Search Results (40)

The main purpose of this study is to set up a biogeochemistry model for the Ria de Aveiro ecosystem and evaluate the relative importance of the main parameters and the processes occurring at the interface between the water column and the upper layer of the bottom sediment. It addresses a gap in modeling the interactions between the biogeochemical status of the water column and the upper sediment layer in the Ria de Aveiro lagoon ecosystem. Traditional modeling studies treated the bottom sediment as a rigid boundary, ignoring significant biogeochemical interactions at the interface between the water column and the upper layer of the bottom sediment. Therefore, the model integrates, besides the main biogeochemical processes within the water column, those occurring at the upper benthic layer, focusing on nitrogen (N) and phosphorus (P) cycles. This approach aims to enhance the accuracy of model predictions and understanding of the Ria de Aveiro lagoon’s biogeochemical dynamics. The study will be focused on the following coupled state variables: TN/IN and TP/IP, for total and inorganic nitrogen (N) and total and inorganic phosphorus (P), respectively, where total stands for the sum of organic and inorganic components of those elements. The model was set up and validated for some water quality stations of the Ria de Aveiro. Analysis has identified key parameters influencing TN and TP, such as nitrification, denitrification rates, and oxygen penetration. TN was found sensitive to nitrate and ammonium diffusion coefficients, while TP was influenced by iron–phosphate interactions and phosphorus mineralization. Concerning the model validation, the results demonstrated that the RMSE and MAPE values for the main variables fall within an acceptable range, given the uncertainty related to data. The model was applied to assess the impact of the following physical forcing: river flow, water temperature, and salinity on N and P status of the water column. The results clearly demonstrate that bottom layer and water column interactions play an important role in the N and P status of the water column and contribute to the N and P concentration changes of the water. The influence of river flows alone led to contrasting behaviors among the lagoon stations, with significant increases in TP levels, which may be attributed to sediment release from the sediment layer. Nevertheless, the combination of high river flows and elevated nutrient levels at the river boundaries has led to significantly increased nitrogen (N) and phosphorus (P) levels, underscoring the influence of river flow on the interaction between bottom layer sediment and the water column. High water temperatures typically lead to an increase in total phosphorus (TP) levels, indicating a possible release from the sediment layer. Meanwhile, TN levels remained stable. Salinity changes had a minor impact compared to river flow and temperature. The study emphasizes the importance of understanding interactions between the water column and sediment, particularly in shallow intertidal areas. Overall, the inclusion of biogeochemical interactions between the benthic and pelagic layers represents progress in ecosystem modeling of the Ria de Aveiro. Full article

The Mazarrón 2 shipwreck was found in 1994 on the beach of Playa de la Isla (Mazarrón, Murcia, Spain). This finding is extremely important because the boat and its lead cargo were still in a reasonable conservation state and, therefore, provided new data on naval construction, commercial goods, navigation routes, and the relationships between the Phoenicians and the local population in the 7th–6th century BC. Currently, the shipwreck remains underwater, protected by a metallic coffer. In the last 2 years, a Preliminary Studies Project has been carried out, supported by national and regional public institutions. This research aims to know the shipwreck’s conservation state and to determine the extraction and conservation methods at the Museo Nacional de Arqueología Subacuática ARQVA (Cartagena, Spain), where the conservation and restoration treatment will be conducted. The sampling strategy and analytical study included not only wood and other materials from the shipwreck and its cargo but also the seawater and the seabed materials in the vicinity of the shipwreck. This paper presents the results of the geochemical study of the archeological site. The applied methodology included physico-chemical tests, X-ray diffraction, optical microscopy, FTIR spectroscopy, field-emission scanning electron microscopy coupled with X-ray microanalysis, and X-ray microscopy. The results indicated that, despite the wreck being buried at a shallow depth (less than 50 cm) in a marine environment with a water column of 2–2.5 m, influenced by complex coastal dynamics that favor an oxic environment, early diagenetic processes like the formation of pyrite framboids are particularly intense in the pores and internal channels of the wreck’s wood, where a different dysoxic–anoxic environment prevails. These processes have been the main mechanisms to have affected the wreck and are related to the biogeochemistry of sediments. The sediments have been confirmed to be closely related to the geological context of the Mazarrón region. The conducted study found no significant evidence of pollution due to the lead cargo. Full article

Bacterial diversity and its distribution characteristics in sediments are critical to understanding and revealing biogeochemical cycles in sediments. However, little is known about the relationship between biogeochemistry processes and vertical spatial distribution of bacterial communities in sandy sediments. In this study, we used fluorescence quantitative PCR, high-throughput sequencing technology and statistical analysis to explore the vertical distribution pattern of bacterial community diversity and its influencing factors in sandy sediments of the Yangtze River Basin. The aim is to enrich the understanding of the ecological characteristics and functions of bacteria in river ecosystems. The results showed that both sediment bacterial abundance and diversity showed a gradual decrease from surface to bottom in the vertical distribution. The main environmental factors that influenced the bacterial distribution pattern were pore water dissolved oxygen (DO), total nitrogen (TN) concentration and sediment nitrogen (N) content. The dominant bacterial species, Massilia and Flavobacterium, are suitable for growth and reproduction in high oxygen and nutrient-richer environments, while Limnobacter prefers low oxygen or anaerobic conditions. The vertical distribution pattern of bacteria and its influencing factors in river sandy sediment found in this study differ from the results in mud sediment, which may be related to the larger granular gap between sandy sediment and the lower content of organic matter. The findings of this study further our understanding of the distribution patterns and ecological preferences of microbial communities in river sediments, providing insights into how these communities may adapt to varying environmental conditions. Full article

Although mangrove forests occupy only 0.5% of the global coastal area, they account for 10–15% of coastal organic carbon (OC) storage, and 49–98% of OC is stored in sediments. The biogeochemistry of iron minerals and OC in marine sediments is closely related. To better reveal the role of iron minerals in OC preservation in mangrove sediments, an established dithionite–citrate–bicarbonate (DCB) extraction method was used to extract iron-bound OC (Fe-OC), and then the parameters of OC, Fe-OC, iron content, carbon isotopes, infrared spectroscopy, and XRD diffractions of sediments at a 1 m depth in four typical mangrove communities in the Gaoqiao Mangrove Reserve, Guangdong, China, were systematically measured. XRD diffractograms showed that the iron minerals in mangrove sediments may mainly exist in the form of goethite, which is consistent with the predominant types of iron minerals in marine sediments. About 10% of OC is directly bound to iron, and it is further estimated that about 2.4 × 10¹²–3.8 × 10¹² g OC is preserved in global mangrove forests each year based on the high burial rate of OC in mangrove sediments. Lower Fe-OC/OC molar ratios indicated that iron mainly binds to OC via adsorption mechanisms. More depleted δ¹³C_Fe-OC relative to δ13C_bulk indicated that iron minerals are mainly associated with terrigenous OM, and the infrared spectra also revealed that iron minerals preferentially bind to terrigenous aromatic carbon. This work supports the “giant rusty sponge” view, elucidating that iron plays an important role in the preservation of OC in mangrove sediments. Full article

Quantitative estimates of particle size in estuaries and shelf areas are important to understand ocean ecology and biogeochemistry. Particle size can be characterized qualitatively from satellite observations of ocean color. As a typical marginal sea, the Yellow River Delta (YRD) with the Bohai Sea experiences a complex hydrodynamic environment. Here, we attempt to quantify the particle size distribution (PSD) slope (ξ) based on its relationship with the particle backscattering exponent from Sentinel-3A/B OLCI. The PSD slope, ξ displays temporal and spatial variability in the YRD with the Bohai Sea. Its value varies between 3 and 4, and typically exceeds 5 in offshore areas. The lowest value of ξ occurs in the winter, indicating the presence of fine inorganic particles in the water, while high values are attained in the spring, when phytoplankton blooms increase the particle size. ξ decreases near the river mouth because of the large sediment-laden discharge debouching into the sea. We detected a slight increase in ξ when turbid waters were present in the period 2016–2022. Environmental factors, such as sea surface temperature, sea surface wave height, and wind, may control particle size and ξ in the long term. Inorganic suspended particle matter is derived along the YRD using the magnitude of ξ. The mean inorganic suspended particle matter area in winter approaches 23,900 km² when ξ < 4.6. This study thoroughly characterizes variations in ξ in the YRD with the Bohai Sea and clarifies the contributions of driving factors from human activities and climate change. Full article

Deep-sea hydrothermal vents have been extensively explored around the globe in the past decades, and the diversity of microbial communities and their ecological functions related to hydrothermal vents have become hotspots in the study of microbial biogeochemistry. However, knowledge of dominant microbial communities and their unique metabolic characteristics adapting to hydrothermal vents is still limited. In our study, the sediment sample near the Tangyin hydrothermal vent in the southern part of the Okinawa Trough was collected, and the most abundant phyla are Proteobacteria and Desulfobacterota based on the 16S rRNA genes and metagenome sequencing. Metagenomic analysis revealed that methane metabolism, sulfur reduction, and Fe²⁺ uptake were abundantly distributed in hydrothermal sediment. In addition, most of the metagenomic assembly genomes (MAGs), belonging to Chloroflexota, Desulfobacterota, and Gammaproteobacteria, were found to be involved in methanogenesis, sulfur oxidation/reduction, and ferrous/ferric iron metabolisms. Among these MAGs, the two representative groups (Bathyarchaeia and Thioglobaceae) also showed distinct metabolic characteristics related to carbon, sulfur, and iron to adapt to hydrothermal environments. Our results reveal the dominant microbial populations and their metabolic features in the sediment near the Tangyin hydrothermal fields, providing a better understanding of microbial survival strategies in the extreme environment. Full article

Plastic debris is a growing threat in freshwater ecosystems and transport models predict that many plastics will sink to the benthos. Among the most common plastics found in the Laurentian Great Lakes sediments are polyethylene terephthalate (especially fibers; PET), polyvinylchloride (particles; PVC), and styrene-butadiene rubber resulting from tire wear (“crumb rubber”; SBR). These materials vary substantially in physical and chemical properties, and their impacts on benthic biogeochemistry and microbial community structure and function are largely unknown. We used a microcosm approach to evaluate the impact of these three plastics on benthic-pelagic coupling, sediment properties, and sediment microbial community structure and function using sediments from Irondequoit Bay, a major embayment of Lake Ontario in Rochester, New York, USA. Benthic metabolism and nitrogen and phosphorous cycling were all uniquely impacted by the different polymers. PET fibers and PVC particles demonstrated the most unique effects, with decreased ecosystem metabolism in sediments containing PET and greater nutrient uptake in sediments with PVC. Microbial diversity was reduced in all treatments containing plastic, but SBR had the most substantial impact on microbial community function, increasing the relative importance of metabolic pathways such as hydrocarbon degradation and sulfur metabolism. Our results suggest that individual polymers have unique impacts on the benthos, with divergent implications for ecosystem function. This provides deeper insight into the myriad ways plastic pollution may impact aquatic ecosystems and will help to inform risk assessment and policy interventions by highlighting which materials pose the greatest risk. Full article

Four short sediment cores were collected to explore the impacts of bay scallop farming on the composition and accumulation of sedimentary organic matter (SOM). The results revealed that SOM was mainly composed of relatively easily biodegradable substances as evidenced by the high contribution rate of biopolymeric carbon (77.8–94.4%). The sediment accumulation rate in the scallop farming area (SFA) was 28.6% higher than that in the non-scallop farming area (NSFA). The total organic carbon (TOC) and total nitrogen (TN) burial fluxes in the SFA were 33.1 and 36.6% higher than those in the NSFA, respectively. A rough estimate showed that the burial fluxes of TOC, TN, scallop-derived OC, and marine algal-derived OC in the ~150 km² SFA could increase by 1.08, 0.11, 0.39, and 0.68 g m⁻² yr⁻¹, respectively, with annual scallop production increasing 10⁴ t. This study highlights the significant effects of scallop farming on the biogeochemistry of SOM in coastal waters, which provides a direct reference for future research on the carbon cycle in shellfish culture areas. Full article

This article presents geochemical, mineralogical and microbiological characteristics of five samples of modern bottom sediments in the littoral zone of the high-mountain salty lake Issyk-Kul. The 16S rRNA gene sequencing method shows that the microbial community consists of organic carbon degraders (representatives of phyla: Proteobacteria, Chloroflexi, Bacteroidota and Verrucomicrobiota and families Anaerolineaceae and Hungateiclostridiaceae), photosynthetic microorganisms (representatives of Chloroflexi, phototrophic Acidobacteria, purple sulphur bacteria Chromatiaceae and cyanobacteria) and bacteria of the reducing branches of the sulphur biogeochemical cycle (representatives of Desulfobacterota, Desulfosarcinaceae and Desulfocapsaceae). The participation of microorganisms in processes in the formation of a number of authigenic minerals (calcite, framboidal pyrite, barite and amorphous Si) is established. The high diversity of microbial communities indicates the presence of labile organic components involved in modern biogeochemical processes in sediments. The active destruction of organic matter begins at the water-sediment interface. Full article

The present study reviewed the carbon-biogeochemistry-related observations concerning CO₂ and CH₄ dynamics in the estuaries adjoining the Indian Sundarbans mangrove ecosystem. The review focused on the partial pressure of CO₂ and CH₄ [pCO_2(water) and pCH_4(water)] and air–water CO₂ and CH₄ fluxes and their physical, biogeochemical, and hydrological drivers. The riverine-freshwater-rich Hooghly estuary has always exhibited higher CO₂ emissions than the marine-water-dominated Sundarbans estuaries. The mangrove sediment porewater and recirculated groundwater were rich in pCO_2(water) and pCH_4(water), enhancing their load in the adjacent estuaries. Freshwater-seawater admixing, photosynthetically active radiation, primary productivity, and porewater/groundwater input were the principal factors that regulated pCO_2(water) and pCH_4(water) and their fluxes. Higher chlorophyll-a concentrations, indicating higher primary production, led to the furnishing of more organic substrates that underwent anaerobic degradation to produce CH₄ in the water column. The northern Bay of Bengal seawater had a high carbonate buffering capacity that reduced the pCO_2(water) and water-to-air CO₂ fluxes in the Sundarbans estuaries. Several authors traced the degradation of organic matter to DIC, mainly following the denitrification pathway (and pathways between aerobic respiration and carbonate dissolution). Overall, this review collated the significant findings on the carbon biogeochemistry of Sundarbans estuaries and discussed the areas that require attention in the future. Full article

In the semiarid coast of northeast Brazil, climate change and changes in land use in drainage basins affect river hydrodynamics and hydrochemistry, modifying the estuarine environment and its biogeochemistry and increasing the mobilization of mercury (Hg). This is particularly relevant to the largest semiarid-encroached basin of the region, the Jaguaribe River. Major Hg sources to the Jaguaribe estuary are solid waste disposal, sewage and shrimp farming, the latter emitting effluents directly into the estuary. Total annual emission reaches 300 kg. In that estuary, the distribution of Hg in sediment and suspended particulate matter decreases seaward, whereas dissolved Hg concentrations increase sharply seaward, suggesting higher mobilization at the marine-influenced, mangrove-dominated portion of the estuary, mostly in the dry season. Concentrations of Hg in rooted macrophytes respond to Hg concentrations in sediment, being higher in the fluvial endmember of the estuary, whereas in floating aquatic macrophytes, Hg concentrations followed dissolved Hg concentrations in water and were also higher in the dry season. Animals (fish and crustaceans) also showed higher concentrations and bioaccumulation in the marine-influenced portion of the estuary. The variability of Hg concentrations in plants and sediments agrees with continental sources of Hg. However, Hg fractionation in water and contents in the animals respond to higher Hg availability in the marine-dominated end of the estuary. The results suggest that the impact of anthropogenic sources on Hg bioavailability is modulated by regional and global environmental changes and results from a conjunction of biological, ecological and hydrological characteristics. Finally, increasing aridity due to global warming, observed in northeast Brazil, as well as in other semiarid littorals worldwide, in addition to increased water overuse, augment Hg bioavailability and environmental risk and exposure of the local biota and the tradition of human populations exploiting the estuary’s biological resources. Full article

Bioelectrochemical systems (BESs) have been extensively studied for treatment and remediation. However, BESs have the potential to be used for the enrichment of microorganisms that could replace their natural electron donor or acceptor for an electrode. In this study, Winogradsky BES columns with As-rich sediments extracted from an Andean watershed were used as a strategy to enrich lithotrophic electrochemically active microorganisms (EAMs) on electrodes (i.e., cathodes). After 15 months, Winogradsky BESs registered power densities up to 650 μWcm⁻². Scanning electron microscopy and linear sweep voltammetry confirmed microbial growth and electrochemical activity on cathodes. Pyrosequencing evidenced differences in bacterial composition between sediments from the field and cathodic biofilms. Six EAMs from genera Herbaspirillum, Ancylobacter, Rhodococcus, Methylobacterium, Sphingomonas, and Pseudomonas were isolated from cathodes using a lithoautotrophic As oxidizers culture medium. These results suggest that the tested Winogradsky BES columns result in an enrichment of electrochemically active As-oxidizing microorganisms. A bioelectrochemical boost of centenarian enrichment approaches, such as the Winogradsky column, represents a promising strategy for prospecting new EAMs linked with the biogeochemical cycles of different metals and metalloids. Full article

The impact of otter trawling on the relationship between functional traits of benthic invertebrates and specific biogeochemical processes were investigated in the oligotrophic Cretan Sea. The fishery is managed through a seasonal closure during the summer. During two seasons (winter and summer) replicate samples were taken from the field from a commercial trawl ground and an adjacent control area. Environmental parameters related to sediment biogeochemistry were measured including particulate organic carbon, sedimentary organic carbon, bottom water and sedimentary chlorophyll a and phaeopigment concentrations as well as benthic oxygen consumption. A significant impact of trawling was recorded only for bottom water chlorophyll and sedimentary organic carbon. Furthermore, the links between species traits and specific ecosystem processes were affected by trawling, highlighting the importance of unique functional modalities on ecosystem functioning. The traits that mostly influenced benthic biogeochemistry in the control sites were related to bioturbation and burrowing activities. In contrast, in the trawled sites, the associated traits were related to more opportunistic lifestyles and deposit feeding species that do not act as bioturbators. Thus, under trawling disturbance, this shift can decouple the species-sediment relations and affect nutrient cycling. Full article

Since rising temperature (T) will enhance biochemical reactions and coastal marine sediments are hotspots of carbon cycling, marine heatwaves’ (MHWs’) intensification caused by climate change will affect coastal biogeochemistry. We investigated the effects of MHWs on sediment organic matter (OM) in a nearshore locality (NW Sardinia, Mediterranean Sea) receiving an artificial warm water plume generating T anomalies of 1.5–5.0 °C. Sediments were collected before and after 3 and 11 weeks from the initial plume release. Both MHWs influenced sedimentary OM quantity, composition, and degradation rates, with major effects associated with the highest T anomaly after 3 weeks. Both MHWs enhanced sedimentary OM contents, with larger effects associated with the highest T anomaly. Phytopigment contents increased in the short term but dropped to initial levels after 11 weeks, suggesting the occurrence of thermal adaptation or stress of microphytobenthos. In the longer term we observed a decrease in the nutritional quality of OM and a slowdown of its turnover mediated by extracellular enzymes, suggestive of a decreased ecosystem functioning. We anticipate that intensification of MHWs will affect benthic communities not only through direct effects on species tolerance but also by altering benthic biogeochemistry and the efficiency of energy transfer towards higher trophic levels. Full article

The Arctic is greatly affected by climate change. Increasing air temperatures drive permafrost thaw and an increase in coastal erosion and river discharge. This results in a greater input of sediment and organic matter into nearshore waters, impacting ecosystems by reducing light transmission through the water column and altering biogeochemistry. This potentially results in impacts on the subsistence economy of local people as well as the climate due to the transformation of suspended organic matter into greenhouse gases. Even though the impacts of increased suspended sediment concentrations and turbidity in the Arctic nearshore zone are well-studied, the mechanisms underpinning this increase are largely unknown. Wave energy and tides drive the level of turbidity in the temperate and tropical parts of the world, and this is generally assumed to also be the case in the Arctic. However, the tidal range is considerably lower in the Arctic, and processes related to the occurrence of permafrost have the potential to greatly contribute to nearshore turbidity. In this study, we use high-resolution satellite imagery alongside in situ and ERA5 reanalysis data of ocean and climate variables in order to identify the drivers of nearshore turbidity, along with its seasonality in the nearshore waters of Herschel Island Qikiqtaruk, in the western Canadian Arctic. Nearshore turbidity correlates well to wind direction, wind speed, significant wave height, and wave period. Nearshore turbidity is superiorly correlated to wind speed at the Beaufort Shelf compared to in situ measurements at Herschel Island Qikiqtaruk, showing that nearshore turbidity, albeit being of limited spatial extent, is influenced by large-scale weather and ocean phenomenons. We show that, in contrast to the temperate and tropical ocean, freshly eroded material is the predominant driver of nearshore turbidity in the Arctic, rather than resuspension, which is caused by the vulnerability of permafrost coasts to thermo-erosion. Full article