Search Results (48)

Peatlands store substantial amounts of carbon (C) in the form of peat, but are increasingly threatened by drought and shrub encroachment under climate warming. However, how peat decomposition and its temperature sensitivity (Q₁₀) vary with depth and plant litter input under these stressors remains poorly understood. We incubated peat from two depths with different degrees of decomposition, either alone or incubated with Sphagnum divinum shoots or Betula ovalifolia leaves, under five temperature levels and two moisture conditions in growth chambers. We found that drought and Betula addition increased CO₂ emissions in both peat layers, while Sphagnum affected only shallow peat. Deep peat alone or with Betula exhibited higher Q₁₀ than pure shallow peat. Drought increased the Q₁₀ of both depths’ peat, but this effect disappeared with fresh litter addition. The CO₂ production rate showed a positive but marginal correlation with microbial biomass carbon, and it displayed a rather similar responsive trend to warming as the microbial metabolism quotient. These results indicate that both deep and dry peat are more sensitive to warming, highlighting the importance of keeping deep peat buried and waterlogged to conserve existing carbon storage. Additionally, they further emphasize the necessity of Sphagnum moss recovery following vascular plant encroachment in restoring carbon sink function in peatlands. Full article

Soil carbon dynamics and microbial communities are critical to soil health. However, the specific effects of mulching on soil microbial community and carbon dynamics in semi-arid rainfed regions remain insufficiently understood. This study aims to identify optimal mulching practices that promote soil carbon sequestration and enhance soil microbial functionality. Mulching treatments were applied in furrows before maize sowing, including black plastic film (TB), white plastic film (TW), straw mulching without sowing (TC), and straw mulching with sowing (TG), and were compared with flat sowing without mulching (TN). Results revealed that TG treatment promoted soil carbon dynamics by increasing total carbon (9%), organic carbon (19%), microbial biomass carbon (100%), easily oxidized carbon (10%), particulate-associated carbon (77%), carbon stability index (7%), active carbon fraction (45%), dissolved carbon proportion (30%), and microbial quotient (34%) compared to TN. A higher abundance and composition of bacterial communities were observed compared to fungal communities. The highest bacterial abundance of Kaistobacter, iii1_15, Sinobacteraceae, and Xanthomonadaceae, and fungal abundance of unspecified fungi, Laiosphaeriaceae, and Sordariomycetes, with the dominant aerobic respiration metabolic pathway involved in organic matter decomposition, were observed in TG and TC. The results indicated that TG treatment most effectively promoted carbon fractions and microbial activity that could strengthen soil health. Full article

Karst regions (KRs) have created significant karst carbon sinks globally through the carbon cycling process involving “water-carbon dioxide-carbonate rock-biota”. Soil organic carbon (SOC) represents a crucial component of these carbon sinks. Microorganisms play a vital role in the soil carbon cycle, influencing the formation and preservation of SOC. Therefore, investigating the carbon metabolism of soil microorganisms in KRs is essential for clarifying the unique biogeochemical cycling mechanisms within these regions. In this paper, soils from karst regions (KRs), mixed regions (MRs) and non-karst regions (NKRs) were collected from citrus orchards in Mao Village, Karst Experimental Field, Guilin City, Guangxi Zhuang Autonomous Region, China. The ability to use different carbon sources was analyzed by Biolog-Eco microtiter plate technique; the number of microorganisms was detected by the plate colony counting method, and the microbial biomass was determined by the chloroform fumigation method. The results showed that the soil bacterial number (5.69 ± 0.39 × 10⁶ CFU/g), microbial biomass carbon (MBC) (608.24 ± 63.80 mg/kg), microbial quotient (SMQ) (3.45 ± 0.18%), and Shannon’s index (H′) (3.28 ± 0.05) of the KR were significantly higher than those of the NKR. The pH showed a significant positive correlation (p < 0.05) with the bacterial number and H′ (p < 0.05); SOC showed a highly significant positive correlation with bacterial number (p < 0.01), and a significant positive correlation with MBC, H′, and average well change development (AWCD) (p < 0.05). Total nitrogen (TN) showed a significant positive correlation with MBC (p < 0.05); available potassium (AK) showed a significant positive correlation with bacterial number and MBC (p < 0.05). Exchangeable calcium (Ca²⁺) demonstrated significant positive correlations with bacterial number, MBC, and H′ (p < 0.05). The above results indicate that soil bacterial number, carbon metabolic ability and diversity were highest in the KR. pH, SOC and exchangeable Ca²⁺ were the main influencing factors for the differentiation of soil microbial carbon metabolic diversity between the KR and NKR. Full article

The increasing challenges posed by climate change demand efficient strategies to mitigate soil degradation. Valorization of low-grade residual forestry biomass (acacia) into biochar could be used as a soil amendment strategy. A short-term incubation assay was conducted in forest soil, where the effects of biochar produced at two pyrolysis temperatures (450 °C and 550 °C) with varying particle sizes (S < 0.5 mm, M = [0.5; 3.15], L > 3.15 mm) and application rates (0, 3, 6 and 10% (w/w)) were assessed. Organic matter was analyzed through the water-soluble carbon, hot-water-extractable carbon, and microbial biomass. Microbial activity was evaluated by measuring the soil respiration and metabolic quotient. Biochar application increased the water-soluble carbon by 21 to 143% and the hot-water-extractable carbon by 27 to 137%, while decreasing the microbial biomass to 86%. The soil respiration and metabolic quotient increased in all the conditions, indicating an increase in microbial activity but low efficiency in carbon mineralization. This suggests the inefficient acclimatization of the microorganisms to biochar, lowering their ability to co-metabolize the recalcitrant carbon. Additionally, the potential adsorption of beneficial nutrients onto the biochar could have inhibited their release into the soil, hindering microbial growth. Increased biochar application rates resulted in adverse effects on microbial communities, indicating possible inhibitory effects on the soil biota. Full article

Water samples for bacterial microbiome studies undergo biomass concentration, DNA extraction, and taxonomic identification steps. Through benchmarking, we studied the applicability of skimmed milk flocculation (SMF) for bacterial enrichment, an adapted in-house DNA extraction protocol, and six 16S rRNA databases (16S-DBs). Surface water samples from two rivers were treated with SMF and vacuum filtration (VF) and subjected to amplicon or shotgun metagenomics. A microbial community standard underwent five DNA extraction protocols, taxonomical identification with six different 16S-DBs, and evaluation by the Measurement Integrity Quotient (MIQ) score. In SMF samples, the skimmed milk was metabolized by members of lactic acid bacteria or genera such as Polaromonas, Macrococcus, and Agitococcus, resulting in increased relative abundance (p < 0.5) up to 5.0 log fold change compared to VF, rendering SMF inapplicable for bacterial microbiome studies. The best-performing DNA extraction protocols were FastSpin Soil, the in-house method, and EurX. All 16S-DBs yielded comparable MIQ scores within each DNA extraction kit, ranging from 61–66 (ZymoBIOMICs) up to 80–82 (FastSpin). DNA extraction kits exert more bias toward the composition than 16S-DBs. This benchmarking study provided valuable information to inform future water metagenomic study designs. Full article

The mineralogical composition of the parent material, together with plant species and soil microorganisms, constitutes the foundational components of an ecosystem’s energy cycle. Afforestation in arid-semi arid regions plays a crucial role in preventing erosion and enhancing soil quality, offering significant economic and ecological benefits. This study evaluated the effects of afforestation and different parent materials on the physicochemical and microbiological properties of soils, including microbial basal respiration (MR), as well as how these changes in soil properties after 15 years influence plant growth. For this purpose, various soil physicochemical parameters, MR, soil microbial biomass carbon (C_mic), stoichiometry (microbial quotient = C_mic/C_org = qMic and metabolic quotient = MR/C_mic = qCO₂), and tree growth metrics such as height and diameter were measured. The results indicated that when the physicochemical and microbiological properties of soils from different bedrock types, along with the average values of tree growth parameters, were analyzed, afforestation areas with limestone bedrock performed better than those with andesite bedrock. Notably, sensitive microbial properties, such as C_mic, MR, and qMic, were positively influenced by afforestation. The highest values of C_mic (323 μg C g⁻¹) and MR (1.3 CO₂–C g⁻¹ h⁻¹) were recorded in soils derived from limestone. In contrast, the highest qCO₂ was observed in the control plots of soils with andesite parent material (7.14). Considering all the measured soil properties, the samples can be ranked in the following order: limestone sample (LS) > andesite sample (AS) > limestone control (LC) > andesite control (AC). Similarly, considering measured plant growth parameters were ranked as LS > AS. As a result, the higher plant growth capacity and carbon retention of limestone soil indicate that it has high microbial biomass and microbial activity. This study emphasizes the importance of selecting suitable parent material and understanding soil properties to optimize future afforestation efforts on bare lands. Full article

Soil salinity and drought are major environmental challenges that significantly affect soil functioning and soil organic matter (SOM) decomposition. Despite their importance, the combined effects of drought and salinity on residue decomposition are not well understood. This study addresses this gap by evaluating the decomposition of maize residue under salinity and drought stresses over a 75-day incubation period at 20 °C under controlled conditions. The experiment included two moisture levels: optimum moisture at 80% water-holding capacity (WHC) and drought conditions at 30% WHC, in both normal (ECe = 1.48 dS m⁻¹) and saline (ECe = 8 dS m⁻¹) soils, with 5 g DM kg⁻¹ soil maize residues mixed in. A control treatment without maize residue addition was also included. The results indicated that salinity stress reduced maize residue decomposition, as evidenced by lower soil respiration, decay constant, metabolic quotient (qCO₂), and soil extracellular enzyme activities. While drought did not affect total soil respiration in the presence of maize residue, it significantly decreased soil extracellular enzyme activities and decay constant rates. Combined drought and salinity stress further diminished maize residue decomposition, marked by reduced soil respiration, decay constant, microbial biomass carbon, and soil extracellular enzyme activities, while dissolved organic carbon (DOC) and qCO₂ increased significantly. Similarly, extracellular enzyme activities were significantly reduced under abiotic stresses and further diminished under combined stress conditions. In conclusion, the simultaneous occurrence of drought and salinity can have compounded detrimental effects on microbial functioning, particularly in the presence of fresh plant residues. Full article

Mining and metallurgy are the main sources of soil contamination with harmful metals, posing a significant threat to human health and ecosystems. River floodplains in the vicinity of metal mines or industrial plants are often subject to flooding with sediments containing heavy metals, which can be harmful to the soil ecosystem. This study aimed to investigate the microbial properties of the soil at a metal-contaminated site and to determine the significant relationships between the biological and chemical properties of the soil. The study site was located near the village of Gyöngyösoroszi, in the Mátra mountain region of Northwest Hungary. A phytoremediation experiment was conducted in a metal-polluted floodplain using willow and corn plantations. The soil basal respiration, substrate-induced respiration, soil microbial biomass carbon (MBC), acid phosphatase activities, and soil chemical properties were measured. The soil of the contaminated sites had significantly higher levels of As, Pb, Zn, Cu, Cd, and Ca, whereas the unpolluted sites had significantly higher levels of phosphorus and potassium. The substrate-induced respiration showed a positive correlation with MBC and negative correlations with the metabolic quotient (qCO₂). The soil plasticity index and phosphorus showed a positive correlation with MBC, whereas salinity and the presence of Cd, Pb, Zn, As, and Cu showed a negative correlation. Acid phosphomonoesterase activity negatively correlated with the plant-available phosphorus content and MBC, but was positively correlated with the contents of toxic elements, including cadmium, lead, zinc, arsenic, and copper. This study found a significant correlation between the qCO₂ and the toxic element content. This suggests that an enhanced metabolic quotient (qCO₂), together with a decreased MBC/SOC ratio, could be used to indicate the harmful effect of soil contamination by heavy metals in floodplain soils. Full article

Wildfires are a natural part of the dynamics of Mediterranean forest ecosystems. The fire patterns in the Mediterranean basin have been altered mainly due to changes in land use and climate change. In 2017, a wildfire in Yeste (Spain) burned 3200 hectares of two Mediterranean pine forests. We investigated the effects of burn severity and postfire salvage logging practices on vegetation and soil properties in four experimental areas distributed within the wildfire perimeter. These areas included unburned, low, high, and high burn severity with salvage logging, all located under Pinus halepensis Mill and Pinus pinaster Aiton stands. Salvage logging was applied 18 months after the fire. We established 72 circular plots (nine per treatment and pine species). We collected soil samples to analyze physicochemical and biological soil properties, including pH, electrical conductivity (EC), soil organic matter (SOM) content, carbon from microbial biomass (CBM), basal soil respiration (BSR), metabolic quotient (qCO₂), and two enzymatic activities: β-glucosidase (GLU) and phosphatase (PHP). To understand how vegetation changed after fire, we implemented three linear transects per plot to calculate α-diversity indices (richness, Shannon, and Simpson), vegetation coverage (COBV), fraction of bare soil (BSOIL), the number of postfire seedlings (NSeed) and their average height (Hm), and we grouped vegetation into different postfire adaptive strategies: facultative seeder (R+S+), obligate resprouter (R+S−), obligate seeder (R−S+), and non-fire-adapted (R−S−). We ran ANOVA and Tukey’s HSD post hoc tests to evaluate the differences between burn severity and salvage logging practices on the variables examined for each pine stand. We used PCA and correlation analysis to identify plant-soil interactions. Our results suggest that Pinus halepensis stands were more affected by the wildfire than Pinus pinaster stands due to the distinct characteristics of each species (morphology of the leaves, bark thickness, cone structure, etc.) and the significant differences observed in terms of pH, SOM, CBM, qCO₂, GLU, PHP, and Nseed. The proportion of obligate resprouter species was higher in Pinus halepensis stands, and the obligate seeder species were higher in Pinus pinaster stands. The study highlighted the importance of monitoring burn severity and postfire management practices to promote forest recovery and reduce wildfire risk. Limiting the negative impact of postfire salvage logging practices can enhance the resilience of vulnerable ecosystems. Full article

The stability of biochar is fundamental to its soil carbon (C) sequestration potential. The relative importance of chemical recalcitrance and the soil microbial community on biochar stability is still unclear. To unveil the question, we conducted a 60-day incubation to explore the stability of two rice-straw-derived biochars pyrolyzed at 300 and 500 °C (denoted as BS300 and BS500), as well as the relative contribution of the soil microbial community and biochar chemical recalcitrance to biochar stability in a poplar plantation soil. Biochar-derived cumulative carbon dioxide (CO₂) emission was estimated to be 41.3 and 6.80 mg C kg⁻¹, accounting for 0.73 and 0.11% of the amended biochar-derived organic C (OC) in BS300 and BS500 treatments, respectively. The mean retention time (MRT) estimated by double-exponential model fitting was 49.4 years for BS300 and 231 years for BS500. Compared to control, BS300 and BS500 decreased β-D-glucosidase activity by 20.9 and 18.0%, while they decreased phenol oxidase activity by 31.8 and 18.9%, respectively. Furthermore, BS300 increased the soil microbial metabolic quotient (qCO₂) by 155%, but BS500 decreased it by 13.4%. In addition, BS300 resulted in a 520% higher biochar-derived hot-water-extractable OC than BS500. Partial least-squares path modeling (PLSPM) showed that the path efficients of biochar’s chemical recalcitrance and microbial qCO₂ were 0.52 and 0.25, respectively, and that of the soil microbial activity is neglected. We conclude from this short-term study that chemical recalcitrance imposed a greater effect than soil microbial community on biochar stability. Full article

The influence of the quantities and ratios of dissolved organic carbon (DOC) and dissolved nitrogen (DN) generated by different chemical quality classes of organic residues on soil microbial processes in the decomposition process is not well understood. If the DOC-to-DN ratio (hereafter, ratio) of the substrate is close to that of the microbial C-to-N ratio, then the DOC-and-DN stoichiometry of the substrate is balanced, resulting in enhanced microbial processing, i.e., carbon use efficiency (CUE). Uncertainty exists about the influence of DN and the DOC-to-DN ratio on CUE, particularly in high-quality class (high nitrogen) residue-treated soils. A long-term field experiment was used to explore the effect of the annual application of residues of different quality classes on decomposition processes, focusing on the effects of DOC, DN, and the ratio on the microbial metabolic quotient (qCO₂), which is the inverse of CUE. DOC and DN were extracted from soils during the 13th year of the experiment. Soils treated with high-quality class groundnut residue (high-nitrogen) had higher DN (5.4 ± 2.6 mg N kg⁻¹) and a lower ratio (6.8 ± 2.6) than those treated with medium-quality (medium-nitrogen) tamarind (3.0 ± 0.6 and 10.7 ± 2.2, respectively). The positive influence of DN on qCO₂ (R² = 0.49 *) in groundnut-treated soil suggested that the high bioavailability of DN reduced CUE due to imbalanced DOC-and-DN stoichiometry. This contradicted earlier published findings on high-nitrogen residues which had balanced DOC-and-DN stoichiometry. The positive influence of the ratio on qCO₂ under the tamarind-treated soil (R² = 0.60 *) indicated that its balanced DOC-and-DN stoichiometry enhanced CUE. High-quality class organic residues can result in either higher or lower CUE than their lower-quality class counterparts depending on whether the resulting DOC-and-DN stoichiometry is balanced or imbalanced. Full article

The ingestion of vegetables grown in soils or in cultivation substrate contaminated with heavy metals (HMs) and irrigated with wastewater is a potential problem for human health and food quality. The increasing disappearance of fertile soils has led to an increase in the practice of soil-less cultivation and the use of growing substrates, but the choice of the right substrate and its sustainable management is essential to ensure the production of quality and safe vegetables for all while minimizing the impact on the environment and human health. The present study measures the combined effects of different HMs (V, Ni, Cd, Pb, Cu, Cr) on microbial biomass, respiration, and enzyme activities (EAs) in an artificially contaminated commercial growing substrate. The concentrations of HMs were estimated by Atomic Absorption Spectroscopy; enzyme activities via spectrophotometric assays; respiration via CO₂ evolution; and microbial biomass C via the fumigation extraction method. The results showed a reduction in both respiration and all enzyme activities. The reduction in EAs highlighted a notable influence on microorganism-mediated C, N, S, and P cycles, strongly reducing substrate health. Microbial biomass did not show significant differences, but the increase in the metabolic quotient highlighted how the toxicity of HMs reduces the energy use efficiency of microbial metabolic processes. Full article

Hop (Humulus lupulus L.) leaves are rich in nutrients, particularly nitrogen (N). After harvest, they can be recycled through composting for use as a soil amendment. In this study, we report the effect of composts obtained from mixtures of hop leaves with other organic materials (wheat straw, farmyard manure, and ash from hop stems) at different ratios on soil properties and microbial diversity. Data on total N, total organic carbon (TOC), microbial N (Mic-N), microbial C (Mic-C), soil basal respiration (SBR), metabolic quotient (qCO₂), Mic-C/TOC ratio, acid phosphatase activity (APA), microbial density, and species identification were assessed after each one of the two growing seasons of potted lettuce (Lactuca sativa L.). The diversity of microbial species was evaluated using Simpson and Shannon diversity indexes, and the interactions between soil properties and the microbial community were explored. Higher microbial activity was found among the soils amended with leaves plus straw (HS), which exhibited higher levels of TOC, APA, Mic-N, and total N in the first growing cycle and higher levels of Mic-C, Mic-C/TOC, SBR, TOC, and Mic-N in the second growing cycle. Fungi identified belong to the Ascomycota and Zygomycota phyla, while bacteria belong to the Actinobacteria, Bacillota, Bacteroidetes, Firmicutes, and Proteobacteria phyla. Differences in the prevalent microbial genera were observed between compost treatments and growing cycles. Correlation analysis revealed significant relationship between soil bacteria and fungi abundance and higher levels of N and C in the soils, indicating the relevance of specific microbial genera, such Acrostalagmus, Doratomyces, Talaromyces, and Aspergillus fungi, as well as Gordonia and Bacillus bacteria. Overall, the results indicate that hop leaves-based compost, particularly with a higher proportion of leaves and straw, influenced the composition of the soil microbial community, ultimately enhancing soil N availability for plant development. Full article

We conducted a short-term laboratory soil warming incubation experiment, sampling both warmed and un-warmed soils from a subtropical plantation in southeastern China, incubating them at 20 °C, 30 °C, and 40 °C. Our aim was to study the SOC mineralization response to increasing temperatures. Our findings revealed that the temperature sensitivity (Q₁₀) of SOC mineralization to short-term experimental warming varied between the warmed soil and the un-warmed soil. The Q₁₀ of the un-warmed soil escalated with the temperature treatment (20–30 °C: 1.31, 30–40 °C: 1.63). Conversely, the Q₁₀ of the warmed soil decreased (20–30 °C: 1.57, 30–40 °C: 1.41). Increasing temperature treatments decreased soil substrate availability (dissolved organic C) in both un-warmed and warmed soil. The C-degrading enzyme in un-warmed soil and warmed soil had different trends at different temperatures. In addition, warming decreased soil microbial biomass, resulting in a decrease in the total amount of phospholipid fatty acids (PLFAs) and a decrease in the abundance of fungi and Gram-negative bacteria (GN) in both un-warmed and warmed soil. The ratio of fungal to bacterial biomass (F:B) in un-warming soil was significantly higher than that in warmed soil. A drop in the microbial quotient (qMBC) coupled with a rise in the metabolic quotient (qCO₂) indicated that warming amplified microbial respiration over microbial growth. The differential Q₁₀ of SOC mineralization in un-warmed and warmed soil, in response to temperature across varying soil, can primarily be attributed to shifts in soil dissolved organic C (DOC), alterations in C-degrading enzyme activities, and modifications in microbial communities (F:B). Full article

Processes of N transformation in soil as affected by application of the three kinds of urea fertilizers, conventional urea (U), humate-coated urea (U_HA), and urea treated with the urease inhibitor NBPT (U_UI), are examined in a model laboratory experiment. Effects of urea fertilizers on soil chemical (content of water-extractable N-NH₄ and N-NO₃), and microbiological properties (rate of actual and potential N₂O emission, basal and substrate-induced respiration, microbial biomass C, emission of ethylene) are focused to answer the following questions: (i) whether humate-coated urea has the ability to decrease N losses in soil; and (ii) how it affects soil biological activity comparable to synthetic urease inhibitor. The results showed that U_HA demonstrated advantages comparable to U in its ability to decrease N losses in soil: it increased N-NH₄ content by 35%, reduced nitrate content by 9%, and decreased N₂O emissions by 50%. U_HA promoted basal soil respiration by 10% and the specific activity of the soil microbial community by 7%, providing the highest metabolic quotient qCO₂. Comparably to NBPT-treated U, U_HA mainly shows intermediate results between U-UI and conventional U. Considering the low cost of raw humates, U-HA can be regarded as a promising tool to decrease N losses in soils. Full article