Search Results (67)

Background/Objectives: The experience sampling method (ESM) is a structured data collection method in which participants respond to randomly timed acoustic alerts while engaging in their daily activities. It allows patients to assess their mood, context and pain levels. This study aimed to evaluate the opinions of patients who underwent surgery on the perioperative use of a digital ESM tool. Methods: The Psymate app version 1.6.15 (ESM device) generated 10 short reports (acoustic alerts) at semi-random times each day for patients who underwent total knee arthroplasty (TKA). The short report, consisting of 23 items, contained questions about mood, context and pain. At the end of the study, patients’ opinions about the app were collected through a standardized questionnaire covering multiple subtopics. Feedback was analyzed using descriptive statistics. Results: Of the 40 patients scheduled for TKA, 31 participated in the evaluation. The app received an average user-friendliness rating of 8.3 out of 10. Some patients express dissatisfaction with the frequency (n = 10) and noise (n = 14) of the notifications. Additional analyses suggest that higher pain levels may reduce the likelihood of completing the short report. Conclusions: This is the first study to evaluate postoperative patients’ opinions on the use of a digital ESM app. The PsyMate app received satisfactory ratings across all subtopics, although patients identified areas for improvement. Full article

The hybrid development of pumpkins, utilizing local genetic material, has recently garnered attention in India. This study aimed to evaluate the combining ability, heterosis, and per se performance of pumpkin hybrids for yield-related and biochemical traits. In the present investigation, eight parental lines of pumpkins were hybridized using a half-diallel mating design, resulting in 28 F₁ hybrids (reciprocals not included). The produced F₁ hybrids, parental lines, and a commercial check were assessed in a randomized complete block design with three replications during the summers of 2023 and 2024. The results obtained in the study show that the best performers with the most desirable characteristics were P-7 for total soluble solid, dry matter content, and average fruit weight; P-3 for total carotenoids, number of seeds per fruit, and antioxidant activity; P-2 for yield per plant and flesh thickness; and P-8 for number of fruits per plant. The parent P-5 for fruit number, average fruit weight, and yield per plant; P-2 for flesh thickness and antioxidant activity; P-7 for TSS and dry matter content; P-1 for fruit number; and P-3 for total carotenoids were noted as the best general combiners in terms of the effects of the parental lines on general combining ability. Conversely, the crosses P-2 × P-5 for yield per plant and flesh thickness and P-1 × P-2 for DPPH activity were found to outperform better-parent heterosis and standard heterosis in terms of heterosis and the specific combining ability magnitude of the F₁ hybrids. Thus, the findings of this study reveal that these hybrids possess strong potential for commercial cultivation, contributing to the development of high-yielding and nutritionally superior pumpkin hybrids after being tested in various seasons and locations. Full article

Agroforestry systems are essential in sustainable land use in the face of the growing global food demand and climate change. The southern region of Bahia, Brazil, is one of the places in the world where the tree species is particularly in abundance, primarily in cocoa agroforestry systems, contributing to biodiversity conservation. Understanding their reproductive patterns is crucial for the survival and sustainability of these trees. This study dealt with Lecythis pisonis (Sapucaia) trees by applying microsatellite markers for mixed-mating mode and paternity analyses for pollen dispersal. In particular, it was found that Lecythis pisonis offspring are produced through outcrossing, as the case may be, while random crossings and no nearby tree fertilization are the remaining factors that play a crucial role in myriad genetic diversity inversions. This phenomenon was indicated by paternity in nine offspring, with full siblings being from the same parents. The average distance of pollen flow was 6 km, which is why the pollinator, the bee Xylocopa frontalis, has a flight range aligning with distance. These data show the influence of habitat fragmentation, the function of Cabruca, and the conservation strategy. Full article

To address the drawbacks of the traditional snake optimization method, such as a random population initialization, slow convergence speed, and low accuracy, an adaptive t-distribution mixed mutation snake optimization strategy is proposed. Initially, Tent-based chaotic mapping and the quasi-reverse learning approach are utilized to enhance the quality of the initial solution and the population initialization process of the original method. During the evolution stage, a novel adaptive t-distribution mixed mutation foraging strategy is introduced to substitute the original foraging stage method. This strategy perturbs and mutates at the optimal solution position to generate new solutions, thereby improving the algorithm’s ability to escape local optima. The mating mode in the evolution stage is replaced with an opposite-sex attraction mechanism, providing the algorithm with more opportunities for global exploration and exploitation. The improved snake optimization method accelerates convergence and improves accuracy while balancing the algorithm’s local and global exploitation capabilities. The experimental results demonstrate that the improved method outperforms other optimization methods, including the standard snake optimization technique, in terms of solution robustness and accuracy. Additionally, each improvement technique complements and amplifies the effects of the others. Full article

The kissing bug Rhodnius prolixus is a nocturnal species; however, its temporal mating patterns remain unexplored. Copulation lasts about fifty minutes, during which time the couple remains almost motionless. We hypothesized that R. prolixus copulates within shelters to reduce its vulnerability. To test this, we examined the spatial and temporal patterns of its copulation, as well as the potential endogenous regulation of its circadian rhythm, under three conditions: a light:dark cycle (L/D), constant light (L/L), and constant darkness (D/D). Over ten days, the number and the timing of copulation of pairs in arenas containing a shelter were video-recorded. Under the L/D cycle, the pairs mated mainly during daylight hours. This rhythm persisted under the D/D cycle, with a peak extending from the first half of the subjective day to the first half of the subjective night. No rhythm was observed under the L/L cycle. A greater proportion of mating occurred within the shelters during the L/D and L/L cycles, whereas its spatial distribution was random under the D/D cycle. Our results reveal an endogenously controlled circadian rhythm of mating behavior, with mating activity mainly occurring during daylight hours. Additionally, we showed that the pairs copulated inside the shelters. These results provide new insights into the reproductive behavior of R. prolixus. Full article

Background/Objectives: The increasing pressure from pathogens and parasites on Apis mellifera populations is resulting in significant colony losses. It is desirable to identify resistance-associated single-nucleotide polymorphisms (SNPs) and their variability for the purpose of breeding resilient honeybee lines. This study examined the genetic diversity of 13 SNPs previously studied for associations with various resistance-providing traits, including six linked to Varroa-specific hygiene, five linked to suppressed mite reproduction, one linked to immune response, and one linked to chalkbrood resistance. Methods: Genotyping was performed using a novel SNaPshot genotyping panel designed for this study. The sample pool consisted of 308 honeybee samples in total, covering all 77 administrative districts of the Czech Republic. Results: All examined loci were polymorphic. The frequency of positive alleles in our population is medium to low, depending on the specific SNP. An analysis of genotype frequencies revealed that most loci exhibited the Hardy–Weinberg equilibrium. A comparison of the allele and genotype frequencies of the same locus between samples from hives and samples from flowers revealed no significant differences. The genetic diversity, as indicated by the heterozygosity values, ranged from 0.05 to 0.50. The fixation index (F) was, on average, close to zero, indicating minimal influence of inbreeding or non-random mating on the genetic structure of the analyzed samples. Conclusions: The obtained results provide further insights into the genetic variation of SNPs associated with the immune response and resistance to pathogens in honeybee populations in the Czech Republic. This research provides a valuable foundation for future studies of honeybee diversity and breeding. Full article

Rhopalopsole sinensis Yang and Yang, 1993 is one of the most widely distributed stoneflies in southern China. In this study, the genetic structure of nine different geographical populations of R. sinensis was studied based on three datasets of the 18S, COI and ITS2 genes. The phylogenetic trees showed that there had been a great degree of genetic differentiation among its nine geographical populations, but the hypothesis of random mating did not support the formation of reproductive isolation among different geographical populations, indicating that R. sinensis did not form cryptic species. The establishment of the 18S gene and ITS2 gene supports the population of (Guangdong + Shaanxi + Sichuan + Guizhou + Fujian) as independent branches, while the population of (Anhui + Zhejiang + Hunan) is another branch. The establishment of COI gene tree supports (Shaanxi + Sichuan + Guizhou + Fujian) as one branch, while the other independent branch is composed of (Anhui + Zhejiang + Guangxi + Hunan + Guangdong) groups. The possible reasons for this situation based on geography and biology are discussed. Our results provide the first reference for the genetic differentiation in Chinese Rhopalopsole stoneflies. Full article

Montbeliarde dairy cattle were introduced in Ecuador with the aim of ameliorating the production performance of other cattle breeds. The aim was to analyze the reproductive performance, demographic structure, inbreeding, and genetic diversity of Montbeliarde cattle obtained by absorption crossing. Official pedigree records from the Ecuadorian Montbeliarde Association were used. The total population was divided into seven populations: (i) historical (all individuals), (ii) 1999–2003, (iii) 2004–2008, (iv) 2009–2013, (v) 2014–2018, (vi) 2019–2023 (current), and (vii) reference (individuals with known parents). Demographic structure variables analyzed: pedigree completeness index (PCI), number of equivalents (GEqu), complete (GCom) and maximum (GMax) generations, and generation interval (GI). Inbreeding-derived variables analyzed: inbreeding (F), inbreeding increment (ΔF), average relatedness (AR), co-ancestry (C), non-random mating (α), effective population size (Ne), and genetic conservation index (GCI). Gene origin probability/genetic diversity variables analyzed: number of founders (f), effective number of founders (fe) and ancestors (fa), number of equivalent genomes (fg), fe/fa and fg/fa ratio, and DG losses. The databases were analyzed by ENDOG, POPREP, and CPC software. PCI in the historical population compared to the current population decreased from 72.95 to 65.87% (sire/dam pathway), while the GI decreased from 7.17 to 3.08 years when the historical and current populations were compared. Dam reproductive efficiency increased over time. Moreover, F = ~1%, AR = 2.06%, ΔF = 0.22%, C = 1.03%, α = −0.0077, GCI = 3.12, and Ne = 58 values were obtained. Gene origin probability in the reference population was f = 439, fa = 37, fe = 71.64, fg = 23.43, and fg/fe = 0.33, showing a GD loss due to unequal contribution of founders (0.55%) and bottleneck and genetic drift (4.25%). In conclusion, the Ecuadorian Montbeliarde cattle population displayed a relatively low diversity and high genetic relationship. Inbreeding levels increased while Ne values decreased over time. The introduction of new purebred bloodlines could be important to minimize the inbreeding levels ensuring the long-term conservation of this breed and minimizing GD loss. Full article

A synthetic variety (SV) of maize may not become stable if the sample size representing each parental line ($m$) is small. This research aimed to evaluate the effect of $m$ on the inbreeding coefficient (IC) of the SV ($FSy{n}_L$) and on the stability of its genetic constitution. An SV formed by randomly mating $\mathcal{l}$ unrelated lines whose inbreeding coefficient is $F$ was considered, and a random sample was taken from the genotypic array of the progeny produced by selfing a parental line $A_1{A}_2 \left(GA\right)$ This sample was visualized as a set of $g$ groups of four plants whose genotypes are all four of the $GA$ and $e$ represented the number of plants that failed to form a group. The ICs of the selfings and those of the intragroup and intergroup crosses were calculated to derive the formula for $FSy{n}_L$ in terms of $m,g,e,\mathcal{l}$ and $F$. It was found that as $m$ grows, $FSy{n}_L$ tends to $(1+F)/2$. With $m=15$, $FSy{n}_L$ is practically stabilized and the probability of no genotype loss is 0.979. Moreover, the probability of losing $A_1$ or $A_2$ is practically equal to zero from $m=6$ onwards. However, the probability that their frequencies remain the same decreases as $m$ gets larger. Full article

The genetic characteristics of postintroduced Metasequoia glyptostroboides from three forest areas in Ningbo Forest Farm, China, were analyzed by using polymorphic SSR markers. High genetic diversity at the species level (N_a = 5.306, N_e = 3.411, I = 1.269, H_o = 0.604 and H_e = 0.640) was detected. No significant difference in diversity was observed between mother trees and seedlings, indicating random mating or the absence of a founder effect. The group with the highest diversity was Shangliang seedlings (SLGS). Inbreeding was detected in two groups (SLGM and LXS), possibly due to biased sampling and selective pressures on these groups. AMOVA disclosed most genetic variation within groups (88%), with moderate differentiation (F_st = 0.117) and some gene flow (N_m = 1.887) between groups. Population structure analysis classified the six groups into distinct units, highlighting the need for tailored conservation strategies. These findings inform conservation and management practices for the introduced M. glyptostroboides. Full article

This research focuses on biological systems with sexual reproduction in which female and male individuals coexist together, forming female–male couples with the purpose of procreation. The couples can originate new females and males according to a certain probability law. Consequently, in this type of biological systems, two biological phases are involved: a mating phase in which the couples are formed, and a reproduction phase in which the couples, independently of the others, originate new offspring of both sexes. Due to several environmental factors of a random nature, these phases usually develop over time in a non-predictable (random) environment, frequently influenced by the numbers of females and males in the population and by the number of couples participating in the reproduction phase. In order to investigate the probabilistic evolution of these biological systems, in previous papers, by using a methodology based on branching processes, we had introduced a new class of two-sex mathematical models. Some probabilistic properties and limiting results were then established. Additionally, under a non-parametric statistical framework, namely, not assuming to have known the functional form of the offspring law, estimates for the main parameters affecting the reproduction phase were determined. We now continue this research line focusing the attention on the estimation of such reproductive parameters under a parametric statistical setting. In fact, we consider offspring probability laws belonging to the family of bivariate power series distributions. This general family includes the main probability distributions used to describe the offspring dynamic in biological populations with sexual reproduction. Under this parametric context, we propose accurate estimates for the parameters involved in the reproduction phase. With the aim of assessing the quality of the proposed estimates, we also determined optimal credibility intervals. For these purposes, we apply the Bayesian estimation methodology. As an illustration of the methodology developed, we present a simulated study about the demographic dynamics of Labord’s chameleon populations, where a sensitivity analysis on the prior density is included. Full article

Population genetics describes evolutionary processes, focusing on the variation within and between species and the forces shaping this diversity. Evolution reflects information accumulated in genomes, enhancing organisms’ adaptation to their environment. In this paper, I propose a model that begins with the distribution of mating based on mutual fitness and progresses to viable adult genotype distribution. At each stage, the changes result in different measures of information. The evolutionary dynamics at each stage of the model correspond to certain aspects of interest, such as the type of mating, the distribution of genotypes in regard to mating, and the distribution of genotypes and haplotypes in the next generation. Changes to these distributions are caused by variations in fitness and result in Jeffrey’s divergence values other than zero. As an example, a model of hybrid sterility is developed of a biallelic locus, comparing the information indices associated with each stage of the evolutionary process. In conclusion, the informational perspective seems to facilitate the connection between cause and effect and allows the development of statistical tests to perform hypothesis testing against zero-information null models (random mating, no selection, etc.). The informational perspective could contribute to clarify, deepen, and expand the mathematical foundations of evolutionary theory. Full article

The major histocompatibility complex (MHC) consists of genes involved in immune response and molecular discrimination between self and non-self. MHC genes are the most polymorphic in vertebrates. The origin and maintenance of polymorphism in MHC genes in populations is still unresolved. Mechanisms such as sexual selection and heterozygote advantage have been suggested as explanations for this high variability. In this study, a farmed population of rainbow trout (Oncorhynchus mykiss) characterized by the presence of specific MHC class IIB gene haplotypes at a frequency higher (30%) than that expected from random matings was investigated. Therefore, it was hypothesized that disassortative matings occur with an adaptive advantage for females, resulting in improved reproductive performance when mated with individuals with similar MHC haplotypes. Genetic analyses of the breeders were performed to define the MHC haplotypes and to perform specific matings. The effect of mating was evaluated by analyzing the survival rate of the offspring at various stages of incubation until swim-up. The reproductive performance of the offspring derived from specimens with similar haplotypes showed a better survival trend during the first life stages and reduced malformations. The results obtained are in contrast with the heterozygous advantage theory, therefore it was hypothesized, as for other salmonid species, the presence of a positive selection towards locally adapted MHC genes that promotes reproduction between genetically similar individuals. Full article

Phytophthora infestans is the causal agent of late blight in potato. The occurrence of P. infestans with both A1 and A2 mating types in the field may result in sexual reproduction and the generation of recombinant strains. Such strains with new combinations of traits can be highly aggressive, resistant to fungicides, and can make the disease difficult to control in the field. Metalaxyl-resistant isolates are now more prevalent in potato fields. Understanding the genetic structure and rapid identification of mating types and metalaxyl response of P. infestans in the field is a prerequisite for effective late blight disease monitoring and management. Molecular and phenotypic assays involving molecular and phenotypic markers such as mating types and metalaxyl response are typically conducted separately in the studies of the genotypic and phenotypic diversity of P. infestans. As a result, there is a pressing need to reduce the experimental workload and more efficiently assess the aggressiveness of different strains. We think that employing genetic markers to not only estimate genotypic diversity but also to identify the mating type and fungicide response using machine learning techniques can guide and speed up the decision-making process in late blight disease management, especially when the mating type and metalaxyl resistance data are not available. This technique can also be applied to determine these phenotypic traits for dead isolates. In this study, over 600 P. infestans isolates from different populations—Estonia, Pskov region, and Poland—were classified for mating types and metalaxyl response using machine learning techniques based on simple sequence repeat (SSR) markers. For both traits, random forest and the support vector machine demonstrated good accuracy of over 70%, compared to the decision tree and artificial neural network models whose accuracy was lower. There were also associations (p < 0.05) between the traits and some of the alleles detected, but machine learning prediction techniques based on multilocus SSR genotypes offered better prediction accuracy. Full article

This comprehensive study on the Andalusian Black cattle breed reveals a substantial population decline, with the average herd size decreasing significantly from 305.54 to 88.28 animals per herd. This decline is primarily attributed to agricultural changes and the introduction of foreign meat-focused breeds. The male-to-female ratio shift is noteworthy, with more cows than bulls, impacting selection intensity for both genders. Inbreeding levels, though relatively low historically (5.94%) and currently (7.23%), raise concerns as 37.08% historically and 48.82% currently of the animals exhibit inbreeding. Positive assortative mating is evident, reflected by the increasing non-random mating coefficient (α). Key ancestors play a crucial role in shaping genetic diversity, with one ancestor significantly influencing the current genetic pool and the top 10 ancestors contributing substantially. Breed maintains a conservation index of 2.75, indicating relatively high genetic diversity. Recent conservation efforts have led to an increase in registered animals. The Cañadas Reales, historical transhumance routes, may have contributed to genetic connections among provinces. Challenges include the historical bottleneck, demographic changes, and potential impacts from reproductive practices. The Andalusian Black breed’s conservation necessitates ongoing efforts in genealogical registration, targeted breeding programs, and collaborative initiatives to address the observed demographic shifts and ensure sustainable genetic diversity. Full article