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Search Results (249)

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18 pages, 3229 KiB  
Article
AMPK-Targeting Effects of (−)-Epicatechin Gallate from Hibiscus sabdariffa Linne Leaves on Dual Modulation of Hepatic Lipid Accumulation and Glycogen Synthesis in an In Vitro Oleic Acid Model
by Hui-Hsuan Lin, Pei-Tzu Wu, Yu-Hsuan Liang, Ming-Shih Lee and Jing-Hsien Chen
Int. J. Mol. Sci. 2025, 26(15), 7612; https://doi.org/10.3390/ijms26157612 - 6 Aug 2025
Abstract
Metabolic dysfunction-associated steatotic liver disease (MASLD) begins with hepatic lipid accumulation and triggers insulin resistance. Hibiscus leaf extract exhibits antioxidant and anti-atherosclerotic activities, and is rich in (−)-epicatechin gallate (ECG). Despite ECG’s well-known pharmacological activities and its total antioxidant capacity being stronger than [...] Read more.
Metabolic dysfunction-associated steatotic liver disease (MASLD) begins with hepatic lipid accumulation and triggers insulin resistance. Hibiscus leaf extract exhibits antioxidant and anti-atherosclerotic activities, and is rich in (−)-epicatechin gallate (ECG). Despite ECG’s well-known pharmacological activities and its total antioxidant capacity being stronger than that of other catechins, its regulatory effects on MASLD have not been fully described previously. Therefore, this study attempted to evaluate the anti-MASLD potential of ECG isolated from Hibiscus leaves on abnormal lipid and glucose metabolism in hepatocytes. First, oleic acid (OA) was used as an experimental model to induce lipid dysmetabolism in human primary hepatocytes. Treatment with ECG can significantly (p < 0.05) reduce the OA-induced cellular lipid accumulation. Nile red staining revealed, compared to the OA group, the inhibition percentages of 29, 61, and 82% at the tested doses of ECG, respectively. The beneficial effects of ECG were associated with the downregulation of SREBPs/HMGCR and upregulation of PPARα/CPT1 through targeting AMPK. Also, ECG at 0.4 µM produced a significant (p < 0.01) decrease in oxidative stress by 83%, and a marked (p < 0.05) increase in glycogen synthesis by 145% on the OA-exposed hepatocytes with insulin signaling blockade. Mechanistic assays indicated lipid and glucose metabolic homeostasis of ECG might be mediated via regulation of lipogenesis, fatty acid β-oxidation, and insulin resistance, as confirmed by an AMPK inhibitor. These results suggest ECG is a dual modulator of lipid and carbohydrate dysmetabolism in hepatocytes. Full article
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11 pages, 680 KiB  
Article
Comparative Assessment of Protocols for Microplastic Quantification in Wastewater
by Rubén Rodríguez-Alegre, Sergi Durán-Videra, David Carmona-Fernández, Laura Pérez Megías, Carlos Andecochea Saiz and Xialei You
Microplastics 2025, 4(3), 49; https://doi.org/10.3390/microplastics4030049 - 5 Aug 2025
Abstract
Microplastics are an increasing concern due to their widespread occurrence in aquatic environments worldwide. The lack of a harmonised protocol for their reliable quantification remains a major challenge in current scientific efforts. This study presents a comparative evaluation of three protocols for the [...] Read more.
Microplastics are an increasing concern due to their widespread occurrence in aquatic environments worldwide. The lack of a harmonised protocol for their reliable quantification remains a major challenge in current scientific efforts. This study presents a comparative evaluation of three protocols for the detection and quantification of microplastics in aqueous samples. The protocols were assessed based on quantification efficiency, risk of particle degradation, staining performance, operational complexity, and cost per sample. Protocol A combined Rhodamine B and ethanol staining with NaCl-based density separation, demonstrating strong isolation performance while maintaining minimal chemical hazards and moderate cost (2.45€ per sample) that could be further reduced to 0.45€ per sample by substituting reagent-grade NaCl with table salt. Protocol B offered moderate isolation capacity and presented the highest risk of particle fragmentation, likely due to the use of acetone and high-temperature digestion. Protocol C, based on the combined use of Nile Red and ZnCl2, also presented a risk of particle fragmentation, resulting in the highest MP count for small and hydrophobic particles. In addition, its high cost (15.23€ per sample) limits its suitability for routine application. Full article
(This article belongs to the Collection Feature Paper in Microplastics)
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11 pages, 5943 KiB  
Article
Stabilizing Water-in-Water Emulsions Using Oil Droplets
by Jean-Paul Douliez and Laure Béven
Molecules 2025, 30(15), 3120; https://doi.org/10.3390/molecules30153120 - 25 Jul 2025
Viewed by 268
Abstract
The production of water-in-water emulsion droplets, the coalescence of which is prevented by adding oil-in-water micrometric droplets, is reported. Hexadecane (O) and cetyl trimethyl ammonium bromide (CTAB) were added to a W/W emulsion made of dextran (Dex)-enriched droplets in a Polyethyleglycol (PEG)-enriched continuous [...] Read more.
The production of water-in-water emulsion droplets, the coalescence of which is prevented by adding oil-in-water micrometric droplets, is reported. Hexadecane (O) and cetyl trimethyl ammonium bromide (CTAB) were added to a W/W emulsion made of dextran (Dex)-enriched droplets in a Polyethyleglycol (PEG)-enriched continuous phase, and the mixture was further sonicated. Using Nile red to label the oil droplets enabled the observation of their presence at the surface of Dex droplets (5 µm), allowing for stabilizing them, preventing coalescence of the W/W emulsion, and mimicking W/O/W double emulsions. The addition of sulfate derivative of Dextran (DexSulf) allowed for stable droplets of a slightly larger diameter. By contrast, the addition of carboxymethyl Dextran (CMDex) destabilized the initial aqueous double-like emulsion, yielding sequestration of the oil droplets within the Dex-rich phase. Interestingly, addition of DexSulf to that unstable emulsion re-yielded stable droplets. Similar findings (destabilization) were obtained when adding sodium dodecyl sulfate (SDS) to the initial double-like emulsion, which reformed stable droplets when adding positively charged Dextran (DEAEDex) derivatives. The use of fluorescently (FITC) labeled derivatives of Dextran (Dex, CMDex, DEAEDex, and DexSulf) allowed us to follow their position within, out of, or at the interface of droplets in the above-mentioned mixtures. These findings are expected to be of interest in the field of materials chemistry. Full article
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20 pages, 2317 KiB  
Article
Multifunctional Amphiphilic Biocidal Copolymers Based on N-(3-(Dimethylamino)propyl)methacrylamide Exhibiting pH-, Thermo-, and CO2-Sensitivity
by Maria Filomeni Koutsougera, Spyridoula Adamopoulou, Denisa Druvari, Alexios Vlamis-Gardikas, Zacharoula Iatridi and Georgios Bokias
Polymers 2025, 17(14), 1896; https://doi.org/10.3390/polym17141896 - 9 Jul 2025
Viewed by 456
Abstract
Because of their potential “smart” applications, multifunctional stimuli-responsive polymers are gaining increasing scientific interest. The present work explores the possibility of developing such materials based on the hydrolytically stable N-3-dimethylamino propyl methacrylamide), DMAPMA. To this end, the properties in aqueous solution of the [...] Read more.
Because of their potential “smart” applications, multifunctional stimuli-responsive polymers are gaining increasing scientific interest. The present work explores the possibility of developing such materials based on the hydrolytically stable N-3-dimethylamino propyl methacrylamide), DMAPMA. To this end, the properties in aqueous solution of the homopolymer PDMAPMA and copolymers P(DMAPMA-co-MMAx) of DMAPMA with the hydrophobic monomer methyl methacrylate, MMA, were explored. Two copolymers were prepared with a molar content x = 20% and 35%, as determined by Proton Nuclear Magnetic Resonance (1H NMR). Turbidimetry studies revealed that, in contrast to the homopolymer exhibiting a lower critical solution temperature (LCST) behavior only at pH 14 in the absence of salt, the LCST of the copolymers covers a wider pH range (pH > 8.5) and can be tuned within the whole temperature range studied (from room temperature up to ~70 °C) through the use of salt. The copolymers self-assemble in water above a critical aggregation Concentration (CAC), as determined by Nile Red probing, and form nanostructures with a size of ~15 nm (for P(DMAPMA-co-MMA35)), as revealed by transmission electron microscopy (TEM) and dynamic light scattering (DLS). The combination of turbidimetry with 1H NMR and automatic total organic carbon/total nitrogen (TOC/TN) results revealed the potential of the copolymers as visual CO2 sensors. Finally, the alkylation of the copolymers with dodecyl groups lead to cationic amphiphilic materials with an order of magnitude lower CAC (as compared to the unmodified precursor), effectively stabilized in water as larger aggregates (~200 nm) over a wide temperature range, due to their increased ζ potential (+15 mV). Such alkylated products show promising biocidal properties against microorganisms such as Escherichia coli and Staphylococcus aureus. Full article
(This article belongs to the Special Issue Development and Innovation of Stimuli-Responsive Polymers)
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19 pages, 47429 KiB  
Article
Overexpression of (P)RR in SHR and Renin-Induced HepG2 Cells Leads to Spontaneous Hypertension Combined with Metabolic Dysfunction-Associated Fatty Liver Disease
by Chen Gao, Xinyi Guo, Lingzhi Zhang, Xueman Lin and Hua Sun
Int. J. Mol. Sci. 2025, 26(13), 6541; https://doi.org/10.3390/ijms26136541 - 7 Jul 2025
Viewed by 525
Abstract
Hypertension and metabolic dysfunction-associated fatty liver disease (MAFLD) are both common chronic diseases globally. Nearly half of patients with hypertension are complicated by MAFLD. The mechanisms of the bidirectional promotion between the two remain unclear. The (pro) renin receptor ((P)RR) is one of [...] Read more.
Hypertension and metabolic dysfunction-associated fatty liver disease (MAFLD) are both common chronic diseases globally. Nearly half of patients with hypertension are complicated by MAFLD. The mechanisms of the bidirectional promotion between the two remain unclear. The (pro) renin receptor ((P)RR) is one of the classic members of the renin–angiotensin system (RAS) and serves as the receptor for prorenin. Although the role of (P)RR in the induction and progression of hypertension has been extensively studied, its role and underlying mechanisms in MAFLD remain underreported. In this study, we aim to investigate the role of (P)RR in the pathogenesis of hypertension combined with MAFLD. In this study, SHRs were used for the model for hypertension combined with MAFLD. Liver lipid content analysis, liver H&E staining, the detection of (P)RR, ERK and downstream proteins related to fatty acid synthesis and transport, and RNA sequencing and data analysis were performed. In the in vitro experiments, we activated (P)RR using renin and established the lipid deposition model of HepG2 cells induced by renin for the first time. (P)RR was specifically blocked using handle region peptide (HRP), and Nile red fluorescence staining, (P)RR/ERK/PPARγ protein expression analysis, and immunofluorescence were performed to further verify the role of (P)RR in the pathogenesis of hypertension combined with MAFLD. Our results demonstrate that (P)RR plays a role in the development and progression of hypertension combined with MAFLD. The hepatic TG and FFA levels in the SHRs were increased, and the protein expression of the (P)RR/ERK/PPARγ pathway and downstream proteins related to fatty acid synthesis and transport were upregulated. HRP reversed the activation of these proteins and reduced intracellular lipid accumulation. In conclusion, our study first reveals that (P)RR is a potential therapeutic target for hypertension combined with MAFLD. And we found the (P)RR/ERK/PPARγ axis for the first time, which plays an important role in the progression of spontaneous hypertension combined with MAFLD. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
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17 pages, 13222 KiB  
Article
Limited Myelination Capacity in Human Schwann Cells in Experimental Models in Comparison to Rodent and Porcine Schwann Cells
by Tak-Ho Chu and Rajiv Midha
Int. J. Mol. Sci. 2025, 26(13), 6457; https://doi.org/10.3390/ijms26136457 - 4 Jul 2025
Viewed by 387
Abstract
Schwann cells (SCs) play a crucial role in peripheral nerve repair by supporting axonal regeneration and remyelination. While extensive research has been conducted using rodent SCs, increasing attention is being directed toward human SCs due to species-specific differences in phenotypical and functional properties, [...] Read more.
Schwann cells (SCs) play a crucial role in peripheral nerve repair by supporting axonal regeneration and remyelination. While extensive research has been conducted using rodent SCs, increasing attention is being directed toward human SCs due to species-specific differences in phenotypical and functional properties, and accessibility of human SCs derived from diverse sources. A major challenge in translating SC-based therapies for nerve repair lies in the inability to replicate human SC myelination in vitro, posing a significant obstacle to drug discovery and preclinical research. In this study, we compared the myelination capacity of human, rodent, and porcine SCs in various co-culture conditions, including species-matched and cross-species neuronal environments in a serum-free medium. Our results confirmed that rodent and porcine SCs readily myelinate neurites under standard culture conditions after treatment with ascorbic acid for two weeks, whereas human SCs, at least within the four-week observation period, failed to show myelin staining in all co-cultures. Furthermore, we investigated whether cell culture manipulation impairs human SC myelination by transplanting freshly harvested and predegenerated human nerve segments into NOD-SCID mice for four weeks. Despite supporting host axonal regeneration into the grafts, human SCs exhibited very limited myelination, suggesting an intrinsic species-specific restriction rather than a cell culture-induced defect. These observations suggest fundamental differences between human and rodent SCs and highlight the need for human-specific models and protocols to advance our understanding of SC myelination. Full article
(This article belongs to the Special Issue Plasticity of the Nervous System after Injury: 2nd Edition)
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10 pages, 411 KiB  
Communication
Cervids as a Promising Pillar of an Integrated Surveillance System for Emerging Infectious Diseases in Hungary: A Pilot Study
by István Lakatos, Péter Malik, Kornélia Bodó, Zsuzsanna Szőke, Farkas Sükösd, Zsófia Lanszki, László Szemethy, Kornélia Kurucz, Krisztián Bányai, Gábor Kemenesi and Brigitta Zana
Animals 2025, 15(13), 1948; https://doi.org/10.3390/ani15131948 - 2 Jul 2025
Viewed by 999
Abstract
Wildlife serves as a significant reservoir for various pathogens transmissible to domestic animals and humans. Vector-borne diseases represent an increasing concern in Europe, affecting both animal and human health. This pilot study investigated the circulation of endemic and emerging vector-borne viruses in wild [...] Read more.
Wildlife serves as a significant reservoir for various pathogens transmissible to domestic animals and humans. Vector-borne diseases represent an increasing concern in Europe, affecting both animal and human health. This pilot study investigated the circulation of endemic and emerging vector-borne viruses in wild ungulates in Hungary, utilizing a One Health approach. Serum samples were obtained from European fallow deer (Dama dama), red deer (Cervus elaphus), and roe deer (Capreolus capreolus) during routine national game management activities between 2020 and 2023. Samples were analyzed for antibodies against the Bluetongue virus (BTV), West Nile virus (WNV), and Epizootic hemorrhagic disease virus (EHDV) using ELISA and neutralization tests. The results revealed a WNV seroprevalence of 22.3% in fallow deer and 31.8% in red deer, while BTV seroprevalence was 2.5% in fallow deer. All samples were negative for EHDV antibodies. These findings confirm the circulation of WNV and BTV in Hungarian wild ungulates. While the study’s design precludes statistical analysis due to non-random sampling, it demonstrates the potential of integrating wild ungulate serosurveillance into disease monitoring programs, leveraging established wildlife management activities for a cost-effective and complementary approach to One Health surveillance, particularly considering the ongoing spread of EHDV in Europe and the importance of BTV serotype monitoring for effective vaccination strategies. Full article
(This article belongs to the Section Wildlife)
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17 pages, 3768 KiB  
Article
Long-Term Innovative Trend Analysis of Hydro-Climatic Data of the Sudd Region of South Sudan
by Robert Galla, Hiroshi Ishidaira, Jun Magome and Kazuyoshi Souma
Water 2025, 17(13), 1961; https://doi.org/10.3390/w17131961 - 30 Jun 2025
Viewed by 443
Abstract
Floods and droughts are natural disasters that disrupt livelihoods and destroy the environment, with floods constituting up to 40% of all natural disasters globally. South Sudan has experienced severe, recurrent flooding for decades, with two-thirds of the country affected. An integrated flood management [...] Read more.
Floods and droughts are natural disasters that disrupt livelihoods and destroy the environment, with floods constituting up to 40% of all natural disasters globally. South Sudan has experienced severe, recurrent flooding for decades, with two-thirds of the country affected. An integrated flood management system is urgently needed to mitigate impacts and improve community resilience. This requires understanding the inundation process and analyzing flood causes and characteristics. This research leverages data from the Climate Hazards Center InfraRed Precipitation with Station (CHIRPS v2.0) to examine rainfall patterns and analyze trends in annual total precipitation (PRCPTOT), days with precipitation ≥ 20 mm (R20 mm), and simple precipitation intensity (SDII) at the basin scale. It also incorporates Nile River flow data from the Mangala station and Lake Victoria water levels from satellite altimetry. Findings indicate decreasing trends in PRCPTOT, R20 mm, and SDII in Jonglei and Unity States, but increasing trends in river flows and Lake Victoria levels. The Global Surface Water dataset reveals increased water surface areas in these states. These findings suggest that river flow trends oppose rainfall patterns, indicating that local rainfall is not the primary contributor to the recurrent flooding in the area. Full article
(This article belongs to the Special Issue Watershed Hydrology and Management under Changing Climate)
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16 pages, 305 KiB  
Article
Pre-Slaughter Rest Is Effective in Improving the Physiology and Quality of Nile Tilapia Fillets Subjected to In Vivo Transportation at High Densities
by Maria Ildilene da Silva, Valfredo Figueira da Silva, Marcio Douglas Goes, Sara Ugulino Cardoso, Leonardo Aluisio Baumgartner, Maria Luiza Rodrigues de Souza, Claucia Aparecida Honorato, Robie Allan Bombardelli and Elenice Souza dos Reis Goes
Foods 2025, 14(13), 2279; https://doi.org/10.3390/foods14132279 - 27 Jun 2025
Viewed by 573
Abstract
This study evaluated the impact of transporting Nile tilapia at stocking densities of 250 kg/m3 and 500 kg/m3 for 1 h, with post-transport resting periods of 0, 2, 4, and 6 h, on biochemical parameters and fillet quality. A 2 × [...] Read more.
This study evaluated the impact of transporting Nile tilapia at stocking densities of 250 kg/m3 and 500 kg/m3 for 1 h, with post-transport resting periods of 0, 2, 4, and 6 h, on biochemical parameters and fillet quality. A 2 × 4 factorial design was employed for the experiment, with 15 repetitions per treatment. The density of 500 kg/m3 resulted in a longer time to rigor mortis after 4 h of rest, while shorter rigor times were observed at 0 and 2 h. Fillets taken from fish transported at 250 kg/m3 for 4 h exhibited greater intensities of red and yellow color. The highest weight loss during cooking occurred in fish transported at 500 kg/m3 without rest. High-density stocking increased the pH of the fillets, reduced color intensity, and increased weight loss and drip loss. Resting periods of 4 and 6 h resulted in firmer fillets with improved water retention. Fish rested for 6 h at 250 kg/m3 recovered glycogen and glucose levels, indicating restored homeostasis. In contrast, fish subjected to high-density transport showed impaired metabolic recovery and compromised fillet quality. These results support the use of resting periods to improve fish welfare and product quality in aquaculture systems. Full article
(This article belongs to the Special Issue Effect of Pre-slaughter and Stunning Methods on Farmed Fish Quality)
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15 pages, 1834 KiB  
Article
Metal-Free Graphene/Conjugated Microporous Polymer Mott–Schottky Heterojunctions: A Design Strategy for High-Efficiency, Durable Photocatalysts
by Selsabil Chikhi, Sander Dekyvere, Shuai Li, Chih-Ming Kao and Francis Verpoort
Catalysts 2025, 15(7), 609; https://doi.org/10.3390/catal15070609 - 20 Jun 2025
Viewed by 451
Abstract
Conjugated microporous polymers (CMP) are advanced photocatalytic systems for degrading organic dyes. However, their potential and efficiency are often limited by rapid electron–hole pair (e/h+) recombination. To overcome this limitation, this study proposes a strategy that involves designing a [...] Read more.
Conjugated microporous polymers (CMP) are advanced photocatalytic systems for degrading organic dyes. However, their potential and efficiency are often limited by rapid electron–hole pair (e/h+) recombination. To overcome this limitation, this study proposes a strategy that involves designing a Mott–Schottky heterojunction and integrating graphene sheets with a near-zero bandgap into the CMP-1 framework, resulting in a non-covalent graphene/CMP (GCMP) heterojunction composite. GCMP serves two main functions: physical adsorption and photocatalytic absorption that uses visible light energy to trigger and degrade the organic dye. GCMP effectively degraded four dyes with both anionic and cationic properties (Rhodamine B; Nile Blue; Congo Red; and Orange II), demonstrating stable recyclability without losing its effectiveness. When exposed to visible light, GCMP generates reactive oxygen species (ROS), primarily singlet oxygen (1O2), and superoxide radicals (O2), degrading the dye molecules. These findings highlight GCMP’s potential for real-world applications, offering a metal-free, cost-effective, and environmentally friendly solution for wastewater treatment. Full article
(This article belongs to the Special Issue Catalytic Materials for Hazardous Wastewater Treatment)
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14 pages, 4066 KiB  
Article
Microplastics in Stormwater: Sampling and Methodology Challenges
by Andres Sanchez Garcia, Huayun Zhou, Cesar Gomez-Avila, Tariq Hussain, Aryan Roghani, Danny Reible and Balaji Anandha Rao
Toxics 2025, 13(6), 502; https://doi.org/10.3390/toxics13060502 - 14 Jun 2025
Viewed by 683
Abstract
Stormwater runoff is a significant source of microplastics to surface water. This study addresses challenges in the sampling, treatment, and characterization of microplastics in existing stormwater control measures across various regions in the United States. Stormwater sediment samples were collected via traditional stormwater [...] Read more.
Stormwater runoff is a significant source of microplastics to surface water. This study addresses challenges in the sampling, treatment, and characterization of microplastics in existing stormwater control measures across various regions in the United States. Stormwater sediment samples were collected via traditional stormwater sampling approaches for particulate and inorganic contamination with portable automatic samplers, analyzed using visible and fluorescence microscopy with Nile red as a selective stain, and subsequently confirmed through Raman spectroscopy. The inclusion of laboratory and field blanks enabled the identification of contamination at key steps during sample handling. The results reveal that the filtration process is a significant source of laboratory contamination, while the sampling process itself could be a primary contributor to overall sample contamination. Additionally, it was found that using green fluorescence as the sole emission wavelength may underestimate MP quantities, as some particles emit fluorescence exclusively in the red spectrum. Raman analysis revealed interferences caused by pigments and additives in plastics, along with challenges evaluating particles in the low micron range (≤10 microns), which complicates a comprehensive analysis. The findings of this study emphasize the importance of implementing strong quality assurance and control measures when assessing the levels of microplastics in the environment, including sample collection, processing, and analysis. Full article
(This article belongs to the Special Issue Contaminants of Emerging Concern (CECs) in the Water Cycle)
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19 pages, 2229 KiB  
Article
Dyeing to Know: Harmonizing Nile Red Staining Protocols for Microplastic Identification
by Derek Ho and Julie Masura
Colorants 2025, 4(2), 20; https://doi.org/10.3390/colorants4020020 - 3 Jun 2025
Cited by 1 | Viewed by 1281
Abstract
The increasing prevalence of microplastic (MP) pollution and the labor-intensive nature of existing identification methods necessitate improved large-scale detection approaches. Nile Red (NR) fluorescence, which varies with polarity, offers a potential classification method, but standardization of carrier solvents and fluorescence differentiation techniques remains [...] Read more.
The increasing prevalence of microplastic (MP) pollution and the labor-intensive nature of existing identification methods necessitate improved large-scale detection approaches. Nile Red (NR) fluorescence, which varies with polarity, offers a potential classification method, but standardization of carrier solvents and fluorescence differentiation techniques remains lacking. This study evaluated eight NR-carrier solvents (n-hexane, chloroform, acetone, methanol, ethanol, acetone/hexane, acetone/ethanol, and acetone/water) across ten common MP polymers (HDPE, LDPE, PP, EPS, PS, PC, ABS, PVC, PET, and PA). Fluorescence intensity, Stokes shift, and solvent-induced polymer degradation were analyzed. The study also assessed HSV (Hue/Saturation/Value) color spaces for Stokes shift representation and MP differentiation. Fenton oxidation effectively quenched fluorescence in natural organic matter (e.g., eggshells, fingernails, wood, cotton) while preserving NR-stained MPs. Acetone/water [25% (v/v)] emerged as the optimal solvent, balancing fluorescence performance and minimal degradation. Full article
(This article belongs to the Special Issue Feature Papers in Colorant Chemistry)
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21 pages, 2380 KiB  
Article
Genetic Structure, Selective Signatures, and Single Nucleotide Polymorphism Fingerprints of Blue Tilapia (Oreochromis aureus), Nile Tilapia Oreochromis niloticus), and Red Tilapia (Oreochromis spp.), as Determined by Whole-Genome Resequencing
by Jixiang Hua, Yifan Tao, Siqi Lu, Qingchun Wang, Hui Sun, Yalun Dong and Jun Qiang
Int. J. Mol. Sci. 2025, 26(10), 4910; https://doi.org/10.3390/ijms26104910 - 20 May 2025
Viewed by 629
Abstract
Tilapia (Oreochromis spp.) is a globally important farmed fish. Analyses of genetic variation across different types of tilapia are essential for the development of superior breeding populations. We investigated the genetic structures of breeding populations of blue tilapia (Oreochromis aureus) [...] Read more.
Tilapia (Oreochromis spp.) is a globally important farmed fish. Analyses of genetic variation across different types of tilapia are essential for the development of superior breeding populations. We investigated the genetic structures of breeding populations of blue tilapia (Oreochromis aureus) (OA), Nile tilapia (Oreochromis niloticus) (ON), and red tilapia (Oreochromis spp.) (OS) by whole-genome resequencing. The results showed that the OS population had maintained high genetic diversity but significant genetic differentiation from the OA population. Principal component analysis, phylogenetic analysis, and genetic clustering analysis revealed a clear pattern of genetic differentiation among the three populations. The genetic structure of the ON population differed from that of the OA population but was similar to that of the OS population. Population kinship analysis revealed a close relationship between the ON and OS populations. Selective scanning analyses of three comparison groups (OA vs. ON, OA vs. OS, and ON vs. OS) revealed population-selected regions related to metabolism, endocrine, and immune systems, harboring key genes (qrsl1, pde4d, hras, ikbkb, prkag1, prkaa2, prkacb, irs2, and eif4e2). These key genes were related to growth, reproduction, and disease resistance, indicating that breeding programs have selected for these traits. Due to the lack of stable morphological characteristics of juvenile fish and the changes in external environmental conditions that lead to changes in individual morphological characteristics, SNP fingerprints were successfully constructed for the identification of the three populations based on the differences in SNPs. Based on the five core SNP markers, two combinations of SNP markers were developed to accurately identify the three populations of tilapia at the genomic level. These results provide new information about tilapia genetic resources and reference data for identification and breeding purposes. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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21 pages, 3791 KiB  
Article
Evaluating the Growth Performance of Nile and Red Tilapia and Its Influence on Morphological Growth and Yield of Intercropped Wheat and Sugar Beet Under a Biosaline Integrated Aquaculture–Agriculture System
by Khaled Madkour, Fahad Kimera, Muziri Mugwanya, Rafat A. Eissa, Sameh Nasr-Eldahan, Kholoud Aref, Walaa Ahmed, Eman Farouk, Mahmoud A. O. Dawood, Yasmine Abdelmaksoud, Mohamed F. Abdelkader and Hani Sewilam
Plants 2025, 14(9), 1346; https://doi.org/10.3390/plants14091346 - 29 Apr 2025
Viewed by 803
Abstract
Integrated aquaculture–agriculture systems (IAASs) offer a sustainable approach to mitigating soil salinity by utilizing aquaculture effluents for irrigation. This study evaluates the growth performance of Nile tilapia (Oreochromis niloticus) and red tilapia (Oreochromis spp.) under varying salinity conditions and investigates [...] Read more.
Integrated aquaculture–agriculture systems (IAASs) offer a sustainable approach to mitigating soil salinity by utilizing aquaculture effluents for irrigation. This study evaluates the growth performance of Nile tilapia (Oreochromis niloticus) and red tilapia (Oreochromis spp.) under varying salinity conditions and investigates their effluents on intercropped wheat and sugar beet. A field experiment was conducted using a randomized block design with seven treatments: control (chemical fertilizers dissolved in freshwater) and brackish water effluents from Nile tilapia and red tilapia at salinities of 5 ppt and 10 ppt as monocultures or mixed polycultures. Fish growth parameters were assessed, while wheat and sugar beet morphological and yield traits were monitored. Statistical analyses, including correlation and principal component analysis, were performed. Red tilapia outperformed Nile tilapia at 10 ppt salinity, achieving the highest final weight (174.52 ± 0.01 g/fish) and weight gain (165.78 ± 0.01 g/fish), while the mixed polyculture at 10 ppt exhibited optimal feed conversion (FCR: 1.32 ± 0.01). Wheat growth and yield traits (plant height, stalk diameter, and panicle weight) declined significantly under salinity stress, with 10 ppt treatments reducing plant height by ~57% compared to the control. Conversely, sugar beet demonstrated resilience, with total soluble solids (TSS) increasing by 20–30% under salinity. The mixed effluent partially mitigated salinity effects on wheat at 5 ppt but not at 10 ppt. This study highlights the potential of IAAS in saline environments, demonstrating red tilapia’s adaptability and sugar beet’s resilience to salinity stress. In contrast, wheat suffered significant reductions in growth and yield. Full article
(This article belongs to the Special Issue Fertilizer and Abiotic Stress)
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13 pages, 2233 KiB  
Article
Role of LIN28B in the Regulation of Ribosomal Biogenesis and Lipid Metabolism in Medulloblastoma Brain Cancer Cells
by Ahmed Maklad, Mohammed Sedeeq, Kaveh Baghaei, Richard Wilson, John A. Heath, Nuri Gueven and Iman Azimi
Proteomes 2025, 13(2), 14; https://doi.org/10.3390/proteomes13020014 - 27 Mar 2025
Viewed by 1334
Abstract
Background: Medulloblastoma (MB) is the most aggressive paediatric brain cancer, highlighting the urgent need for new diagnostic and prognostic biomarkers and improved treatments to enhance patient outcomes. Our previous study identified LIN28B, an RNA-binding protein, as a potential diagnostic and prognostic marker for [...] Read more.
Background: Medulloblastoma (MB) is the most aggressive paediatric brain cancer, highlighting the urgent need for new diagnostic and prognostic biomarkers and improved treatments to enhance patient outcomes. Our previous study identified LIN28B, an RNA-binding protein, as a potential diagnostic and prognostic marker for MB and a pharmacological target to inhibit MB cell proliferation and stemness. However, the specific role of LIN28B and its mechanism of action in MB had not been studied. Methods: This study assessed LIN28B’s role in Daoy MB cells using siRNA-mediated silencing. LIN28B silencing was achieved with Dharmacon ON-TARGETplus SMARTpool and confirmed by Western blotting. Proliferation and protein assays evaluated the cell metabolic activity and viability. A proteomics analysis was conducted to examine the effect of LIN28B knockdown on the MB cell protein expression profile. The intracellular lipid droplets were assessed using the Nile Red Staining Kit, and nucleolar B23 protein levels were assessed by immunofluorescence. Both were visualised with a high-content IN Cell Analyser 2200. Results: Effective LIN28B silencing (>80%) was achieved in each experiment. LIN28B knockdown reduced the MB cell viability, impaired ribosome biogenesis, and promoted cellular lipid accumulation, as supported by proteomics and cell-based assays. Conclusions: This study highlights LIN28B as a promising target for regulating MB cell growth, ribosomal biogenesis, and lipid metabolism. Full article
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