera. Additionally, antifungal susceptibility testing indicated that most isolates were sensitive to commonly used antifungal agents, although resistance was observed in two strains of Talaromyces wortmannii. These findings underscore the significance of fungal bioaerosols in urban air quality assessments and highlight the need for targeted monitoring and mitigation strategies. Full article

Modern agriculture requires effective and sustainable tools to enhance crop performance while minimizing the environmental impact. In this context, the application of fungal-derived bioactive compounds directly onto seeds represents a promising alternative. In this study, tomato seeds (Solanum lycopersicum) were subjected to mycopriming treatment using two fungal extracts obtained from the mycelium and culture filtrate of Talaromyces ruber. Two independent greenhouse trials were conducted to assess germination dynamics, morphometric traits, and physiological parameters (chlorophyll content, flavonol index, and anthocyanin index). Although germination rates were not significantly affected, root development was consistently enhanced by the treatments compared with the control group in both experiments. In contrast, no clear improvement was observed in shoot growth or leaf physiological parameters. Overall, the application of T. ruber extracts via seed priming proved to be a feasible strategy to stimulate early-stage root development in tomatoes, potentially contributing to improved seedling vigor and agronomic performance. These findings support the potential use of fungal extracts as practical tools for improving seedling quality in commercial nursery production. Full article

Six new alkaloid compounds, including two rare aromatic nitrile compounds talaronitriles A–B (1–2), a novel oxime-functionalized azadiphilone analogue talarooxime A (3), a new phenylhydrazone alkaloid talarohydrazone E (4), and two new dipeptide compounds talarodipeptides A–B (5–6), were isolated from the deep-sea cold-seep-derived fungus Talaromyces amestolkiae HDN21-0307 via OSMAC approach. Compound 1 is the first natural naphthalene compound with cyano groups. Compound 3 represents the first natural product containing an oxime-functionalized azadiphilone scaffold. Their structures and absolute configurations were elucidated through spectroscopic data analysis and quantum chemical calculations. Notably, compound 3 demonstrated moderate DPPH free-radical-scavenging activity, with an IC₅₀ value of 29.41 μM. Full article

Talaromyces pinophilus is a filamentous fungus with notable lignocellulose-degrading capacity based on enzyme activities and protein secretion potential, making it a compelling candidate for industrial biotechnology applications. In this study, we present the genomic characterization of the highly cellulolytic strain Y117, a domesticated variant of T. pinophilus, based on whole-genome sequencing and comparative genomic analysis with eleven related strains. Comprehensive analysis of CAZymes, transcription factors, and secondary metabolite diversity in T. pinophilus strains revealed that the exceptional lignocellulose degradation capacity of Y117 is driven by its unique genomic architecture. Key genomic features that distinguish Y117 include (1) significant expansion of glycoside hydrolase (GH) and carbohydrate-binding module (CBM) families, (2) loss of fungal-RiPP-like clusters, and (3) absence of the developmental regulator BrlA. These genomic adaptations could indicate a metabolic trade-off favoring hydrolytic enzyme production over secondary metabolism and sporulation. Our findings provide fundamental insights into fungal lignocellulose degradation mechanisms while establishing Y117 as a promising chassis for metabolic engineering applications in industrial enzyme production and heterologous protein expression. Full article

Brewer’s spent grain (BSG) is the main solid byproduct of the brewing industry, generated in large quantities worldwide. Its high organic content and availability make it an attractive substrate for biotechnological valorization and recycling within a circular economy framework, contributing to the recovery and reuse of agro-industrial residues. This study investigates the potential of Talaromyces stollii I05.06 to simultaneously produce laccase and release phenolic compounds through submerged fermentation (SmF) using BSG as the sole carbon source. Initial SmF trials confirmed the fungus’s capacity to metabolize BSG. Subsequent fermentations with phosphate buffer supplementation (100 mM) significantly enhanced laccase activity (1535 ± 151.6 U·L⁻¹ on day 5) and phenolic content (6.28 ± 0.07 mg GAE per 100 g on day 1 with 50 mM buffer). However, the addition of typical laccase inducers (Cu²⁺ and Mn²⁺) led to inhibitory effects. The results highlight T. stollii I05.06 as a promising microorganism for the integrated valorization of BSG, contributing to sustainable agro-industrial waste management and the development of value-added bioproducts. Full article

Talaromycosis caused by Talaromyces marneffei is a life-threatening mycosis in patients with acquired immunodeficiency syndrome (AIDS). The gold-standard diagnostic method relies on time-consuming cultures, which delay treatment and increase mortality. In this study, we developed a rapid and sensitive droplet digital PCR (ddPCR) assay targeting the internal transcribed spacer (ITS) gene for detecting T. marneffei and compared its performance with blood culture and quantitative PCR (qPCR) assays. The ddPCR assay had a detection limit of one copy/reaction, making it 10-fold more sensitive than qPCR. It demonstrated 100% specificity for T. marneffei, with no cross-reactivity to 15 other fungal pathogens, six bacterial pathogens, and plasma from 119 AIDS patients without talaromycosis. In 119 AIDS patients with talaromycosis, ddPCR exhibited better overall sensitivity (92.44%) than blood culture (86.55%) and qPCR (87.29%). The sensitivity of ddPCR was 97.8% (89/91) and 75% (21/28) in plasma collected before and after antifungal therapy, respectively. Moreover, fungal load measured by ddPCR negatively correlated with the time to blood culture positivity. Fungal loads in patients receiving antifungal therapy were significantly lower than those in untreated patients. These findings indicate that ddPCR facilitates rapid diagnosis of T. marneffei infection in AIDS patients and can assist clinicians in evaluating treatment efficacy by quantifying fungal load. Full article

A new trinor-sesterterpenoid penitalarin D (1), with a 3,6-dioxabicyclo[3.1.0]hexane moiety, as well as two known compounds, penitalarin C (2) and nafuredin A (3), were obtained from the mangrove sediment-derived Talaromyces sp. SCSIO 41412. Their structures were determined by detailed NMR, MS spectroscopic analyses, and ECD calculations. Penitalarin D (1) and nafuredin A (3) showed toxicity or no toxicity against HepG2 cells at a concentration of 200 μM. The transcriptome sequencing and bioinformatics analysis revealed that 3 could be effective by regulating ferroptosis pathways in HepG2 cells, which was subsequently validated by RT-qPCR, demonstrating significant upregulation of ferroptosis-related genes. Pre-treatment with 3 could mitigate hypoxia-reoxygenation-induced damage in the oxygen glucose deprivation/reperfusion (OGD/R) cell model. Given the structural similarity of compounds 1, 2, and 3, we also screened compounds 1 and 2 in an AML12 OGD/R model. As no significant activity was observed, compound 3 was selected for subsequent in vivo studies. Subsequently, in vivo experiments demonstrated that 3 could significantly decrease pro-inflammatory cytokines and display the hepatoprotective effects against hepatic ischemia-reperfusion injury (HIRI). These findings identified nafuredin A (3) as a promising hepatoprotective agent for new drug development. Full article

Fusarium culmorum is the causal agent of root rot and crown rot in soft wheat. The aim of this study was to investigate the control mechanism of Talaromyces pinophilus HD25G2 as a biocontrol agent against F. culmorum. This involved the isolation and molecular identification of Fusarium and Talaromyces strains from soft wheat. The assay included the inhibition test of F. culmorum mycelial growth on potato dextrose agar and soft wheat media at two water activity values (0.98 and 0.95), its production of mycotoxins, and the fungal cell wall-degrading enzymes implicated in the antagonistic effect of T. pinophilus. The results showed that T. pinophilus and its extract free of cells reduced the growth of F. culmorum by over 55%. Interestingly, the T. pinophilus HD25G2 showed high chitinase, protease, and cellulose production on solid media. In addition, chitinolytic and proteolytic activities were estimated at the values of 1.72 ± 0.02UI and 0.49 ± 0.01UI, respectively. However, the mycotoxin evaluation assay revealed that F. culmorum HD15C10 produced zearalenone (ZEA) and the biocontrol agent enhanced its production, but the early inoculation of T. pinophilus, before F. culmorum growth onset, inhibited 100% its growth and, therefore, prevented the presence of ZEA. Hence, this strain can be proposed as a biocontrol agent against F. culmorum, and it can be further investigated for biocontrol of Fusarium root and crown rot in vivo. Full article

Concern over the presence of pharmaceutical waste in the environment has prompted research into the management of emerging organic micropollutants (EOMs). In response, sustainable technologies have been applied as alternatives to reduce the effects of these contaminants. This study investigated the capacity of filamentous fungi isolated from iron mine soil in the Amazon region to biodegrade the drug chloroquine diphosphate. An initial screening assessed the growth of four fungal strains on solid media containing chloroquine diphosphate: Trichoderma pseudoasperelloides CBMAI 2752, Penicillium rolfsii CBMAI 2753, Talaromyces verruculosus CBMAI 2754, and Penicillium sp. cf. guaibinense CBMAI 2758. Among them, Penicillium sp. cf. guaibinense CBMAI 2758 was selected for further testing in liquid media. A Box–Behnken factorial design was applied with three variables, pH (5, 7, and 9), incubation time (5, 10, and 15 days), and chloroquine diphosphate concentration (50, 75, and 100 mg·L⁻¹), totaling 15 experiments. The samples were analyzed by gas chromatography–mass spectrometry (GC-MS). The most effective conditions for chloroquine biodegradation were pH 7, 100 mg·L⁻¹ concentration, and 10 days of incubation. Four metabolites were identified: one resulting from N-deethylation M1 (N4-(7-chloroquinolin-4-yl)-N1-ethylpentane-1,4-diamine), two from carbon–carbon bond cleavage M2 (7-chloro-N-ethylquinolin-4-amine) and M3 (N1,N1-diethylpentane-1,4-diamine), and one from aromatic deamination M4 (N1-ethylbutane-1,4-diamine) by enzymatic reactions. The toxicity analysis showed that the products obtained from the biodegradation of chloroquine were less toxic than the commercial formulation of this compound. These findings highlight the biotechnological potential of Amazonian fungi for drug biodegradation and decontamination. Full article

The diversity and distribution of medical and veterinary-relevant fungal diseases in Africa underscore the critical need for a multisectoral One Health strategy to enhance cost-effective preparedness and prevention. This review explores the geographic spread and epidemiology of key medical and veterinary fungi, including Emergomyces, Blastomyces, Coccidioides, Cryptococcus, Dermatophytes, Histoplasma, Sporothrix, Talaromyces, Paracoccidioides, Aspergillus, and Malassezia. Evidence indicates that many of these infections remain underdiagnosed and underreported, especially in vulnerable immunocompromised populations, due to limited surveillance, diagnostic capacity, and awareness. The increasing prevalence of these diseases, often in tandem with rising HIV rates and environmental changes, highlights the urgent need for coordinated efforts across human, animal, and environmental health sectors. Implementing comprehensive, multisectoral interventions—focused on enhancing diagnostic capabilities, public awareness, surveillance, and cross-sector collaboration—is vital for effective prevention and control of these emerging fungal threats in Africa. Full article