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Search Results (341)

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7 pages, 1785 KiB  
Proceeding Paper
Optimizing a Cu-Ni Nanoalloy-Coated Mesoporous Carbon for Efficient CO2 Electroreduction
by Manal B. Alhamdan, Ahmed Bahgat Radwan and Noora Al-Qahtani
Mater. Proc. 2025, 22(1), 2; https://doi.org/10.3390/materproc2025022002 - 16 Jul 2025
Viewed by 79
Abstract
Reducing atmospheric carbon dioxide is a critical global priority. This study investigates the influence of Cu-Ni nanoalloy loading on the CO2 electroreduction efficiency in the context of mesoporous carbon supports. Current methods struggle when it comes to catalyst efficiency, selectivity, and longevity. [...] Read more.
Reducing atmospheric carbon dioxide is a critical global priority. This study investigates the influence of Cu-Ni nanoalloy loading on the CO2 electroreduction efficiency in the context of mesoporous carbon supports. Current methods struggle when it comes to catalyst efficiency, selectivity, and longevity. By synthesizing copper–nickel nanoparticles through chemical reduction and depositing them on porous carbon, this research aimed to optimize catalyst loading and understand the structure–activity relationships. Catalyst performance was evaluated using chronoamperometry and linear sweep voltammetry (LSV). The results showed that 12 wt% catalyst loading achieved optimal CO2 reduction, outperforming its 36 wt% counterpart by balancing the catalyst quantity. This study reveals that 12 wt% Cu-Ni loading provides a higher CO2 reduction current density and greater long-term stability than 36 wt% loading, owing to better nanoparticle dispersion and reduced aggregation. Unlike previous Cu-Ni/mesoporous carbon studies, this work uniquely compares different loadings to directly correlate the structure, electrochemical performance, and catalyst durability. Full article
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12 pages, 1617 KiB  
Article
Genomic Analysis of Reproductive Trait Divergence in Duroc and Yorkshire Pigs: A Comparison of Mixed Models and Selective Sweep Detection
by Changyi Chen, Yu He, Juan Ke, Xiaoran Zhang, Junwen Fei, Boxing Sun, Hao Sun and Chunyan Bai
Vet. Sci. 2025, 12(7), 657; https://doi.org/10.3390/vetsci12070657 - 11 Jul 2025
Viewed by 208
Abstract
This study aimed to investigate population genetic differences related to reproductive traits between Duroc and Yorkshire (Dutch Large White) pigs using two approaches: linear mixed models that dissect additive and dominant effects, and selective sweep analysis. (1) Methods: Genome-wide single-nucleotide polymorphism (SNP) data [...] Read more.
This study aimed to investigate population genetic differences related to reproductive traits between Duroc and Yorkshire (Dutch Large White) pigs using two approaches: linear mixed models that dissect additive and dominant effects, and selective sweep analysis. (1) Methods: Genome-wide single-nucleotide polymorphism (SNP) data of 3917 Duroc and 3217 Yorkshire pigs were analyzed. The first principal component (PC1) was used as a simulated phenotype to capture population-level variance. Additive and dominant genetic effects were partitioned and evaluated by using the combination of the linear mixed models (LMM) and ADDO’s algorithm (LMM + ADDO). In parallel, selective sweep signals were detected using fixation index (FST) and nucleotide diversity (θπ) analyses. A comparative assessment was then conducted between the LMM + ADDO and the selective sweep analysis results. Significant loci were annotated using quantitative trait loci (QTL) databases and the Ensembl genome browser. (2) Results: There are 39040 SNPs retained after quality control. Using the LMM + ADDO framework with PC1 as a simulated phenotype, a total of 632 significant SNPs and 184 candidate genes were identified. Notably, 587 SNPs and 171 genes were uniquely detected by the LMM + ADDO method and not among loci detected by the top 5% of FST and θπ values. Key candidate genes associated with litter size included HSPG2, KAT6B, SAMD8, and LRMDA, while DLGAP1, MYOM1, and VTI1A were associated with teat number traits. (3) Conclusions: This study demonstrates the power of integrating additive and dominant effect modeling with population genetics approaches for the detection of genomic regions under selection. The findings provide novel insights into the genetic architecture of reproductive traits in pigs and have practical implications for understanding the inheritance of complex traits. Full article
(This article belongs to the Special Issue Future Perspectives in Pig Reproductive Biotechnology)
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20 pages, 5499 KiB  
Article
Characterization of Acoustic Source Signal Response in Oxidized Autocombusted Coal Temperature Inversion Experiments
by Jun Guo, Wenjing Gao, Yin Liu, Guobin Cai and Kaixuan Wang
Fire 2025, 8(7), 264; https://doi.org/10.3390/fire8070264 - 3 Jul 2025
Viewed by 516
Abstract
The measurement error of sound travel time, one of the most critical parameters in acoustic temperature measurement, is significantly affected by the type of sound source signal. In order to select more appropriate sound source signals, a sound source signal preference study of [...] Read more.
The measurement error of sound travel time, one of the most critical parameters in acoustic temperature measurement, is significantly affected by the type of sound source signal. In order to select more appropriate sound source signals, a sound source signal preference study of loose coal acoustic temperature measurement was performed and is described herein. The results showed that the absolute error of the swept signal and the pseudo-random signal both increased with increased acoustic wave propagation distance. The relative error of the swept signal showed a relatively stable upward trend; in comparison, the pseudo-random signal showed a general decrease with a large fluctuation in the middle section, and both the relative and absolute errors for the pseudo-random signal were larger than those of the swept signal. Therefore, the swept signal is expected to perform better than the pseudo-random signal in the loose coal medium. Based on the experimental results, the linear sweep signal was selected as the sound source signal for the loose coal temperature inversion experiments: the average error between the inverted temperature value and the actual value was 4.86%, the maximum temperature difference was 2.926 °C, and the average temperature difference was 1.5949 °C. Full article
(This article belongs to the Special Issue Coal Fires and Their Impact on the Environment)
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11 pages, 268 KiB  
Article
Fixation Time for Competing Beneficial Mutations and Their Genomic Footprint
by Wolfgang Stephan
Biology 2025, 14(7), 775; https://doi.org/10.3390/biology14070775 - 27 Jun 2025
Viewed by 234
Abstract
For a highly beneficial mutation A at locus 1 spreading in a very large population, we have analyzed the scenario that at a closely linked locus 2 a second beneficial mutant B arises before A has fixed. Under the assumptions that the fitness [...] Read more.
For a highly beneficial mutation A at locus 1 spreading in a very large population, we have analyzed the scenario that at a closely linked locus 2 a second beneficial mutant B arises before A has fixed. Under the assumptions that the fitness of B is greater than that of A and that A- and B-carrying chromosomes can recombine at some rate r, recombinants AB may form and eventually fix. We present explicit formulas for the fixation time of AB under additive fitness of the mutants as a function of the frequency X20  of A at the time when B is introduced. Our analysis suggests that the effect of interference between the beneficial mutations is most pronounced for small values of X20<0.1. Furthermore, we identify a threshold value for r, above which recombination speeds up fixation. Using published simulation data, we also describe the genomic footprint of competing beneficial mutations. At neutral sites between the two linked selected loci, an excess of intermediate-frequency variants may occur when interference is strong, i.e., X20 small. Finally, we discuss under which circumstances this scenario may be encountered in real sequences from recombining genomic regions. Full article
(This article belongs to the Section Theoretical Biology and Biomathematics)
13 pages, 2702 KiB  
Article
Host-Adaptive Divergence Shapes the Genetic Architecture of Magnaporthe oryzae in Southern China’s Rice Agroecosystems
by Xin Liu, Jun Fu, Zhao Deng, Xinwei Chen, Xiaochun Hu, Zhouyi Tu, Qiuyi Wang, Yuxuan Zhu, Pengcheng Chen, Zhenan Bai, Tiangang Liu, Xuanwen Zhang, Peng Qin, Kai Wang, Nan Jiang and Yuanzhu Yang
J. Fungi 2025, 11(7), 485; https://doi.org/10.3390/jof11070485 - 26 Jun 2025
Viewed by 275
Abstract
Rice blast disease, caused by the ascomycete fungus Magnaporthe oryzae (syn. Pyricularia oryzae), poses a severe threat to global rice production. Southern China, a major rice-growing region characterized by diverse agroecological conditions, faces substantial challenges from blast disease, yet our understanding of [...] Read more.
Rice blast disease, caused by the ascomycete fungus Magnaporthe oryzae (syn. Pyricularia oryzae), poses a severe threat to global rice production. Southern China, a major rice-growing region characterized by diverse agroecological conditions, faces substantial challenges from blast disease, yet our understanding of the genetic structure of M. oryzae populations in this region remains limited. Here, we analyzed 885 M. oryzae strains from 18 nurseries across four rice ecological regions in Southern China using a panel of genome-wide SNP markers. Phylogenetic and principal component analyses revealed three distinct clonal lineages: lineage I (58.19%), lineage II (21.36%), and lineage III (20.45%). Lineage I exhibited a broader geographic distribution compared to the other two lineages. Host-adapted divergence was observed across rice subspecies, with lineage III predominantly associated with japonica growing-regions, while lineages I and II mainly colonized indica rice-growing regions. Genetic diversity exhibited significant spatial heterogeneity, with the nucleotide diversity (π) ranging from 0.17 in South China to 0.32 in the Middle–Lower Yangtze River region, reflecting differential cropping systems. The predominantly negative Tajima’s D values across populations suggested recent expansion or selective sweeps, likely driven by host resistance pressures. High genetic differentiation between lineage I and other lineages contrasted with low divergence between lineages II and III, indicating distinct evolutionary trajectories. Furthermore, an uneven distribution of mating types among three genetic lineages was observed, suggesting limited sexual recombination within clonal lineages. The information obtained in this study may be beneficial in devising suitable strategies to control rice blast disease in Southern China. Full article
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17 pages, 2493 KiB  
Article
Comparative Evaluation of Xanthan Gum, Guar Gum, and Scleroglucan Solutions for Mobility Control: Rheological Behavior, In-Situ Viscosity, and Injectivity in Porous Media
by Jose Maria Herrera Saravia and Rosangela Barros Zanoni Lopes Moreno
Polymers 2025, 17(13), 1742; https://doi.org/10.3390/polym17131742 - 23 Jun 2025
Viewed by 281
Abstract
Water injection is the most widely used secondary recovery method, but its low viscosity limits sweep efficiency in heterogeneous carbonate reservoirs, especially when displacing heavy crude oils. Polymer flooding overcomes this by increasing the viscosity of the injected fluid and improving the mobility [...] Read more.
Water injection is the most widely used secondary recovery method, but its low viscosity limits sweep efficiency in heterogeneous carbonate reservoirs, especially when displacing heavy crude oils. Polymer flooding overcomes this by increasing the viscosity of the injected fluid and improving the mobility ratio. In this work, we compare three biopolymers (i.e., Xanthan Gum, Scleroglucan, and Guar Gum) using a core flood test on Indiana Limestone with 16–19% porosity and 180–220 mD permeability at 60 °C and 30,905 mg/L of salinity. We injected solutions at 100–1500 ppm and 0.5–6 cm3/min to measure the Resistance Factor (RF), Residual Resistance Factor (RRF), in situ viscosity, and relative injectivity. All polymers behaved as pseudoplastic fluids with no shear thickening. The RF rose from ~1.1 in the dilute regime to 5–16 in the semi-dilute regime, and the RRF spanned 1.2–5.8, indicating moderate, reversible permeability impairment. In-site viscosity reached up to eight times that of brine, while relative injectivity remained 0.5. Xanthan Gum delivered the highest viscosity boost and strongest shear thinning, Scleroglucan offered a balance of stable viscosity and a moderate RF, and Guar Gum gave predictable but lower viscosity enhancement. These results establish practical guidelines for selecting polymer types, concentration, and flow rate in reservoir-condition polymer flood designs. Full article
(This article belongs to the Section Polymer Applications)
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11 pages, 2009 KiB  
Article
Different Approaches to Extracting Proximally Migrated or Broken and Retained Pancreatic Stents
by Navkiran Randhawa, Ahamed Khalyfa, Raahi Patel, Rahil Desai, Mahnoor Inamullah, Haoran Peng, Varshita Goduguchinta, Subbaramiah Sridhar and Kamran Ayub
J. Clin. Med. 2025, 14(12), 4298; https://doi.org/10.3390/jcm14124298 - 17 Jun 2025
Viewed by 405
Abstract
Background: Pancreatic stents (PSs) play a crucial role in the management of pancreatic duct obstructions, particularly in the context of endoscopic retrograde cholangiopancreatography (ERCP). However, stent migration remains a significant complication, leading to risks such as pancreatitis, pancreatic duct stenosis, and abscess formation. [...] Read more.
Background: Pancreatic stents (PSs) play a crucial role in the management of pancreatic duct obstructions, particularly in the context of endoscopic retrograde cholangiopancreatography (ERCP). However, stent migration remains a significant complication, leading to risks such as pancreatitis, pancreatic duct stenosis, and abscess formation. This study aims to evaluate the efficacy of various endoscopic techniques for retrieving proximally migrated or broken pancreatic stents, highlighting optimal strategies for improving patient outcomes. Methods: A retrospective multicenter review was conducted across six hospitals from 2016 to 2024. Patients with proximally migrated or broken pancreatic stents referred for endoscopic retrieval after failed attempts at other facilities were included. Demographic data, stent characteristics, and retrieval techniques were analyzed. Endoscopic methods included SpyGlass forceps, SpyGlass baskets, Soehendra retriever stents, balloon sweeps, flower baskets, and extension pancreatic sphincterotomy. Procedural success, retrieval times, and post-procedural outcomes were assessed. Results: Twelve patients underwent endoscopic retrieval, including two with broken stents. All procedures were successful, with retrieval times averaging 30 to 45 min. Two patients developed pancreatic duct narrowing, requiring balloon dilation. All patients had new stents placed to maintain duct patency, and no major complications were observed. Follow-up evaluations confirmed complete resolution of migration-related issues, with all stents removed. Conclusions: Endoscopic retrieval of migrated pancreatic stents is highly effective, with specialized techniques ensuring a 100% success rate in this study. Early intervention and the selection of appropriate retrieval methods are critical in minimizing complications. Further research is needed to refine retrieval strategies and standardize protocols to enhance clinical outcomes. Full article
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29 pages, 1944 KiB  
Article
Insect Abundance and Richness in Squash Agroecosystems of Georgia, United States: The Role of Cultivar Selection and Weather Conditions
by Sanower Warsi, Yinping Li, George N. Mbata and Alvin M. Simmons
Agronomy 2025, 15(6), 1411; https://doi.org/10.3390/agronomy15061411 - 8 Jun 2025
Viewed by 664
Abstract
This study investigated the abundance and richness of insect pests and beneficial insects on 20 squash cultivars across three seasons in middle Georgia, U.S. Insects were sampled using yellow sticky cards, pan traps and sweep nets. Bemisia tabaci Gennadius (sweet potato whitefly) was [...] Read more.
This study investigated the abundance and richness of insect pests and beneficial insects on 20 squash cultivars across three seasons in middle Georgia, U.S. Insects were sampled using yellow sticky cards, pan traps and sweep nets. Bemisia tabaci Gennadius (sweet potato whitefly) was prevalent in all seasons, while other key pests showed distinct seasonal peaks. Diaphania hyalinata Linnaeus (melonworm) peaked mid-July in summer 2021 (21 June–1 August), while Thysanoptera species, Acalymma vittatum Fabricius (striped cucumber beetle), and Diabrotica balteata LeConte (banded cucumber beetle) peaked late July-early August. In fall 2021 (4 October–14 November), Epilachna borealis (squash beetle), D. hyalinata, and D. nitidalis Stoll (pickleworm) were more active in early to mid-October, whereas D. undecimpunctata howardi Barber (spotted cucumber beetle) peaked in late November. In fall 2022 (17 October–20 November), D. balteata and D. undecimpunctata howardi peaked mid October to early November, while Anasa tristis DeGeer (squash bug) peaked in mid–late November. Orius insidiosus Say (minute pirate bug) peaked in late summer 2021 and remained stable in fall 2021. Pollinators were most active in mid-fall. Cultivars influenced insect abundance. ‘Saffron’ and ‘Amberpic 8455’ harbored the most O. insidiosus and fewer D. balteata and Thysanoptera species. ‘Golden Goose Hybrid’ had the highest moth numbers. These patterns suggest that cultivar traits influenced pest susceptibility and beneficial arthropods’ activity. Temperature and relative humidity were positively correlated with A. vittatum and E. borealis numbers, but rainfall negatively affected bees. These findings underscore the importance of cultivar selection and weather condition considerations in integrated pest management. Full article
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23 pages, 5125 KiB  
Article
Development of a Water-Sensitive Self-Thickening Emulsion Temporary Plugging Diverting Agent for High-Temperature and High-Salinity Reservoirs
by Chong Liang, Ning Qi, Liqiang Zhao, Xuesong Li and Zhenliang Li
Polymers 2025, 17(11), 1543; https://doi.org/10.3390/polym17111543 - 1 Jun 2025
Viewed by 490
Abstract
In oil and gas production, reservoir heterogeneity causes plugging removal fluids to preferentially enter high-permeability zones, hindering effective production enhancement in low-permeability reservoirs. Traditional chemical diverting agents exhibit insufficient stability in high-temperature, high-salinity environments, risking secondary damage. To address these challenges, this study [...] Read more.
In oil and gas production, reservoir heterogeneity causes plugging removal fluids to preferentially enter high-permeability zones, hindering effective production enhancement in low-permeability reservoirs. Traditional chemical diverting agents exhibit insufficient stability in high-temperature, high-salinity environments, risking secondary damage. To address these challenges, this study developed a water-sensitive self-thickening emulsion, targeting improved high-temperature stability, selective plugging, and easy flowback performance. Formulation optimization was achieved via orthogonal experiments and oil–water ratio adjustment, combined with particle size regulation and viscosity characterization. Core plugging experiments demonstrated the new emulsion system’s applicability and diverting effects. Results showed that under 150 °C and 15 × 104 mg/L NaCl, the emulsion maintained a stable viscosity of above 302.7 mPa·s, with particle size D50 increasing from 31.1 μm to 71.2 μm, exceeding API RP 13A’s 100 mPa·s threshold for acidizing diverters, providing an efficient plugging solution for high-temperature, high-salinity reservoirs. The injection pressure difference in high-permeability cores stabilized at 2.1 MPa, significantly enhancing waterflood sweep efficiency. The self-thickening mechanism, driven by salt-induced droplet coalescence, enables selective plugging in heterogeneous formations, as validated by core flooding tests showing a 40% higher pressure differential in high-permeability zones compared to conventional systems. Full article
(This article belongs to the Section Polymer Applications)
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16 pages, 13118 KiB  
Article
Global Whole-Genome Resequencing of Beef Cattle Reveals Characteristic Traits Related Genes in Pinan Cattle
by Dongdong Bo, Yuanyuan Wang, Yilin Bai, Jing Li, Jiameng Shen, Jinxiao Wei and Yueyu Bai
Animals 2025, 15(11), 1626; https://doi.org/10.3390/ani15111626 - 31 May 2025
Viewed by 445
Abstract
Beef cattle breed improvement holds strategic significance in the livestock industry. Pinan cattle, developed through years of selective breeding in Xinye County, Henan Province, exhibit superior traits including thin skin, fine bone structure, rapid growth, high dressing percentage, excellent meat yield, and superior [...] Read more.
Beef cattle breed improvement holds strategic significance in the livestock industry. Pinan cattle, developed through years of selective breeding in Xinye County, Henan Province, exhibit superior traits including thin skin, fine bone structure, rapid growth, high dressing percentage, excellent meat yield, and superior feed efficiency. However, research on the genetic characteristics of Pinan cattle remains in its infancy. In this study, we investigated population genetic diversity and positive selection signals in Pinang cattle based on whole-genome resequencing data. Using a selective sweep approach, we identified 98 candidate genes associated with growth, reproduction, and immunity, along with 13 high-confidence missense mutations, which may underlie key traits in this population. Based on the critical roles of the NDN and PARVA genes in reproduction and muscle development, the predominant T allele at the NDN c.581T > A and PARVA c.893T > A loci in the Pinan cattle population may partially explain their advantages in sexual precocity and rapid growth compared to other breeds or populations. This study provides an important theoretical basis for the genetic improvement of native beef cattle and lays a scientific foundation for further investigation into the growth and development mechanisms of Pinan cattle. Full article
(This article belongs to the Section Cattle)
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16 pages, 3830 KiB  
Article
Identification of Genomic Variants and Candidate Genes for Reproductive Traits and Growth Traits in Pishan Red Sheep Using Whole-Genome Resequencing
by Maimaitijiang Muhetapa, Mengting Zhu, Aladaer Qi and Sulaiman Yiming
Biology 2025, 14(6), 636; https://doi.org/10.3390/biology14060636 - 30 May 2025
Viewed by 469
Abstract
Sheep have evolved remarkable phenotypic diversity through artificial and natural selection, with reproductive traits being pivotal for breeding economics. As a unique genetic resource, Pishan red sheep exhibit exceptional advantages, including perennial estrus, high fecundity, and stable hereditary characteristics, establishing them as an [...] Read more.
Sheep have evolved remarkable phenotypic diversity through artificial and natural selection, with reproductive traits being pivotal for breeding economics. As a unique genetic resource, Pishan red sheep exhibit exceptional advantages, including perennial estrus, high fecundity, and stable hereditary characteristics, establishing them as an optimal model for investigating reproductive genetics. In this study, we performed whole-genome resequencing of Pishan red sheep, generating 9084.81 Gb of raw data and identifying 53,968,686 high-quality single-nucleotide polymorphisms (SNPs). Through selective sweep analysis, 92 genomic regions under selection were detected, containing 90 positional candidate genes significantly associated with growth, reproduction, and immune functions. Notably, we revealed BMPRIB, UNC5C, PDLIM5, GRID2, and HPGDS as core positional candidate genes influencing litter size, operating through the TGF-beta and Thyroid hormone signaling pathways. A genome-wide association study (GWAS) further identified 59 trait-related SNPs, including 39 loci linked to growth traits (affecting positional candidate genes such as PROM1, TAPT1, LDB2, and KIF16B) and 20 loci of positional candidate genes associated with reproductive traits (involving ASPA, RAP1GAP2, PHIP, and WDR82).These findings not only elucidate the molecular basis of superior reproductive performance in Pishan red sheep, but also provide functional markers for precision breeding. Full article
(This article belongs to the Special Issue Reproductive Physiology and Pathology in Livestock)
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19 pages, 2882 KiB  
Article
Population Genomics and Application for Growth Improvement of Domesticated Asian Seabass Lates calcarifer from Thailand
by Bavornlak Khamnamtong, Atra Chaimongkol, Sirikan Prasertlux, Sirithorn Janpoom, Jutaporn Chaimongkol, Sureerat Tang, Wanwipa Ittarat, Putth Songsangjinda, Takashi Sakamoto, Panya Sae-Lim and Sirawut Klinbunga
Diversity 2025, 17(6), 383; https://doi.org/10.3390/d17060383 - 29 May 2025
Viewed by 417
Abstract
A breeding program of Asian seabass (Lates calcarifer, also called barramundi) was established for sustainable aquaculture in Thailand. Estimated breeding values (EBVs) for growth of the base population (G0, 51 families, N = 1655) were evaluated. Fish exhibited either high (HEBV, [...] Read more.
A breeding program of Asian seabass (Lates calcarifer, also called barramundi) was established for sustainable aquaculture in Thailand. Estimated breeding values (EBVs) for growth of the base population (G0, 51 families, N = 1655) were evaluated. Fish exhibited either high (HEBV, averaged body weight = 1036.80 ± 250.80 g, N = 133) or low (LEBV, averaged body weight = 294.50 ± 167.20 g, N = 147) growth EBVs, and their parental fish (N = 26) were analyzed by Specific Locus Amplified Fragment Sequencing (SLAF-Seq). An average of 159,769 SLAF tags/sample was generated, covering 13.79-fold of the genome size, and 225,498 SNPs were applied for population genomics. Observed (Ho) and expected (He) heterozygosity values were 0.224 and 0.308, 0.178 and 0.246, and 0.184 and 0.305, respectively. Polymorphic information content (PIC) ranged from 0.205–0.251. A selective sweep was performed based on Fst, and nucleotide polymorphism (π) revealed significant differences between allelic contents of growth- and immune-related genes in HEBV and LEBV populations. Kinship analysis revealed that 84.38% of examined fish showed r values < 0.2, and population admixture analysis revealed three subpopulations in HEBV and four subpopulations in LEBV groups. Fish that possessed a single cluster were found in each subgroup of both populations, along with those exhibiting mixed ancestral clusters. This information is critically important for further applications in our ongoing seabass improvement breeding program. Full article
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16 pages, 4519 KiB  
Article
Genomic Diversity and Selection Signatures for Zaosheng Cattle
by Jianfeng Xu, Yanyan Wang, Fuyue Shi, Hailong Guo, Bo Gao, Junxiang Yang, Lingrong Gu, Dezhi Yang, Fengtao Zhang, Dengwei Gao, Ziyue Gao, Shengming Wang and Jin Wang
Biology 2025, 14(6), 623; https://doi.org/10.3390/biology14060623 - 28 May 2025
Viewed by 356
Abstract
The majority of native cattle in the central region of China are taurine × indicine cattle with diverse phenotypes. Zaosheng cattle, a native Chinese breed from Gansu Province, exhibit excellent meat quality and good adaptability. This cattle breed is still in the development [...] Read more.
The majority of native cattle in the central region of China are taurine × indicine cattle with diverse phenotypes. Zaosheng cattle, a native Chinese breed from Gansu Province, exhibit excellent meat quality and good adaptability. This cattle breed is still in the development phase from a drought type to a beef breed. To further study Zaosheng cattle, we used whole-genome sequencing data from 19 Zaosheng cattle samples and 91 published samples to understand their genetic diversity, population structure, and environmental adaptation. We provided a comprehensive overview of the sequence variation to explore the genetic changes in Zaosheng cattle due to environmental adaptation. According to genetic composition analysis, this study demonstrated that Zaosheng cattle are derived primarily from East Asian indicine cattle and East Asian cattle; specifically, Zaosheng and Qinchuan cattle are the most genetically similar. Through ancestral fragment inference and selective sweep analysis, we identified several genes linked to lipid metabolism, immune regulation, fertility, and meat quality across the mosaic genome of Zaosheng cattle, revealing numerous indicators of taurine or indicine ancestry. In summary, this study provides essential genetic insights into the genome diversity of Zaosheng cattle, while establishing a foundation for conserving their genetic resources and improving crossbreeding. Full article
(This article belongs to the Section Genetics and Genomics)
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16 pages, 1863 KiB  
Article
Parameter-Matching Multi-Objective Optimization for Diesel Engine Torsional Dampers
by Zhongxu Tian and Zhongda Ge
Appl. Sci. 2025, 15(10), 5639; https://doi.org/10.3390/app15105639 - 18 May 2025
Viewed by 429
Abstract
Torsional vibration dampers effectively mitigate torsional oscillations and additional stresses in diesel engine crankshaft systems, ensuring operational safety and reliability. Traditional damper selection principles, grounded in dual-pendulum dynamic models, focus on minimizing maximum torsional angles but fail to accurately characterize vibration behaviors in [...] Read more.
Torsional vibration dampers effectively mitigate torsional oscillations and additional stresses in diesel engine crankshaft systems, ensuring operational safety and reliability. Traditional damper selection principles, grounded in dual-pendulum dynamic models, focus on minimizing maximum torsional angles but fail to accurately characterize vibration behaviors in multi-cylinder engines. This study addresses this limitation by investigating dynamic modeling and numerical methods for an eight-cylinder diesel crankshaft system. A torsional vibration model was developed using Cholesky decomposition and the Jacobi sweep method for free vibration analysis, followed by dynamic response calculations through model decoupling and modal superposition. Parameter optimization of the damper was achieved via the NSGA-II multi-objective algorithm combined with a Bayesian-hyperparameter-optimized BP neural network. The results show that high-inertia-ratio dampers effectively suppress vibration and stress, while low-inertia-ratio configurations require approximately 20% elevated tuning ratios beyond theoretical parameters to achieve an additional 5% stress reduction, albeit with amplified torsional oscillations. Additionally, the study critically evaluates the numerical reliability of conventional dual-pendulum-based tuning ratio selection methods. This integrated approach enhances the precision of damper parameter matching for multi-cylinder engine applications. Full article
(This article belongs to the Section Acoustics and Vibrations)
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12 pages, 2533 KiB  
Article
Genome-Wide Analysis of Copy Number Variations in Three Populations of Nanyang Cattle Using Whole-Genome Resequencing
by Dong Dang, Lilian Zhang, Lutao Gao, Lin Peng, Yao Rao and Linnan Yang
Genes 2025, 16(5), 568; https://doi.org/10.3390/genes16050568 - 12 May 2025
Viewed by 552
Abstract
Copy number variation (CNV) serves as a crucial contributor to genetic diversity, exerting a profound influence on phenotypic diversity, traits of economic significance, and the evolutionary trajectory of livestock species. This study aimed to dissect the genome-wide CNV landscape of the Nanyang cattle [...] Read more.
Copy number variation (CNV) serves as a crucial contributor to genetic diversity, exerting a profound influence on phenotypic diversity, traits of economic significance, and the evolutionary trajectory of livestock species. This study aimed to dissect the genome-wide CNV landscape of the Nanyang cattle line (Nanyang, Pinnan, and Xianan cattle) to identify functionally relevant CNVs associated with key economic traits and breed differentiation. In this study, 27 resequencing datasets were utilized to analyze the genome-wide distribution of CNVs in three breeds of Nanyang cattle (Nanyang cattle, Pinnan cattle, and Xianan cattle) based on the latest reference genome ARS-UCD2.0. This study identified a total of 97,564 CNVs, and after merging CNVs with overlapping genomic positions, we obtained 10,349 CNV regions (CNVRs), accounting for 1.48% of the reference genome. Functional enrichment analysis showed that CNVR genes were mainly involved in organ development, neural regulation, immune regulation, and metabolism. In addition, 131 CNVRs overlapped with 81 quantitative trait loci (QTLs), such as growth and carcass QTL, multiple birth QTL, tenderness score QTL, and antal follicle number QTL. Additionally, AOX1, KRT72, and ZBTB7C were found to overlap with body weight QTLs. Furthermore, a selective sweep analysis of CNVR revealed that numerous genes (KIF26A, SPINT4, OR5W1, etc.) exhibited divergent copy numbers between breeds. Conclusively, this study facilitates comprehension of the genetic characteristics of the Nanyang cattle line at the CNV level and furnishes valuable information for the advancement of the Nanyang cattle line breeding system. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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