Skip to Content

272 Results Found

  • Review
  • Open Access
68 Citations
13,386 Views
30 Pages

Inhibitors of SARS-CoV-2 Main Protease (Mpro) as Anti-Coronavirus Agents

  • Agnieszka Zagórska,
  • Anna Czopek,
  • Monika Fryc and
  • Jakub Jończyk

The main protease (Mpro) of SARS-CoV-2 is an essential enzyme that plays a critical part in the virus’s life cycle, making it a significant target for developing antiviral drugs. The inhibition of SARS-CoV-2 Mpro has emerged as a promising appr...

(This article belongs to the Special Issue Advances in Protein-Ligand Interactions: From Structure, Function to Applications)
  • Article
  • Open Access
18 Citations
4,948 Views
17 Pages

Computational Simulation of HIV Protease Inhibitors to the Main Protease (Mpro) of SARS-CoV-2: Implications for COVID-19 Drugs Design

  • Wei Yu,
  • Xiaomin Wu,
  • Yizhen Zhao,
  • Chun Chen and ,
  • Zhiwei Yang,
  • Xiaochun Zhang,
  • Jiayi Ren,
  • Yueming Wang,
  • Changwen Wu and
  • Xiaohui Yuan
  • + 10 authors+ 5 authors

5 December 2021

SARS-CoV-2 is highly homologous to SARS-CoV. To date, the main protease (Mpro) of SARS-CoV-2 is regarded as an important drug target for the treatment of Coronavirus Disease 2019 (COVID-19). Some experiments confirmed that several HIV protease inhibi...

(This article belongs to the Section Medicinal Chemistry)
  • Article
  • Open Access
10 Citations
5,810 Views
19 Pages

Identification of SARS-CoV-2 Main Protease (Mpro) Cleavage Sites Using Two-Dimensional Electrophoresis and In Silico Cleavage Site Prediction

  • Noémi Miltner,
  • Gergő Kalló,
  • Éva Csősz,
  • Márió Miczi and ,
  • Tibor Nagy,
  • Mohamed Mahdi,
  • János András Mótyán and
  • József Tőzsér
  • + 3 authors+ 0 author

6 February 2023

The main protease (Mpro) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) plays a crucial role in its life cycle. The Mpro-mediated limited proteolysis of the viral polyproteins is necessary for the replication of the virus, and cleava...

(This article belongs to the Section Molecular Microbiology)
  • Article
  • Open Access
402 Views
18 Pages

Repurposing Thiazole/Benzothiazole-Based Thiazolidinone Derivatives as SARS-CoV-2 Main Protease (Mpro) Inhibitors: An Integrated Computational and Experimental Study

  • Anthi Petrou,
  • Aliki Papadimitriou-Tsantarliotou,
  • Hathaichanok Chuntakaruk,
  • Leentje Persoons and ,
  • Thanyada Rungrotmongkol,
  • Dominique Schols,
  • Athina Geronikaki,
  • Ioannis S. Vizirianakis and
  • Steven De Jonghe
  • + 4 authors+ 0 author

24 September 2026

Background/Objectives: SARS-CoV-2, the causative agent of COVID-19, relies on its main protease (Mpro) for viral replication, making this enzyme an attractive target for antiviral drug development. In the present study, we investigated whether a libr...

(This article belongs to the Special Issue Feature Papers in BioChem, 3rd Edition)
  • Article
  • Open Access
528 Views
28 Pages

Identification of Potential SARS-CoV-2 Main Protease (MPro) Inhibitors Through Pharmacophore Modeling, Molecular Docking, and Molecular Dynamics Simulation Approaches

  • Mohd Yasir Khan,
  • Farah Maarfi,
  • Abid Ullah Shah,
  • Nithyadevi Duraisamy and ,
  • Mohammed Cherkaoui and
  • Maged Gomaa Hemida
  • + 1 author+ 0 author

27 August 2026

The main protease (MPro) of coronaviruses (CoVs) is an essential enzyme involved in viral replication and represents an attractive target for antiviral drug discovery. Based on the similar binding pocket residues within the MPro of different CoVs, th...

(This article belongs to the Special Issue Computer-Aided Drug Discovery: Computational Chemistry and Cheminformatics)
  • Article
  • Open Access
780 Views
19 Pages

The Middle East Respiratory Syndrome coronavirus (MERS-CoV) remains a significant global health concern due to the absence of approved antiviral therapeutics. In this study, we developed a ligand-based machine learning framework to identify potential...

(This article belongs to the Special Issue Artificial Intelligence in Molecular Biomarker Screening)
  • Article
  • Open Access
1,079 Views
19 Pages

Identifying and Evaluating Flavonoids as Potential Inhibitors of SARS-CoV-2 Main Protease (Mpro/3CL) Through Docking and Molecular Dynamics

  • Getulio Flores-Tlalpa,
  • Lenin Domínguez-Ramírez,
  • Luis Márquez-Domínguez,
  • Julio Reyes-Leyva and ,
  • Paulina Cortés-Hernández,
  • Fabiola Domínguez,
  • Jesús Hernández,
  • Irma Herrera-Camacho and
  • Gerardo Santos-López
  • + 4 authors+ 0 author

Although the acute phase of the SARS-CoV-2 pandemic has subsided, the continued emergence of viral variants underscores the need for structurally diverse antiviral inhibitors. In this study, molecular docking followed by molecular dynamics (300 ns) s...

  • Review
  • Open Access
60 Citations
10,384 Views
20 Pages

Coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome 2 (SARS-CoV-2), has been one of the most devastating pandemics of recent times. The lack of potent novel antivirals had led to global health crises; however, emergen...

(This article belongs to the Section Biochemistry)
  • Article
  • Open Access
10 Citations
4,414 Views
16 Pages

Leveraging SARS-CoV-2 Main Protease (Mpro) for COVID-19 Mitigation with Selenium-Based Inhibitors

  • Viviana De Luca,
  • Andrea Angeli,
  • Alessio Nocentini,
  • Paola Gratteri and ,
  • Silvia Pratesi,
  • Damiano Tanini,
  • Vincenzo Carginale,
  • Antonella Capperucci,
  • Claudiu T. Supuran and
  • Clemente Capasso
  • + 5 authors+ 0 author

The implementation of innovative approaches is crucial in an ongoing endeavor to mitigate the impact of COVID-19 pandemic. The present study examines the strategic application of the SARS-CoV-2 Main Protease (Mpro) as a prospective instrument in the...

(This article belongs to the Special Issue Editorial Board Members’ Collection Series: "Enzyme Inhibition")
  • Article
  • Open Access
67 Citations
8,458 Views
17 Pages

Microbial Natural Products as Potential Inhibitors of SARS-CoV-2 Main Protease (Mpro)

  • Ahmed M. Sayed,
  • Hani A. Alhadrami,
  • Ahmed O. El-Gendy,
  • Yara I. Shamikh and ,
  • Lassaad Belbahri,
  • Hossam M. Hassan,
  • Usama Ramadan Abdelmohsen and
  • Mostafa E. Rateb
  • + 3 authors+ 0 author

The main protease (Mpro) of the newly emerged severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was subjected to hyphenated pharmacophoric-based and structural-based virtual screenings using a library of microbial natural products (>24,...

(This article belongs to the Special Issue Microbial Secondary Metabolites and Biotechnology)
  • Article
  • Open Access
6 Citations
4,595 Views
20 Pages

Autochthonous Peruvian Natural Plants as Potential SARS-CoV-2 Mpro Main Protease Inhibitors

  • Maria Nuria Peralta-Moreno,
  • Vanessa Anton-Muñoz,
  • David Ortega-Alarcon,
  • Ana Jimenez-Alesanco and ,
  • Sonia Vega,
  • Olga Abian,
  • Adrian Velazquez-Campoy,
  • Timothy M. Thomson,
  • José Manuel Granadino-Roldán and
  • Jaime Rubio-Martinez
  • + 6 authors+ 1 author

13 April 2023

Over 750 million cases of COVID-19, caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), have been reported since the onset of the global outbreak. The need for effective treatments has spurred intensive research for therapeuti...

(This article belongs to the Section Natural Products)
  • Article
  • Open Access
11 Citations
5,495 Views
18 Pages

29 March 2023

The rapid spread of the coronavirus disease 2019 (COVID-19) resulted in serious health, social, and economic consequences. While the development of effective vaccines substantially reduced the severity of symptoms and the associated deaths, we still...

  • Article
  • Open Access
46 Citations
6,308 Views
22 Pages

In Silico Mining of Terpenes from Red-Sea Invertebrates for SARS-CoV-2 Main Protease (Mpro) Inhibitors

  • Mahmoud A. A. Ibrahim,
  • Alaa H. M. Abdelrahman,
  • Tarik A. Mohamed,
  • Mohamed A. M. Atia and ,
  • Montaser A. M. Al-Hammady,
  • Khlood A. A. Abdeljawaad,
  • Eman M. Elkady,
  • Mahmoud F. Moustafa,
  • Faris Alrumaihi and
  • Mohamed-Elamir F. Hegazy
  • + 9 authors+ 4 authors

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent for the COVID-19 pandemic, which generated more than 1.82 million deaths in 2020 alone, in addition to 83.8 million infections. Currently, there is no antiviral medic...

(This article belongs to the Special Issue Computational Answers to Biomolecular Recognition Problems)
  • Review
  • Open Access
65 Citations
7,301 Views
15 Pages

Advances in the Development of SARS-CoV-2 Mpro Inhibitors

  • Laura Agost-Beltrán,
  • Sergio de la Hoz-Rodríguez,
  • Lledó Bou-Iserte,
  • Santiago Rodríguez and ,
  • Adrián Fernández-de-la-Pradilla and
  • Florenci V. González
  • + 1 author+ 0 author

14 April 2022

Since the outbreak of COVID-19, one of the strategies used to search for new drugs has been to find inhibitors of the main protease (Mpro) of the virus SARS-CoV-2. Initially, previously reported inhibitors of related proteases such as the main protea...

(This article belongs to the Special Issue Featured Papers in Medicinal Chemistry)
  • Article
  • Open Access
6 Citations
2,122 Views
20 Pages

29 June 2023

The SARS-CoV-2 main protease (Mpro) is essential for the life cycle of the COVID-19 virus. It cleaves the two polyproteins at 11 positions to generate mature proteins for virion formation. The cleavage site on these polyproteins is known to be Leu-Gl...

(This article belongs to the Section Human Virology and Viral Diseases)
  • Article
  • Open Access
79 Citations
8,407 Views
17 Pages

Structural and Biochemical Analysis of the Dual Inhibition of MG-132 against SARS-CoV-2 Main Protease (Mpro/3CLpro) and Human Cathepsin-L

  • Elisa Costanzi,
  • Maria Kuzikov,
  • Francesca Esposito,
  • Simone Albani and ,
  • Nicola Demitri,
  • Barbara Giabbai,
  • Marianna Camasta,
  • Enzo Tramontano,
  • Giulia Rossetti and
  • Paola Storici
  • + 6 authors+ 1 author

29 October 2021

After almost two years from its first evidence, the COVID-19 pandemic continues to afflict people worldwide, highlighting the need for multiple antiviral strategies. SARS-CoV-2 main protease (Mpro/3CLpro) is a recognized promising target for the deve...

(This article belongs to the Collection Feature Papers in Molecular Pharmacology)
  • Article
  • Open Access
46 Citations
7,860 Views
14 Pages

Antiviral Effects of Artemisinin and Its Derivatives against SARS-CoV-2 Main Protease: Computational Evidences and Interactions with ACE2 Allelic Variants

  • Riadh Badraoui,
  • Mongi Saoudi,
  • Walid S. Hamadou,
  • Salem Elkahoui and ,
  • Arif J. Siddiqui,
  • Jahoor M. Alam,
  • Arshad Jamal,
  • Mohd Adnan,
  • Abdel M. E. Suliemen and
  • Hmed Ben-Nasr
  • + 8 authors+ 3 authors

22 January 2022

Fighting against the emergent coronavirus disease (COVID-19) remains a big challenge at the front of the world communities. Recent research has outlined the potential of various medicinal herbs to counteract the infection. This study aimed to evaluat...

(This article belongs to the Special Issue Antiviral Compounds in Medicinal Plants)
  • Article
  • Open Access
18 Citations
5,554 Views
14 Pages

A Computational Study to Identify Potential Inhibitors of SARS-CoV-2 Main Protease (Mpro) from Eucalyptus Active Compounds

  • Ibrahim Ahmad Muhammad,
  • Kanikar Muangchoo,
  • Auwal Muhammad,
  • Ya’u Sabo Ajingi and ,
  • Ibrahim Yahaya Muhammad,
  • Ibrahim Dauda Umar and
  • Abubakar Bakoji Muhammad
  • + 2 authors+ 0 author

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was found to be a severe threat to global public health in late 2019. Nevertheless, no approved medicines have been found to inhibit the virus effectively. Anti-malarial and antiviral medic...

(This article belongs to the Special Issue Computation to Fight SARS-CoV-2 (CoVid-19))
  • Article
  • Open Access
12 Citations
4,724 Views
15 Pages

The Corona Virus Infectious Disease-2019 (COVID-19) outbreak originated at Wuhan, China, in December 2019. It has already spread rapidly and caused more than 6.5 million deaths worldwide. Its causal agent is a beta-coronavirus named SARS-CoV-2. Many...

(This article belongs to the Special Issue Inhibitors of Key Targets of SARS-CoV-2 and Other Coronaviruses)
  • Review
  • Open Access
4 Citations
2,882 Views
29 Pages

10 June 2025

Coronaviruses (CoVs) have recently emerged as significant causes of respiratory disease outbreaks, with the novel coronavirus pneumonia of 2019, known as COVID-19, being highly infectious and triggered by severe acute respiratory syndrome coronavirus...

(This article belongs to the Section Chemical and Molecular Sciences)
  • Article
  • Open Access
7 Citations
2,409 Views
22 Pages

Human Coronavirus 229E Infection Inactivates Pyroptosis Executioner Gasdermin D but Ultimately Leads to Lytic Cell Death Partly Mediated by Gasdermin E

  • Xavier Martiáñez-Vendrell,
  • Jonna Bloeme-ter Horst,
  • Roy Hutchinson,
  • Coralie Guy and ,
  • Andrew G. Bowie and
  • Marjolein Kikkert
  • + 1 author+ 0 author

1 June 2024

Human coronavirus 229E (HCoV-229E) is associated with upper respiratory tract infections and generally causes mild respiratory symptoms. HCoV-229E infection can cause cell death, but the molecular pathways that lead to virus-induced cell death as wel...

(This article belongs to the Section General Virology)
  • Review
  • Open Access
1 Citations
1,950 Views
51 Pages

Targeting SARS-CoV-2 Non-Structural Proteins: A Blueprint for Next-Generation Small-Molecule Coronavirus Antivirals

  • Exequiel O. J. Porta,
  • Dana F. AlKharboush,
  • Lauren Jackson,
  • Felix Pang and ,
  • Aylin Darin,
  • Joy Louka,
  • Mohammed Quamruzzaman,
  • Xinyue Shi,
  • Geoffrey Wells and
  • Frank Kozielski
  • + 5 authors+ 0 author

The SARS-CoV-2 non-structural proteome remains the most clinically validated and strategically important landscape for direct-acting small-molecule antiviral drug discovery. The success of inhibitors targeting the main protease (Mpro, Nsp5) and RNA-d...

(This article belongs to the Special Issue Novel Therapeutic Agents and Innovative Delivery Systems Against Infectious Diseases)
  • Article
  • Open Access
5 Citations
2,595 Views
21 Pages

Marine-Derived Peptides from Phaeodactylum tricornutum as Potential SARS-CoV-2 Mpro Inhibitors: An In Silico Approach

  • David Mauricio Cañedo-Figueroa,
  • Marco Antonio Valdez-Flores,
  • Claudia Desireé Norzagaray-Valenzuela,
  • Loranda Calderón-Zamora and ,
  • Ángel Radamés Rábago-Monzón,
  • Josué Camberos-Barraza,
  • Alma Marlene Guadrón-Llanos,
  • Alberto Kousuke De la Herrán-Arita,
  • Verónica Judith Picos-Cárdenas and
  • Juan Fidel Osuna-Ramos
  • + 13 authors+ 8 authors

The ongoing threat of viral pandemics such as COVID-19 highlights the urgent need for novel antiviral therapeutics targeting conserved viral proteins. In this study, peptides of 10–30 kDa derived from the marine diatom Phaeodactylum tricornutum...

(This article belongs to the Special Issue Advances in Antimicrobial Treatment)
  • Article
  • Open Access
636 Views
16 Pages

Maraviroc Inhibits SARS-CoV-2 Through Variant-Dependent Effects on Viral Entry and Mpro Activity Using Single-Round Infectious Particle and Virus-like Particle Models

  • Uyen Nguyen Phuong Le,
  • Po-Ju Chen,
  • Li-Wei Chu,
  • Jane Cynthia Arifin and ,
  • Chih-Hao Chen,
  • Yu-Hsuan Chen,
  • Wen-Chi Su,
  • Po-Ren Hsueh,
  • Yueh-Hsin Ping and
  • Cheng-Wen Lin
  • + 5 authors+ 0 author

19 August 2026

Maraviroc (MVC), a CCR5 antagonist, has been proposed as a potential antiviral agent against SARS-CoV-2; however, its mechanism of action across viral variants remains unclear. Here, we evaluated the antiviral activity of MVC against SARS-CoV-2 wild-...

(This article belongs to the Special Issue Emerging Concepts in SARS-CoV-2 Biology and Pathology, 3rd Edition)
  • Article
  • Open Access
764 Views
33 Pages

22 August 2026

The emergence of resistance-associated mutations in coronavirus main protease (Mpro) poses a significant challenge to the development of broad-spectrum antiviral therapeutics. In this study, we improved and accelerated a mutation-aware machine learni...

(This article belongs to the Special Issue Computational Approaches for Drug and Protein Design)
  • Proceeding Paper
  • Open Access
1,900 Views
9 Pages

Synthesis of New bis-furanyl-pyrrolo[3,4-b]pyridin-5-ones via the Ugi-Zhu Reaction and Docking Studies on the Main Protease (MPro) from SARS-CoV-2

  • Ivette Morales-Salazar,
  • Sandra L. Castañón-Alonso,
  • Daniel Canseco-González,
  • Erik Díaz-Cervantes and ,
  • Eduardo González-Zamora and
  • Alejandro Islas-Jácome
  • + 1 author+ 0 author

14 November 2021

The synthesis of five new bis-furanyl-pyrrolo[3,4-b]pyridin-5-ones in 30 to 40% yields through a domino sequence based on the Ugi-Zhu three-component reaction is described. Then, on the main protease MPro (PDB: 6lu7) from the SARS-CoV-2, the synthesi...

(This article belongs to the Proceedings of The 25th International Electronic Conference on Synthetic Organic Chemistry)
  • Proceeding Paper
  • Open Access
1 Citations
2,266 Views
14 Pages

The Thiadiazole Ring (THD) Is a Building Block for Potential Inhibitors of the SARS-CoV-2 Main Protease (Mpro): Theoretical Look into the Structure, Reactivity, and Binding Profile of Three 1,3,4-THD Derivatives toward Mpro

  • Dileep Chikkur Shanthakumar,
  • Lohith Tumakuru Nagarajappa,
  • Bienfait Kabuyaya Isamura,
  • Mofeli Benedict Leoma and ,
  • Kabelo Phuti Mokgopa,
  • Sridhar Mandayam Anandalwar,
  • Sahana Doreswamy and
  • Srikantamurthy Ningaiah
  • + 3 authors+ 0 author

21 December 2023

Thiadiazole (THD) derivatives are famous for their exceptional chemical properties and versatile biological activities. In this work, we report computational investigations of the structure, reactivity, and binding affinity of three 1,3,4-THD derivat...

(This article belongs to the Proceedings of Eng. Proc., 2023, RAiSE-2023)
  • Article
  • Open Access
3 Citations
1,890 Views
28 Pages

The SARS-CoV-2 main protease (Mpro), essential for viral replication, remains a prime target for antiviral drug design against COVID-19 and related coronaviruses. In this study, we present a systematic investigation into the molecular determinants of...

(This article belongs to the Special Issue Fundamental Aspects of Chemical Bonding—2nd Edition)
  • Article
  • Open Access
28 Citations
5,885 Views
25 Pages

Exploring the Therapeutic Potential of Petiveria alliacea L. Phytochemicals: A Computational Study on Inhibiting SARS-CoV-2’s Main Protease (Mpro)

  • Md. Ahad Ali,
  • Humaira Sheikh,
  • Muhammad Yaseen,
  • Md Omar Faruqe and ,
  • Ihsan Ullah,
  • Neeraj Kumar,
  • Mashooq Ahmad Bhat and
  • Md. Nurul Haque Mollah
  • + 3 authors+ 0 author

The outbreak of SARS-CoV-2, also known as the COVID-19 pandemic, is still a critical risk factor for both human life and the global economy. Although, several promising therapies have been introduced in the literature to inhibit SARS-CoV-2, most of t...

(This article belongs to the Section Computational and Theoretical Chemistry)
  • Article
  • Open Access
99 Citations
5,520 Views
13 Pages

Clean Grinding Technique: A Facile Synthesis and In Silico Antiviral Activity of Hydrazones, Pyrazoles, and Pyrazines Bearing Thiazole Moiety against SARS-CoV-2 Main Protease (Mpro)

  • Sraa Abu-Melha,
  • Mastoura M. Edrees,
  • Sayed M. Riyadh,
  • Mohamad R. Abdelaziz and ,
  • Abdo A. Elfiky and
  • Sobhi M. Gomha
  • + 1 author+ 0 author

6 October 2020

A novel series of some hydrazones bearing thiazole moiety were generated via solvent-drop grinding of thiazole carbohydrazide 2 with various carbonyl compounds. Also, dehydrative-cyclocondensation of 2 with active methylene compounds or anhydrides ga...

(This article belongs to the Section Organic Chemistry)
  • Article
  • Open Access
25 Citations
5,181 Views
14 Pages

Anti-Inflammatory, Antiallergic, and COVID-19 Main Protease (Mpro) Inhibitory Activities of Butenolides from a Marine-Derived Fungus Aspergillus terreus

  • Ibrahim Seyda Uras,
  • Sherif S. Ebada,
  • Michal Korinek,
  • Amgad Albohy and ,
  • Basma S. Abdulrazik,
  • Yi-Hsuan Wang,
  • Bing-Hung Chen,
  • Jim-Tong Horng,
  • Wenhan Lin and
  • Belma Konuklugil
  • + 6 authors+ 1 author

In December 2020, the U.K. authorities reported to the World Health Organization (WHO) that a new COVID-19 variant, considered to be a variant under investigation from December 2020 (VUI-202012/01), was identified through viral genomic sequencing. Al...

(This article belongs to the Special Issue Marine Natural Product Chemistry: A Themed Issue in Honor of Professor Peter Proksch on His Research Career)
  • Article
  • Open Access
2 Citations
2,922 Views
17 Pages

Shedding Light on Dark Chemical Matter: The Discovery of a SARS-CoV-2 Mpro Main Protease Inhibitor through Intensive Virtual Screening and In Vitro Evaluation

  • Maria Nuria Peralta-Moreno,
  • Yago Mena,
  • David Ortega-Alarcon,
  • Ana Jimenez-Alesanco and ,
  • Sonia Vega,
  • Olga Abian,
  • Adrian Velazquez-Campoy,
  • Timothy M. Thomson,
  • Marta Pinto and
  • Jaime Rubio-Martinez
  • + 8 authors+ 3 authors

The development of specific antiviral therapies targeting SARS-CoV-2 remains fundamental because of the continued high incidence of COVID-19 and limited accessibility to antivirals in some countries. In this context, dark chemical matter (DCM), a set...

(This article belongs to the Section Biochemistry)
  • Review
  • Open Access
45 Citations
10,009 Views
14 Pages

COVID-19: Direct and Indirect Mechanisms of Statins

  • Agnieszka Pawlos,
  • Mateusz Niedzielski,
  • Paulina Gorzelak-Pabiś,
  • Marlena Broncel and
  • Ewelina Woźniak

The virus responsible for the current COVID-19 pandemic is severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2): a new virus with high infectivity and moderate mortality. The major clinical manifestation of COVID-19 is interstitial pneumonia,...

(This article belongs to the Section Biochemistry)
  • Article
  • Open Access
2 Citations
4,747 Views
20 Pages

In Silico Identification of Potential Inhibitors of SARS-CoV-2 Main Protease (Mpro)

  • Manuel Alejandro Hernández-Serda,
  • Víctor H. Vázquez-Valadez,
  • Pablo Aguirre-Vidal,
  • Nathan M. Markarian and ,
  • José L. Medina-Franco,
  • Luis Alfonso Cardenas-Granados,
  • Aldo Yoshio Alarcón-López,
  • Pablo A. Martínez-Soriano,
  • Ana María Velázquez-Sánchez and
  • Levon Abrahamyan
  • + 7 authors+ 2 authors

11 October 2024

The ongoing Coronavirus Disease 19 (COVID-19) pandemic has had a profound impact on the global healthcare system. As the SARS-CoV-2 virus, responsible for this pandemic, continues to spread and develop mutations in its genetic material, new variants...

(This article belongs to the Section Viral Pathogens)
  • Article
  • Open Access
7 Citations
3,276 Views
33 Pages

Design, Synthesis and Biological Exploration of Novel N-(9-Ethyl-9H-Carbazol-3-yl)Acetamide-Linked Benzofuran-1,2,4-Triazoles as Anti-SARS-CoV-2 Agents: Combined Wet/Dry Approach Targeting Main Protease (Mpro), Spike Glycoprotein and RdRp

  • Ameer Fawad Zahoor,
  • Saba Munawar,
  • Sajjad Ahmad,
  • Fozia Iram and ,
  • Muhammad Naveed Anjum,
  • Samreen Gul Khan,
  • Jamila Javid,
  • Usman Nazeer and
  • Mashooq Ahmad Bhat
  • + 4 authors+ 0 author

26 November 2024

A novel series of substituted benzofuran-tethered triazolylcarbazoles was synthesized in good to high yields (65–89%) via S-alkylation of benzofuran-based triazoles with 2-bromo-N-(9-ethyl-9H-carbazol-3-yl)acetamide. The inhibitory potency of t...

(This article belongs to the Section Biochemistry)
  • Article
  • Open Access
137 Citations
25,661 Views
29 Pages

Prediction of Novel Inhibitors of the Main Protease (M-pro) of SARS-CoV-2 through Consensus Docking and Drug Reposition

  • Aleix Gimeno,
  • Júlia Mestres-Truyol,
  • María José Ojeda-Montes,
  • Guillem Macip and ,
  • Bryan Saldivar-Espinoza,
  • Adrià Cereto-Massagué,
  • Gerard Pujadas and
  • Santiago Garcia-Vallvé
  • + 3 authors+ 0 author

Since the outbreak of the COVID-19 pandemic in December 2019 and its rapid spread worldwide, the scientific community has been under pressure to react and make progress in the development of an effective treatment against the virus responsible for th...

(This article belongs to the Special Issue New Avenues in Molecular Docking for Drug Design 2020)
  • Article
  • Open Access
16 Citations
15,759 Views
12 Pages

13 January 2021

In 2019 an outbreak occurred which resulted in a global pandemic. The causative agent has been identified in a virus belonging to the Coronaviridae family, similar to the agent of SARS, referred to as SARS-CoV-2. This epidemic spread rapidly globally...

(This article belongs to the Special Issue Drug-Repositioning Opportunities for Antiviral Therapy)
  • Article
  • Open Access
56 Citations
5,104 Views
30 Pages

In Silico Studies of Some Isoflavonoids as Potential Candidates against COVID-19 Targeting Human ACE2 (hACE2) and Viral Main Protease (Mpro)

  • Mohamed S. Alesawy,
  • Abdallah E. Abdallah,
  • Mohammed S. Taghour,
  • Eslam B. Elkaeed and ,
  • Ibrahim H. Eissa and
  • Ahmed M. Metwaly
  • + 1 author+ 0 author

The Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) caused the “COVID-19” disease that has been declared by WHO as a global emergency. The pandemic, which emerged in China and widespread all over the world, has no specific treatment till...

(This article belongs to the Special Issue Molecular Modeling: Advancements and Applications)
  • Article
  • Open Access
6 Citations
3,525 Views
19 Pages

In Silico Screening of Natural Flavonoids against 3-Chymotrypsin-like Protease of SARS-CoV-2 Using Machine Learning and Molecular Modeling

  • Lianjin Cai,
  • Fengyang Han,
  • Beihong Ji,
  • Xibing He and ,
  • Luxuan Wang,
  • Taoyu Niu,
  • Jingchen Zhai and
  • Junmei Wang
  • + 3 authors+ 0 author

10 December 2023

The “Long-COVID syndrome” has posed significant challenges due to a lack of validated therapeutic options. We developed a novel multi-step virtual screening strategy to reliably identify inhibitors against 3-chymotrypsin-like protease of...

(This article belongs to the Special Issue In Silico Methods Applied in Drug and Pesticide Discovery)
  • Article
  • Open Access
93 Citations
6,347 Views
21 Pages

Synthesis, Molecular Docking, and Dynamic Simulation Targeting Main Protease (Mpro) of New, Thiazole Clubbed Pyridine Scaffolds as Potential COVID-19 Inhibitors

  • Adel Alghamdi,
  • Amr S. Abouzied,
  • Abdulwahab Alamri,
  • Sirajudheen Anwar and ,
  • Mukhtar Ansari,
  • Ibrahim Khadra,
  • Yasser H. Zaki and
  • Sobhi M. Gomha
  • + 3 authors+ 0 author

7 February 2023

Many biological activities of pyridine and thiazole derivatives have been reported, including antiviral activity and, more recently, as COVID-19 inhibitors. Thus, in this paper, we designed, synthesized, and characterized a novel series of N-aminothi...

(This article belongs to the Special Issue Drug Development and Repositioning Methodology on COVID-19)
  • Article
  • Open Access
8 Citations
3,264 Views
22 Pages

5 October 2024

Herein, the pharmacokinetic profiles, binding interactions, and molecular properties of fluoroquinolone derivatives as prospective antiviral drugs are examined using a combination of docking, ADME, and DFT simulations. The effectiveness of the ligand...

(This article belongs to the Special Issue Spectroscopic, Thermodynamic and Molecular Docking Studies on Molecular Mechanisms of Drug Binding to Proteins II)
  • Article
  • Open Access
8 Citations
5,274 Views
16 Pages

In Silico Analysis of Peptide-Based Derivatives Containing Bifunctional Warheads Engaging Prime and Non-Prime Subsites to Covalent Binding SARS-CoV-2 Main Protease (Mpro)

  • Simone Brogi,
  • Sara Rossi,
  • Roberta Ibba,
  • Stefania Butini and ,
  • Vincenzo Calderone,
  • Giuseppe Campiani and
  • Sandra Gemma
  • + 2 authors+ 0 author

Despite the progress of therapeutic approaches for treating COVID-19 infection, the interest in developing effective antiviral agents is still high, due to the possibility of the insurgence of viable SARS-CoV-2-resistant strains. Accordingly, in this...

(This article belongs to the Special Issue Computation to Fight SARS-CoV-2 (CoVid-19))
  • Article
  • Open Access
113 Citations
9,762 Views
9 Pages

Crystal Structure of SARS-CoV-2 Main Protease in Complex with the Non-Covalent Inhibitor ML188

  • Gordon J. Lockbaum,
  • Archie C. Reyes,
  • Jeong Min Lee,
  • Ronak Tilvawala and ,
  • Ellen A. Nalivaika,
  • Akbar Ali,
  • Nese Kurt Yilmaz,
  • Paul R. Thompson and
  • Celia A. Schiffer
  • + 4 authors+ 0 author

25 January 2021

Viral proteases are critical enzymes for the maturation of many human pathogenic viruses and thus are key targets for direct acting antivirals (DAAs). The current viral pandemic caused by SARS-CoV-2 is in dire need of DAAs. The Main protease (Mpro) i...

(This article belongs to the Special Issue In Memory of Stephen Oroszlan)
  • Article
  • Open Access
22 Citations
5,032 Views
21 Pages

From Repurposing to Redesign: Optimization of Boceprevir to Highly Potent Inhibitors of the SARS-CoV-2 Main Protease

  • Matthias Göhl,
  • Linlin Zhang,
  • Haifa El Kilani,
  • Xinyuanyuan Sun and ,
  • Kaixuan Zhang,
  • Mark Brönstrup and
  • Rolf Hilgenfeld
  • + 2 authors+ 0 author

The main protease (Mpro) of the betacoronavirus SARS-CoV-2 is an attractive target for the development of treatments for COVID-19. Structure-based design is a successful approach to discovering new inhibitors of the Mpro. Starting from crystal struct...

(This article belongs to the Special Issue Successfully Fighting Viruses with Love for Chemistry: A Commemorative Issue in Honor of Prof. Dr. Erik De Clercq on the Occasion of His 80th Anniversary)
  • Review
  • Open Access
7 Citations
5,486 Views
23 Pages

Research Progress on the Structure and Function, Immune Escape Mechanism, Antiviral Drug Development Methods, and Clinical Use of SARS-CoV-2 Mpro

  • Jiayi Ren,
  • Zhengfu Zhang,
  • Yi Xia,
  • Daqun Zhao and ,
  • Dingqin Li and
  • Shujun Zhang
  • + 1 author+ 0 author

16 January 2025

The three-year COVID-19 pandemic ‘has’ caused a wide range of medical, social, political, and financial implications. Since the end of 2020, various mutations and variations in SARS-CoV-2 strains, along with the immune escape phenomenon,...

(This article belongs to the Special Issue New Strategies for Drug Development)
  • Feature Paper
  • Review
  • Open Access
4 Citations
4,660 Views
22 Pages

A Tale of Two Proteases: MPro and TMPRSS2 as Targets for COVID-19 Therapies

  • Barbara Farkaš,
  • Marco Minneci,
  • Matas Misevicius and
  • Isabel Rozas

Considering the importance of the 2019 outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) resulting in the coronavirus disease 2019 (COVID-19) pandemic, an overview of two proteases that play an important role in the infection b...

(This article belongs to the Special Issue Feature Reviews in Medicinal Chemistry)
  • Article
  • Open Access
18 Citations
4,865 Views
15 Pages

14 October 2021

The SARS-CoV-2 virus is highly contagious to humans and has caused a pandemic of global proportions. Despite worldwide research efforts, efficient targeted therapies against the virus are still lacking. With the ready availability of the macromolecul...

(This article belongs to the Special Issue Potential Anti-SARS-CoV-2 Molecular Strategies)
  • Article
  • Open Access
22 Citations
5,080 Views
13 Pages

Stabilization of the Dimeric State of SARS-CoV-2 Main Protease by GC376 and Nirmatrelvir

  • Alessandro Paciaroni,
  • Valeria Libera,
  • Francesca Ripanti,
  • Andrea Orecchini and ,
  • Caterina Petrillo,
  • Daniela Francisci,
  • Elisabetta Schiaroli,
  • Samuele Sabbatini,
  • Anna Gidari and
  • Francesco Spinozzi
  • + 15 authors+ 10 authors

The main protease (Mpro or 3CLpro) is an enzyme that is evolutionarily conserved among different genera of coronaviruses. As it is essential for processing and maturing viral polyproteins, Mpro has been identified as a promising target for the develo...

(This article belongs to the Special Issue Advances in Molecular Activity of Potential Drugs 3.0)
  • Article
  • Open Access
30 Citations
5,847 Views
24 Pages

3 September 2021

The unprecedented pandemic of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is threatening global health. SARS-CoV-2 has caused severe disease with significant mortality since December 2019. The enzyme chymotrypsin-like protease (3CLpr...

(This article belongs to the Special Issue In Silico Approaches in Drug Design)
  • Article
  • Open Access
71 Citations
6,261 Views
15 Pages

The Inhibitory Effects of Plant Derivate Polyphenols on the Main Protease of SARS Coronavirus 2 and Their Structure–Activity Relationship

  • Thi Thanh Hanh Nguyen,
  • Jong-Hyun Jung,
  • Min-Kyu Kim,
  • Sangyong Lim and ,
  • Jae-Myoung Choi,
  • Byoungsang Chung,
  • Do-Won Kim and
  • Doman Kim
  • + 3 authors+ 0 author

30 March 2021

The main protease (Mpro) is a major protease having an important role in viral replication of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the novel coronavirus that caused the pandemic of 2020. Here, active Mpro was obtained as...

(This article belongs to the Special Issue Advances on Natural Compounds Research: Chemistry, Biology and Biotechnology II)

of 6