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18 pages, 29477 KB  
Article
Assessing Forestry Reclamation Success in Lignite Mine External Dumps Using Remote Sensing Techniques
by Bogna Mika and Jakub Ceglarek
Sustainability 2026, 18(9), 4493; https://doi.org/10.3390/su18094493 (registering DOI) - 2 May 2026
Abstract
Open-pit lignite mining causes significant environmental alterations, particularly through the removal of soil deposits and the creation of external dumps, which necessitate effective reclamation to restore landscape structures. This study evaluates the potential of using multi-temporal remote sensing data to assess the effectiveness [...] Read more.
Open-pit lignite mining causes significant environmental alterations, particularly through the removal of soil deposits and the creation of external dumps, which necessitate effective reclamation to restore landscape structures. This study evaluates the potential of using multi-temporal remote sensing data to assess the effectiveness of forest reclamation on selected external dumps of the Adamów, Bełchatów, and Turów Lignite Mines in Poland. Using Landsat imagery spanning five decades from 1976 to 2023, the study monitors vegetation development through the Normalized Difference Vegetation Index (NDVI) and the Soil-Adjusted Vegetation Index (SAVI). Reclaimed forest stands were compared against undisturbed reference forests within a 30 km buffer zone, with recovery defined as achieving 95% of the reference values. The results indicate that most studied sites reached a state of recovery, with success closely linked to the specific reclamation measures implemented and the age of the forest stands. Notably, the Adamów mine, which utilized Bender’s target species method, demonstrated rapid results, achieving high similarity to reference forests early in the analyzed period. In contrast, recovery in Bełchatów and Turów was more gradual, following trajectories influenced by pioneer and biodynamic afforestation methods. Ultimately, the study confirms that remote sensing is a highly efficient tool for monitoring extensive post-mining areas over long periods, providing a general assessment of biological restoration success. Full article
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26 pages, 11504 KB  
Article
Diversity, Taxonomy, and Pathogenicity of Members of Fusarium tricinctum Species Complex Associated with Wild Rosaceae Fruits
by Asanka Madhushan, Paul W. J. Taylor, Ahmed Mahmoud Ismail, Jian-Kui Liu and Sajeewa S. N. Maharachchikumbura
J. Fungi 2026, 12(5), 333; https://doi.org/10.3390/jof12050333 (registering DOI) - 2 May 2026
Abstract
This study investigated Fusarium species associated with seven wild relatives of four economically important Rosaceae fruits in Sichuan Province, China, including wild strawberry (Fragaria sp. and Potentilla indica), wild raspberry (Rubus rosaefolius), wild cherry (Prunus sp., Maddenia sp. [...] Read more.
This study investigated Fusarium species associated with seven wild relatives of four economically important Rosaceae fruits in Sichuan Province, China, including wild strawberry (Fragaria sp. and Potentilla indica), wild raspberry (Rubus rosaefolius), wild cherry (Prunus sp., Maddenia sp. and Prunus leveilleana), and wild apple (Malus kansuensis). Based on multi-gene phylogenetic analyses and morphological characteristics, seven Fusarium species within the Fusarium tricinctum species complex (FTSC) were identified. Among these, four are described as new species (F. fragariae, F. potentillae, F. pruni and F. fructicola), while the remaining three represent new host records (F. avenaceum, F. diversisporum and F. paeoniae). In addition, phylogenetic and morphological evidence indicated that F. rosiradicicola is conspecific with F. diversisporum. Prioritizing the oldest epithet, we synonymized F. rosiradicicola under F. diversisporum. The pathogenicity of the isolates was evaluated on both their wild hosts and the corresponding cultivated fruits using detached, wound-inoculated assays. All tested isolates produced symptoms, showing pathogenic potential under experimental conditions. This study shows that selected wild Rosaceae fruits harbor several members of the FTSC and provides preliminary evidence of cross-host susceptibility under experimental conditions. However, further field-based investigations and non-wound inoculation studies are required to clarify their ecological roles, natural host susceptibility, and potential relevance in cultivated systems. Full article
(This article belongs to the Special Issue The Dark Side of Ascomycetes)
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17 pages, 7276 KB  
Article
WASTEland—Claudia Bosse’s Performative Activation of Haunted Landscapes as an Embodied Form of Planetary Thinking
by Martina Ruhsam
Arts 2026, 15(5), 96; https://doi.org/10.3390/arts15050096 (registering DOI) - 2 May 2026
Abstract
Gayatri Spivak suggests that we turn our attention to the planet rather than to the globe. While she recognizes the planet in the species of alterity, she considers the globe to be an abstract quantity linked with the desire for control through digital [...] Read more.
Gayatri Spivak suggests that we turn our attention to the planet rather than to the globe. While she recognizes the planet in the species of alterity, she considers the globe to be an abstract quantity linked with the desire for control through digital quantification methods. This article discusses Claudia Bosse’s choreographic approach of re-imagining the human being as a planetary subject by investigating her dance performance WASTEland (2025), which took place on a piece of fallow land near Vienna Central Station. The choreographer turned this wasteland into her artistic laboratory and workplace for seven months. Using a mixed-method approach—combining performance analysis and discourse analysis—and drawing from planetary thinking and new materialism, I analyze Bosse’s artistic research, which raises the question of the relationship of precarious landscapes and the precarity of the bodies that perform (on) them, exposed to their climatic and ecological conditions as well as to their uncontrollable inhabitants, both human and other-than-human. How can wasteland and building sites be artistically activated? Does working and dancing on/with wasteland signify a withdrawal from urgent political issues or does this physical exposure enable a shift of perspective in regard to political miseries? Full article
(This article belongs to the Special Issue Bodies on Edge in a Globalized World)
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12 pages, 561 KB  
Article
Biomass Production and Nitrogen Accumulation of Summer Cover Crop Mixtures Under Two Sowing Dates in a Cool Temperate Climate
by Kristo Tikk, Liina Talgre, Karli Sepp, Liina Edesi, Karin Kauer, Viacheslav Eremeev and Merili Toom
Agronomy 2026, 16(9), 927; https://doi.org/10.3390/agronomy16090927 (registering DOI) - 2 May 2026
Abstract
Summer cover crops can improve soil fertility and contribute to nitrogen (N) supply in temperate cropping systems, yet the effects of mixture composition and sowing timing remain insufficiently documented. This study evaluated biomass production and N accumulation of five multispecies cover crop mixtures [...] Read more.
Summer cover crops can improve soil fertility and contribute to nitrogen (N) supply in temperate cropping systems, yet the effects of mixture composition and sowing timing remain insufficiently documented. This study evaluated biomass production and N accumulation of five multispecies cover crop mixtures grown in Estonia during 2024–2025 under two sowing dates per year. Aboveground biomass, botanical composition, and carbon (C) and nitrogen concentrations were measured to assess productivity, species contributions, and residue quality. Earlier sowing was generally associated with higher biomass and N accumulation, with first-sown mixtures producing, on average, 38.7% more biomass than later-sown mixtures. Mixture performance was strongly shaped by species composition and competitive hierarchies. Total N accumulation of the cover crop mixtures ranged from 42 to 275 kg N ha−1 depending on mixture composition and sowing time, with mixtures dominated by common vetch (Vicia sativa L.) achieving the highest values. Oat (Avena sativa) dominated and contributed substantially to biomass in mixtures lacking competitive legumes, whereas sunflower (Helianthus annuus) and maize (Zea mays) performed less well under delayed sowing. Low-growing species such as Persian clover (Trifolium resupinatum) produced little biomass when grown with highly competitive species. Legumes exhibited lower C:N ratios than non-legumes, while mixture-level values remained moderate, suggesting residue quality with potential for favourable decomposition and nutrient release in summer cover crop systems under temperate conditions. Full article
35 pages, 5290 KB  
Review
Single-Atom Catalysts for Fuel-Cell Cathodes: Atomic-Level Design, Mechanistic Insights, and Practical Challenges
by Yellatur Chandra Sekhar and Sungbo Cho
Processes 2026, 14(9), 1473; https://doi.org/10.3390/pr14091473 - 1 May 2026
Abstract
The cathodic oxygen reduction reaction (ORR) remains a major kinetic barrier to high-efficiency proton exchange membrane fuel cells (PEMFCs), motivating the search for electrocatalysts that combine high activity, low metal usage, and long-term durability. This review examines single-atom catalysts (SACs) as an emerging [...] Read more.
The cathodic oxygen reduction reaction (ORR) remains a major kinetic barrier to high-efficiency proton exchange membrane fuel cells (PEMFCs), motivating the search for electrocatalysts that combine high activity, low metal usage, and long-term durability. This review examines single-atom catalysts (SACs) as an emerging platform for fuel-cell cathodes with particular emphasis on how atomic-level design, ORR mechanism, and practical deployment barriers are interrelated. The review discusses the key ORR pathways, intermediate binding principles, and scaling constraints that govern cathodic performance, and examines how metal-center selection, coordination-environment engineering, support regulation, synergistic multi-site construction, and morphology-controlled synthesis can be used to tune intrinsic activity and stabilize isolated active sites. It further highlights mechanistic insights from theoretical and operando studies, with emphasis on structure–activity relationships, dynamic active-site evolution, and approaches to mitigate scaling limitations. Major barriers to practical deployment, including carbon corrosion, demetalization, agglomeration, peroxide/reactive oxygen species attack, and the persistent gap between half-cell metrics and membrane electrode assembly performance, are also critically assessed. Rather than treating these topics separately, this review discusses them as connected factors that together determine the viability of SAC-based fuel-cell cathodes. Full article
(This article belongs to the Special Issue Recent Advances in Industrial Applications of Photo/Electrocatalysis)
13 pages, 1910 KB  
Article
Additive Biomass and Carbon Models for Bambusa emeiensis L.C.Chia & H.L.Fung: A Multi-Regional Study in Southwestern China
by Miao Liu, Chunju Cai, Guanglu Liu, Xiaopeng Shi, Shuguang Li and Shaohui Fan
Forests 2026, 17(5), 559; https://doi.org/10.3390/f17050559 - 30 Apr 2026
Viewed by 19
Abstract
Bamboo plantations are increasingly recognized as significant terrestrial carbon sinks, yet accurate estimation of biomass and carbon stocks requires species-specific, regionally validated allometric models. Bambusa emeiensis L.C.Chia & H.L.Fung (ci bamboo) is among the most ecologically and economically important clump-forming bamboo species in [...] Read more.
Bamboo plantations are increasingly recognized as significant terrestrial carbon sinks, yet accurate estimation of biomass and carbon stocks requires species-specific, regionally validated allometric models. Bambusa emeiensis L.C.Chia & H.L.Fung (ci bamboo) is among the most ecologically and economically important clump-forming bamboo species in southwestern China, but robust multi-regional allometric models are lacking. Using destructive sampling data from 127 culms across two major production areas—Sichuan Province (n = 82) and Guizhou Province (n = 45)—we developed additive biomass and carbon storage model systems enforcing mathematical additivity via nonlinear seemingly unrelated regression (NSUR). Allometric equations used diameter at breast height (D), culm height (H), and compound variables (DH, D2H) as predictors. Regional models achieved Ra2 of 0.0879–0.8320 total relative error (TRE): −0.99% to 0.04% for biomass and Ra2 of 0.0923–0.8282 (TRE: −1.01% to 0.03%) for carbon storage; culm and total aboveground models attained Ra2 ≥ 0.52. Organ-level carbon content (40.79%–44.46%) was significantly lower than the intergovernmental panel on climate change (IPCC) default of 50% (one-sample t-test, p < 0.01 for all organs), with Sichuan values exceeding Guizhou values (independent-samples t-test, p < 0.01), indicating that use of the default would overestimate carbon stocks by 12%–22%. Cross-regional validation revealed prediction biases of up to ±19.24% when applying single-region models outside their training area, whereas the combined model held errors within ±11.36% for biomass and ±8.49% for carbon storage. External validation using 32 independent culms from Hunan, Yunnan, and Chongqing confirmed the robustness of the combined model (TRE: −6.30% to 4.27%). A key limitation is that belowground biomass was not measured. The established models provide scientifically rigorous and practically applicable tools for regional carbon accounting of B. emeiensis plantations under China’s national greenhouse gas inventory framework and for informing sustainable bamboo management planning, and demonstrate that species- and region-specific carbon fractions are essential for accurate carbon stock assessments. Full article
(This article belongs to the Section Forest Ecology and Management)
16 pages, 2473 KB  
Article
Incorporating Crop-Centric Segmentation and Enhanced YOLOv10 for Indirect Weed Detection in Bok Choy Fields
by Weili Li, Wenpeng Zhu, Qianyu Wang, Feng Gao, Kang Han and Xiaojun Jin
Agronomy 2026, 16(9), 907; https://doi.org/10.3390/agronomy16090907 - 30 Apr 2026
Viewed by 57
Abstract
Weed infestation poses a significant threat to bok choy (Brassica rapa subsp. chinensis) cultivation, reducing crop yield and quality through resource competition and pest facilitation. Traditional weed detection methods face two major bottlenecks: one is data annotation, arising from the need for [...] Read more.
Weed infestation poses a significant threat to bok choy (Brassica rapa subsp. chinensis) cultivation, reducing crop yield and quality through resource competition and pest facilitation. Traditional weed detection methods face two major bottlenecks: one is data annotation, arising from the need for extensive, species-diverse datasets, and the other is visual discrimination, due to the high morphological similarity between crops and weeds at certain growth stages. To address these challenges, this study proposed an indirect weed detection framework that combines an optimized You Only Look Once version 10 (YOLOv10) model for crop detection with Excess Green ExG-based segmentation of residual vegetation. The model incorporates RFD and C2f-WDBB modules to improve feature preservation and multi-scale fusion. Compared with baseline YOLOv10, the final proposed RCW-YOLOv10 reduced the number of parameters by 1.04 million and improved detection performance, achieving increases of 3.5%, 1.5%, and 1.1% percentage points in Precision, Recall, and mAP50, respectively, under field conditions. The system initially detected bok choy plants, subsequently localizing weeds by masking crop regions and thresholding residual ExG signals in the uncovered areas. The detected weed coordinates were used to construct a distribution map that may support targeted control in precision agriculture. This approach simplifies weed identification under the tested bok choy field conditions and may be adaptable to other crops after further validation. Full article
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22 pages, 12252 KB  
Article
A Multi-Tissue Transcriptomic Atlas of River Buffalo with a Focus on the Genetic Underpinnings of Lactation Performance Across Four Lactation Stages in the Mammary Gland
by Xinhui Song, Dong Wang, Xier Luo, Chaobin Qin, Ling Li, Yanyan Yang, Yifei Pi, Yanfei Deng, Kuiqing Cui, Zhipeng Li, Wei Xu and Qingyou Liu
Int. J. Mol. Sci. 2026, 27(9), 4032; https://doi.org/10.3390/ijms27094032 - 30 Apr 2026
Viewed by 3
Abstract
The river buffalo is an economically important livestock species supplying milk and meat. However, a multi-tissue transcriptomic atlas for the key dairy river buffalo breeds, Murrah and Nili-Ravi, has not yet been established, and the lack of stable reference genes has hindered in-depth [...] Read more.
The river buffalo is an economically important livestock species supplying milk and meat. However, a multi-tissue transcriptomic atlas for the key dairy river buffalo breeds, Murrah and Nili-Ravi, has not yet been established, and the lack of stable reference genes has hindered in-depth studies of their biological functions and the molecular mechanisms underlying key economic traits such as lactation. We established a multi-tissue gene expression atlas across 20 tissues and identified 717 housekeeping genes (HKGs), and RPL37A and EEF2 were further shown to be stable candidate reference genes under the conditions tested. We found 8368 tissue-specific genes (TSGs), predominantly enriched in the reproductive system. Exploratory analysis of mammary tissue (dry-period vs. public lactating samples, confounded by batch effects) revealed mammary-enriched hub genes including LALBA; these findings are preliminary and require validation. Dynamic analysis across lactation stages (early, peak, mid-, late) identified candidate genes including SEC14L2 and ACSM3. Phenotypic data showed strong negative correlations between milk yield and protein/fat content, and a positive correlation with lactose content. However, causal or regulatory roles were not inferred due to lack of paired individual-level data. Cross-dataset comparisons are descriptive only, and are not key conclusions. In summary, this study lays the foundation for advancing research in lactation trait genetics and functional genomics in river buffalo, with novel reference genes and lactation stage-specific transcriptional dynamics as its main contributions. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
16 pages, 4335 KB  
Review
Research Advances in Pheromone Biosynthesis Regulation via the PBAN Signaling Pathway in Insects
by Yu Zhang, Zhitao Liu, Yan Yi, Hong Chen, Xia Wu, Guizhi Xu, Jingjun Yang and Zhiqiang Gao
Insects 2026, 17(5), 463; https://doi.org/10.3390/insects17050463 - 30 Apr 2026
Viewed by 9
Abstract
Nowadays, the application of insect sex pheromones in pest control technology has reached a relatively advanced technological maturity stage. However, the traditional research and development of sex pheromones requires a “one pest, one strategy” approach, which has drawbacks such as being time-consuming and [...] Read more.
Nowadays, the application of insect sex pheromones in pest control technology has reached a relatively advanced technological maturity stage. However, the traditional research and development of sex pheromones requires a “one pest, one strategy” approach, which has drawbacks such as being time-consuming and focused on a single control target. The insect sex pheromone synthesis pathway involves multiple molecular components that work together to promote the synthesis and release of sex pheromone from the pheromone gland. Elucidating the mechanisms underlying pheromone biosynthesis offers the potential to uncover universal strategies for pheromone development, thereby improving the efficiency and effectiveness of pest management. This study arranged knowledge of the upstream regulatory pathways and summarized the structure and function of the molecular components involved. We also investigated the divergence of neuropeptides and their receptors that regulate pheromone biosynthesis among different insect species from an evolutionary perspective. Future research should integrate multi-omics, bioinformatics, structural biology, and artificial intelligence technologies to elucidate the synthesis and regulatory processes of insect semiochemicals, develop specific dsRNA and small molecule inhibitors, and accelerate the transformation and application of related molecular targets into highly effective and green pesticides. Full article
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18 pages, 529 KB  
Review
Micro/Nanoplastics and Periodontitis: An Environmental Microbiology Perspective on Oral Retention and Systemic Risk
by Mark Cannon, John Peldyak and Paul Reynolds
Microorganisms 2026, 14(5), 1014; https://doi.org/10.3390/microorganisms14051014 - 30 Apr 2026
Viewed by 51
Abstract
Micro- and nanoplastics (MNPs) have now been detected in human blood, placenta, and arterial tissue, yet the oral cavity has received strikingly little mechanistic attention despite serving as a primary portal of environmental exposure and a local site of polymer generation from dental [...] Read more.
Micro- and nanoplastics (MNPs) have now been detected in human blood, placenta, and arterial tissue, yet the oral cavity has received strikingly little mechanistic attention despite serving as a primary portal of environmental exposure and a local site of polymer generation from dental and oral-care materials. This narrative review addresses that gap from an environmental microbiology perspective, synthesizing recent literature on periodontal disease, chronic low-grade inflammation, oral biofilms, dental materials, microbial–plastic interactions, and systemic chronic disease risk. Unlike prior reviews, we apply an explicit three-tier evidentiary framework (established, plausible, unproven) that distinguishes what is directly demonstrated from what is biologically plausible but unproven, and we situate the periodontal environment specifically as a particle-retention and inflammatory-amplification niche. The strongest direct oral evidence shows that human dental calculus harbors at least 26 microplastic types, dominated by polyamide (41.4%), polyethylene (32.7%), and polyurethane (7.0%). Polyethylene isolated from calculus induces cytotoxicity, apoptosis, impaired migration, NF-κB activation, and upregulation of IL-1β and IL-6 in human gingival fibroblasts. From a microbiological standpoint, oral organisms actively degrade methacrylate dental polymers, and the degradation products of these polymers reciprocally modulate oral bacterial virulence gene expression. Across experimental systems, MNPs activate oxidative stress, inflammasome signaling, macrophage polarization, and barrier dysfunction, pathways that overlap extensively with periodontal pathobiology. Adjacent environmental microbiology demonstrates that plastic-associated biofilms enhance extracellular polymeric substance production, quorum sensing, pathogen persistence, and antibiotic resistance gene transfer, supporting a plausible but not yet validated oral plastisphere within plaque and calculus. We argue that periodontitis should be reconceptualized as a chronically inflamed particle-processing interface that may increase local MNP retention, cellular reactivity, and systemic inflammatory spillover, with implications for cardiovascular, metabolic, and other chronic disease risk pathways. Current evidence does not yet prove that environmental MNP exposure causes human periodontitis, and that evidentiary boundary is maintained throughout. A priority research agenda is proposed, centered on contamination-controlled subgingival biomonitoring stratified by periodontal status, spatially resolved multi-species biofilm models, polymer source attribution, and longitudinal clinical studies linking oral plastic burden to inflammatory and systemic outcomes. Full article
(This article belongs to the Special Issue Oral Diseases and Microbiome)
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14 pages, 404 KB  
Review
Microbial Detoxification of Ochratoxin A in Food
by Elia Roncero, María J. Andrade and Micaela Álvarez
Foods 2026, 15(9), 1551; https://doi.org/10.3390/foods15091551 - 30 Apr 2026
Viewed by 67
Abstract
Food contamination by ochratoxin A (OTA) constitutes a significant threat to public health and global food safety and security, a challenge increasingly intensified by climate change. Due to the high thermal and chemical stability of OTA, traditional physical and chemical decontamination methods often [...] Read more.
Food contamination by ochratoxin A (OTA) constitutes a significant threat to public health and global food safety and security, a challenge increasingly intensified by climate change. Due to the high thermal and chemical stability of OTA, traditional physical and chemical decontamination methods often prove insufficient or detrimental to food quality. Consequently, microbial detoxification has emerged as a sustainable alternative. This review delves into the two primary biological mechanisms for OTA detoxification: physical adsorption—predominantly mediated by yeast and bacterial cell walls—and enzymatic biotransformation. Among the documented metabolic pathways, the hydrolysis of the amide bond by carboxypeptidases and amidohydrolases is recognised as the most reliable detoxification pathway. Conversely, alternative pathways, such as lactone ring opening, are hindered by their potential toxicity and chemical reversibility under acidic conditions. While various lactic acid bacteria, yeast, and filamentous mould species demonstrate high efficacy in OTA decontamination, their industrial implementation is currently limited by the complexity of food matrices and the lack of in vivo validation. The integration of multi-omics (proteomics and metabolomics), alongside CRISPR/Cas9 genome editing, is essential for identifying novel biocontrol agents. These precision biotechnological tools are fundamental for translating laboratory findings into industrial-scale OTA detoxification strategies. Full article
(This article belongs to the Special Issue Microbial Detoxification of Mycotoxins in Food)
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22 pages, 6175 KB  
Article
Accurate Identification of Ilex (Aquifoliaceae) Taxa Based on Leaf Morphology Using Deep Learning
by Lin Yang, Yizhe Zhao, Cheng Jin, Shichang Wu, Zeyu Lu, Mingzhuo Hao, Changwei Bi and Kewang Xu
Plants 2026, 15(9), 1365; https://doi.org/10.3390/plants15091365 - 29 Apr 2026
Viewed by 92
Abstract
Holly (Ilex L.) is a genus of woody dioecious plants with substantial ecological and economic value. However, its high species diversity and morphological similarity make accurate identification challenging. To address this, we constructed a multi-taxon Ilex leaf image dataset. We then trained [...] Read more.
Holly (Ilex L.) is a genus of woody dioecious plants with substantial ecological and economic value. However, its high species diversity and morphological similarity make accurate identification challenging. To address this, we constructed a multi-taxon Ilex leaf image dataset. We then trained six deep learning models—GoogLeNet, ResNet50, ResNet101, DenseNet121, DenseNet169, and EfficientNet-B3—using a unified PyTorch framework on cloud computing resources. Leaf images were preprocessed by background removal, resizing, cropping, and normalization. Model performance was evaluated using accuracy, F1-score, and Grad-CAM visualizations. Under an image-level data split that may overestimate generalization, all six models achieved over 99% classification accuracy on preprocessed leaf images under controlled laboratory conditions. DenseNet121 and DenseNet169 performed best, reaching 99.65% accuracy. Because images of the same leaf or same plant could appear in both training and test sets under this split, plant-level cross-validation is required to assess real-world generalizability. The reported accuracies represent an upper-bound estimate under image-level splitting. The framework offers a rapid and accurate tool for preliminary screening under controlled conditions, but its performance on raw field photographs and across different collection sites remains to be validated. Full article
(This article belongs to the Special Issue Origin and Evolution of the East Asian Flora (EAF)—2nd Edition)
22 pages, 1166 KB  
Review
Progress in Tissue Culture Techniques of Herbaceous Peony (Paeonia lactiflora Pall.): A Narrative Review
by Rouhan Qian, Xiaohua Shi, Xiaohui Wen, Jianghua Zhou, Keke Li, Kaiyuan Zhu and Huichun Liu
Horticulturae 2026, 12(5), 543; https://doi.org/10.3390/horticulturae12050543 - 29 Apr 2026
Viewed by 324
Abstract
Paeonia lactiflora Pall. (herbaceous peony) is a high-value ornamental and medicinal plant in China with considerable market potential. However, conventional propagation methods are limited by low multiplication rates and long production cycles, making it difficult to meet the demand for large-scale planting materials. [...] Read more.
Paeonia lactiflora Pall. (herbaceous peony) is a high-value ornamental and medicinal plant in China with considerable market potential. However, conventional propagation methods are limited by low multiplication rates and long production cycles, making it difficult to meet the demand for large-scale planting materials. As a key approach for rapid propagation, tissue culture techniques for P. lactiflora have achieved significant progress in recent years. This review summarizes advances in the tissue culture system for P. lactiflora over the past decade, focusing on major in vitro regeneration pathways (organogenesis and somatic embryogenesis) and crucial technical stages, including explant selection and culture environment optimization. Distinct from previous reviews that only introduce partial technical aspects of P. lactiflora tissue culture, this review comprehensively outlines the overall tissue culture system, analyses the current species-specific bottlenecks (browning, vitrification, rooting and acclimatization) with their underlying causes and proposes targeted strategies. Furthermore, future development trends are prospected by integrating emerging research directions, including molecular regulatory mechanisms and eco-adaptive breeding. This review aims to provide a theoretical foundation and technical support for obtaining propagule for commercial plantations and achieving multi-functional utilization of P. lactiflora. Full article
(This article belongs to the Special Issue Advances in Quality Regulation and Improvement of Ornamental Plants)
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14 pages, 2723 KB  
Article
Building a Local Multi-Marker eDNA Reference Database Reveals the Limitations of Public Repositories for Freshwater Fish Monitoring in the Three Gorges Reservoir
by Lang Xie, Yan Pu, Huatang Deng, Huiwu Tian, Dengqiang Wang, Xinbin Duan, Ziwei Shen and Yunfeng Li
Fishes 2026, 11(5), 264; https://doi.org/10.3390/fishes11050264 - 29 Apr 2026
Viewed by 65
Abstract
Environmental DNA (eDNA) metabarcoding has emerged as a powerful tool for biodiversity monitoring, yet its accuracy is fundamentally constrained by the completeness and taxonomic reliability of reference sequence databases. For the Three Gorges Reservoir (TGR), no integrated multi-marker eDNA reference library exists, hampering [...] Read more.
Environmental DNA (eDNA) metabarcoding has emerged as a powerful tool for biodiversity monitoring, yet its accuracy is fundamentally constrained by the completeness and taxonomic reliability of reference sequence databases. For the Three Gorges Reservoir (TGR), no integrated multi-marker eDNA reference library exists, hampering standardized fish conservation monitoring under the Yangtze River Ten-Year Fishing Ban. Here, we constructed a comprehensive, multi-marker eDNA reference database for the fish fauna of the TGR, encompassing mitochondrial 12S rRNA, 16S rRNA, and cytochrome c oxidase subunit I (COI) gene sequences from 173 specimens (120 species) collected between 2021 and 2024. After integrating publicly available sequences, the final database comprised 161 species. Then, we quantitatively compared species annotation performance between this local database and public repositories. Results showed that while public databases achieved higher nominal species coverage (94.67%), they exhibited critical deficiencies in annotation accuracy, correctly annotating only 77.97% (12S rRNA), 75.00% (16S rRNA), and 38.14% (COI) of sequences from shared species under controlled conditions. In contrast, the local database exhibited 92.37%, 93.10% and 100% annotation accuracy for the respective markers. Optimal interspecific Kimura 2-parameter (K2P) thresholds for species delimitation were 0.00448 (12S rRNA), 0.00531 (16S rRNA), and 0.00734 (COI). In addition, 15, 0, and 4 species pairs exhibited zero interspecific distance for 12S rRNA, 16S rRNA, and COI, respectively. These limitations reinforce the need for cautious interpretation of eDNA metabarcoding results and the integration of multiple markers or complementary nuclear loci. This study provides preliminary evidence that regionally curated, multi-marker reference libraries could improve taxonomic assignment reliability in eDNA metabarcoding compared to uncurated public repositories, providing a foundational resource for biodiversity conservation. Full article
(This article belongs to the Section Biology and Ecology)
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31 pages, 7297 KB  
Review
Advances in Functional Genomics of Disease Resistance in Cucumber (Cucumis sativus) and Translational Prospects for the Cucurbitaceae Family
by Zhipeng Wang, Fanqi Gao and Guangchao Yu
Genes 2026, 17(5), 522; https://doi.org/10.3390/genes17050522 - 29 Apr 2026
Viewed by 201
Abstract
Cucurbit crops—including cucumber (Cucumis sativus), watermelon (Citrullus lanatus), and melon (Cucumis melo)—are of major economic and nutritional importance worldwide. Yet their productivity and quality are severely compromised by foliar fungal diseases, particularly powdery mildew (PM), downy mildew [...] Read more.
Cucurbit crops—including cucumber (Cucumis sativus), watermelon (Citrullus lanatus), and melon (Cucumis melo)—are of major economic and nutritional importance worldwide. Yet their productivity and quality are severely compromised by foliar fungal diseases, particularly powdery mildew (PM), downy mildew (DM), and target leaf spot (TLS). While PM and DM have been extensively studied, TLS has emerged as an increasingly prevalent and damaging disease in key production regions, yet it remains comparatively understudied—especially with respect to its molecular basis and comparative pathobiology relative to PM and DM. Current reliance on chemical fungicides is hampered by escalating pathogen resistance and concerns over residual toxicity, whereas conventional breeding approaches face inherent limitations in pyramiding durable, broad-spectrum resistance against multiple pathogens. In this context, cucumber has emerged as a pivotal model species for dissecting foliar disease resistance mechanisms in cucurbits, supported by a high-quality reference genome, extensive resequencing datasets, diverse germplasm collections, and an efficient Agrobacterium-mediated transformation system. Despite these advantages, existing reviews predominantly address PM or DM resistance in isolation; comprehensive syntheses integrating TLS resistance advances—and critically, cross-disease comparisons of genetic architecture, transcriptional reprogramming, and defense signaling—are notably scarce. Furthermore, the translational pipeline—from gene discovery and functional validation to deployment in marker-assisted or genome-edited breeding—lacks systematic evaluation. Here, we provide a focused, cucumber-centered review that (i) synthesizes recent progress in mapping QTLs and GWAS loci, and characterizing key resistance-associated gene families (such as NLRs, RLKs, PR genes) conferring resistance to PM, DM, and TLS; (ii) integrates transcriptomic, epigenomic, and proteomic evidence to delineate conserved versus pathogen-specific host responses; (iii) highlights breakthroughs and unresolved questions in TLS resistance research, including the roles of novel susceptibility factors and non-canonical immune regulators; and (iv) critically assesses bottlenecks in translating resistance genes into practical breeding outcomes—such as linkage drag, functional redundancy, and genotype-by-environment interactions—and proposes empirically grounded strategies for accelerating molecular design of multi-disease-resistant cultivars. Collectively, this review aims to bridge fundamental insights with applied breeding goals, offering a conceptual and strategic framework for integrated management of foliar fungal diseases and the development of durable, broad-spectrum resistance in cucurbits. Full article
(This article belongs to the Special Issue Advancing Crop Quality with Genomics, Genetics and Biotechnology)
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