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17 pages, 1908 KiB  
Article
BDE-47 Disrupts Gut Microbiota and Exacerbates Prediabetic Conditions in Mice: Therapeutic Potential of Grape Exosomes and Antioxidants
by Zaoling Liu, Fang Cao, Aerna Qiayimaerdan, Nilupaer Aisikaer, Zulipiya Zunong, Xiaodie Ma and Yale Yu
Toxics 2025, 13(8), 640; https://doi.org/10.3390/toxics13080640 - 29 Jul 2025
Viewed by 174
Abstract
Background: BDE-47, a pervasive environmental pollutant detected in >90% of human serum samples, is increasingly linked to metabolic disorders. This study investigates the specific impact of BDE-47 exposure on the gut microbiota in prediabetic mice and evaluates the efficacy of therapeutic interventions [...] Read more.
Background: BDE-47, a pervasive environmental pollutant detected in >90% of human serum samples, is increasingly linked to metabolic disorders. This study investigates the specific impact of BDE-47 exposure on the gut microbiota in prediabetic mice and evaluates the efficacy of therapeutic interventions in mitigating these effects. Objectives: To determine whether BDE-47 exposure induces diabetogenic dysbiosis in prediabetic mice and to assess whether dietary interventions, such as grape exosomes and an antioxidant cocktail, can restore a healthy microbiota composition and mitigate diabetes risk. Methods: In this study, a prediabetic mouse model was established in 54 male SPF-grade C57BL/6J mice through a combination of high-sugar and high-fat diet feeding with streptozotocin injection. Oral glucose tolerance tests (OGTT) were conducted on day 7 and day 21 post-modeling to assess the establishment of the model. The criteria for successful model induction were defined as fasting blood glucose levels below 7.8 mmol/L and 2 h postprandial glucose levels between 7.8 and 11.1 mmol/L. Following confirmation of model success, a 3 × 3 factorial design was applied to allocate the experimental animals into groups based on two independent factors: BDE-47 exposure and exosome intervention. The BDE-47 exposure factor consisted of three dose levels—none, high-dose, and medium-dose—while the exosome intervention factor included three modalities—none, Antioxidant Nutrients Intervention, and Grape Exosomes Intervention. Fresh fecal samples were collected from mice two days prior to sacrifice. Cecal contents and segments of the small intestine were collected and transferred into 1.5 mL cryotubes. All sequences were clustered into operational taxonomic units (OTUs) based on defined similarity thresholds. To compare means across multiple groups, a two-way analysis of variance (ANOVA) was employed. The significance level was predefined at α = 0.05, and p-values < 0.05 were considered statistically significant. Bar charts and line graphs were generated using GraphPad Prism version 9.0 software, while statistical analyses were performed using SPSS version 20.0 software. Results: The results of 16S rDNA sequencing analysis of the microbiome showed that there was no difference in the α diversity of the intestinal microbiota in each group of mice (p > 0.05), but there was a difference in the Beta diversity (p < 0.05). At the gate level, the abundances of Proteobacteria, Campylobacterota, Desulfobacterota, and Fusobacteriota in the medium-dose BDE-7 group were higher than those in the model control group (p < 0.05). The abundance of Patellar bacteria was lower than that of the model control group (p < 0.05). The abundances of Proteobacteria and Campylobacterota in the high-dose BDE-7 group were higher than those in the model control group (p < 0.05). The abundance of Planctomycetota and Patescibacteria was lower than that of the model control group (p < 0.05), while the abundance of Campylobacterota in the grape exosome group was higher than that of the model control group (p < 0.05). The abundance of Patescibacteria was lower than that of the model control group (p < 0.05), while the abundance of Firmicutes and Fusobacteriota in the antioxidant nutrient group was higher than that of the model control group (p < 0.05). However, the abundance of Verrucomicrobiota and Patescibacteria was lower than that of the model control group (p < 0.05). At the genus level, the abundances of Bacteroides and unclassified Lachnospiraceae in the high-dose BDE-7 group were higher than those in the model control group (p < 0.05). The abundance of Lachnospiraceae NK4A136_group and Lactobacillus was lower than that of the model control group (p < 0.05). The abundance of Veillonella and Helicobacter in the medium-dose BDE-7 group was higher than that in the model control group (p < 0.05), while the abundance of Lactobacillus was lower (p < 0.05). The abundance of genera such as Lentilactobacillus and Faecalibacterium in the grape exosome group was higher than that in the model control group (p < 0.05). The abundance of Alloprevotella and Bacteroides was lower than that of the model control group (p < 0.05). In the antioxidant nutrient group, the abundance of Lachnospiraceae and Hydrogenophaga was higher than that in the model control group (p < 0.05). However, the abundance of Akkermansia and Coriobacteriaceae UCG-002 was significantly lower than that of the model control group (p < 0.05). Conclusions: BDE-47 induces diabetogenic dysbiosis in prediabetic mice, which is reversible by dietary interventions. These findings suggest that microbiota-targeted strategies may effectively mitigate the diabetes risk associated with environmental pollutant exposure. Future studies should further explore the mechanisms underlying these microbiota changes and the long-term health benefits of such interventions. Full article
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22 pages, 2461 KiB  
Article
Environmental Drivers of Phytoplankton Structure in a Semi-Arid Reservoir
by Fangze Zi, Tianjian Song, Wenxia Cai, Jiaxuan Liu, Yanwu Ma, Xuyuan Lin, Xinhong Zhao, Bolin Hu, Daoquan Ren, Yong Song and Shengao Chen
Biology 2025, 14(8), 914; https://doi.org/10.3390/biology14080914 - 22 Jul 2025
Viewed by 299
Abstract
Artificial reservoirs in arid regions provide unique ecological environments for studying the spatial and functional dynamics of plankton communities under the combined stressors of climate change and anthropogenic activities. This study conducted a systematic investigation of the phytoplankton community structure and its environmental [...] Read more.
Artificial reservoirs in arid regions provide unique ecological environments for studying the spatial and functional dynamics of plankton communities under the combined stressors of climate change and anthropogenic activities. This study conducted a systematic investigation of the phytoplankton community structure and its environmental drivers in 17 artificial reservoirs in the Ili region of Xinjiang in August and October 2024. The Ili region is located in the temperate continental arid zone of northwestern China. A total of 209 phytoplankton species were identified, with Bacillariophyta, Chlorophyta, and Cyanobacteria comprising over 92% of the community, indicating an oligarchic dominance pattern. The decoupling between numerical dominance (diatoms) and biomass dominance (cyanobacteria) revealed functional differentiation and ecological complementarity among major taxa. Through multivariate analyses, including Mantel tests, principal component analysis (PCA), and redundancy analysis (RDA), we found that phytoplankton community structures at different ecological levels responded distinctly to environmental gradients. Oxidation-reduction potential (ORP), dissolved oxygen (DO), and mineralization parameters (EC, TDS) were key drivers of morphological operational taxonomic unit (MOTU). In contrast, dominant species (SP) were more responsive to salinity and pH. A seasonal analysis demonstrated significant shifts in correlation structures between summer and autumn, reflecting the regulatory influence of the climate on redox conditions and nutrient solubility. Machine learning using the random forest model effectively identified core taxa (e.g., MOTU1 and SP1) with strong discriminatory power, confirming their potential as bioindicators for water quality assessments and the early warning of ecological shifts. These core taxa exhibited wide spatial distribution and stable dominance, while localized dominant species showed high sensitivity to site-specific environmental conditions. Our findings underscore the need to integrate taxonomic resolution with functional and spatial analyses to reveal ecological response mechanisms in arid-zone reservoirs. This study provides a scientific foundation for environmental monitoring, water resource management, and resilience assessments in climate-sensitive freshwater ecosystems. Full article
(This article belongs to the Special Issue Wetland Ecosystems (2nd Edition))
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20 pages, 3556 KiB  
Article
Exogenous Sugar Alcohols Enhance Peach Seedling Growth via Modulation of Rhizosphere Bacterial Communities
by Huili Yu, Jiaqi Li, Wei Shao, Huimin Liu, Ruiquan Dong, Guoyi Xu and Peng Si
Agronomy 2025, 15(7), 1548; https://doi.org/10.3390/agronomy15071548 - 25 Jun 2025
Viewed by 319
Abstract
Excessive fertilizer input and low output are currently problems for peach production in China. Sugar alcohols such as sorbitol and mannitol represent promising eco-friendly fertilization strategies to improve fruit quality and optimize nutrient management. Our research explored the effect of sorbitol and mannitol [...] Read more.
Excessive fertilizer input and low output are currently problems for peach production in China. Sugar alcohols such as sorbitol and mannitol represent promising eco-friendly fertilization strategies to improve fruit quality and optimize nutrient management. Our research explored the effect of sorbitol and mannitol on the rhizosphere environment and peach growth from the rhizosphere micro-ecology perspective. Potted peach seedlings were used as materials. Without adding or adding different sorbitol and mannitol concentration gradients (100, 200, 400) combined with potassium dihydrogen phosphate (KH2PO4), the physicochemical properties of rhizosphere soil, leaf nutrition, photosynthetic and growth index were determined, and the rhizosphere bacterial community was analyzed via Illumina Miseq high-throughput sequencing. Both sorbitol and mannitol altered the rhizosphere environment, effectively improved leaf photosynthesis, and promoted peach seedling growth; particularly, M100 had optimal affection. Sorbitol and mannitol altered the bacterial structure and reduced bacterial diversity, which observably correlated with soil organic matter and available potassium. For the rhizosphere bacterial composition, sorbitol and mannitol increased specific bacterial OTUs and induced changes in bacterial composition, among which chemoheterotrophic and nitrogen-transforming bacteria increased with the addition of sorbitol and mannitol. Association network analysis and a structural equation model showed that S100 and M100 mainly enriched Vicinamibacteraceae to regulate peach seedling growth. Overall, low-concentration sorbitol and mannitol showed the best effect in peach seedling growth through regulating the rhizosphere environment. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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17 pages, 1974 KiB  
Article
The Community Structure of Aerobic Anoxygenic Photosynthetic Bacteria in Biocrusts on Tropical Coral Islands and Their Application in Ecological Restoration, South China Sea
by Jing Wen, Zhimao Mai, Jie Li, Lin Wang and Si Zhang
Microorganisms 2025, 13(6), 1265; https://doi.org/10.3390/microorganisms13061265 - 29 May 2025
Viewed by 314
Abstract
Biological soil crusts (referred to as biocrusts) constitute prominent components within the ecosystem of tropical coral islands in the South China Sea, covering approximately 6.25% of the island’s terrestrial surface. Biocrusts are the key to the restoration of the island ecosystem. It is [...] Read more.
Biological soil crusts (referred to as biocrusts) constitute prominent components within the ecosystem of tropical coral islands in the South China Sea, covering approximately 6.25% of the island’s terrestrial surface. Biocrusts are the key to the restoration of the island ecosystem. It is widely acknowledged that phototrophic microorganisms profoundly contribute to biocrust formation and development. They provide fixed carbon and nitrogen and produce exopolysaccharides for the BSC ecosystems. Although aerobic anoxygenic phototrophic bacteria (AAPB) are an important functional group of phototrophic microorganisms, the community characteristics of AAPB in coral island biocrusts and their role in the formation of biocrusts have rarely been reported. In this study, we employed amplifications of the pufM gene to characterize the AAPB communities of biocrusts on a tropical coral island. The outcomes revealed a discernible augmentation in both the abundance and richness of AAPB concurrent with the formation of biocrusts, concomitantly with a decrement in diversity. Within the AAPB communities, the Pseudomonadota (Proteobacteria) phylum emerges as the prevailing dominion, indicating marked differentiations in terms of family and genus compositions between the biocrust and bare soil. Canonical correlation analysis has unveiled a robust and meaningful correlation between the AAPB composition and the attributes of the soil, including total nitrogen, total organic carbon, total phosphorus, pH, and calcium content. Furthermore, co-occurrence network patterns shift with biocrust formation, enhancing stability. Meanwhile, keystone taxa analysis revealed specific OTUs associated with each soil type, with genus Brevundimonas as the main group. Furthermore, pure-culture AAPB strains isolated from biocrusts exhibited a panorama of diversity, predominantly belonging to Pseudomonadota. Particularly, the Skermanella and Erythrobacter genera demonstrated strong exopolysaccharide secretion and sand-binding capabilities. This study sheds light on the significant functional role of AAPB in tropical coral island biocrusts, expanding our understanding of their contribution to ecosystem services, and providing valuable insights for ecological restoration efforts on coral islands. Full article
(This article belongs to the Section Environmental Microbiology)
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18 pages, 311 KiB  
Article
Synodality of the Romanian Greek-Catholic Church (1964–2024): Evolution, Institutional Forms, and Identity Significance
by Cristian Barta
Religions 2025, 16(5), 579; https://doi.org/10.3390/rel16050579 - 30 Apr 2025
Viewed by 422
Abstract
The Romanian Church United with Rome, Greek-Catholic, boasts a long and rich synodal tradition, with roots tracing back to the Metropolitanate of the Orthodox Romanians of Alba Iulia, which, at the close of the seventeenth century (1697–1700), re-established communion with the Church of [...] Read more.
The Romanian Church United with Rome, Greek-Catholic, boasts a long and rich synodal tradition, with roots tracing back to the Metropolitanate of the Orthodox Romanians of Alba Iulia, which, at the close of the seventeenth century (1697–1700), re-established communion with the Church of Rome. The aim of the study I put forward is to analyse the evolution of synodality in the Greek-Catholic Church of Romania between the years 1964 and 2024, employing a methodology that will systematically relate historical, ecclesiological, and canonical aspects, thereby highlighting their identity implications. The structure of the article is determined by the principal stages through which the Greek-Catholic Church has traversed during the specified period: 1964–1989; 1989–2005; 2005–2024. These stages have witnessed profound transformations within the Greek-Catholic Church, including modifications to its canonical status that have also impacted its synodal life. In the year 1964, as the Second Vatican Council concluded and the decree Orientalium Ecclesiarum was approved, the Greek-Catholic Church of Romania was in the midst of severe communist persecution, having been outlawed since 1948. Its canonical status as a metropolitan province extra Patriarchatus was regulated by the Motu Proprio Cleri Sanctitati (2 June 1957), which recognised the institution of the provincial metropolitan synod, yet not that of the diocesan synod. Due to the persecution, the celebration of the metropolitan synod was not possible; however, privy conferences of bishops and diocesan ordinaries were held, which had significant effects on the life of the Church. The fall of communism, in December 1989, and the legalisation of the Greek-Catholic Church were followed by the publication, on 18 October 1990, of the Codex Canonum Ecclesiarum Orientalium. According to the new legislation, the Greek-Catholic Church regained the status of a Metropolitan Church sui iuris, a status unsuitable to its dignity and tradition since it lacked the institution of the synod. Indeed, the Council of Hierarchs, which under the presidency of the metropolitan archbishop governed the Church, did not constitute a synod but merely a form of exercising episcopal collegiality. Nevertheless, with the approval of the Holy See, the Fourth Provincial Council was held in Blaj (1997–2000). On 14 December 2005, Pope Benedict XVI elevated the Greek-Catholic Church of Romania to the dignity of a Major Archbishopric. Thus, the full attainment of synodality was achieved, with the supreme governing authority being the Major Archbishop and the Synod of Bishops. The proceedings of the Synod of Bishops of the Greek-Catholic Church have prompted institutional development, to be detailed in the article. This research will also illustrate the limitations of the current Codex Canonum Ecclesiarum Orientalium concerning the synodality of the Greek-Catholic Church. Full article
15 pages, 271 KiB  
Article
Establishing the Lay Ministry of Catechists in the Church: Preserving Tradition in New Circumstances
by Denis Barić
Religions 2025, 16(4), 477; https://doi.org/10.3390/rel16040477 - 8 Apr 2025
Viewed by 623
Abstract
This article, including the Introduction and Conclusion, consists of five parts. The first part discusses the role of the catechist in the early Church and its significance in the process of faith education, particularly during the preparation for receiving the sacraments of Christian [...] Read more.
This article, including the Introduction and Conclusion, consists of five parts. The first part discusses the role of the catechist in the early Church and its significance in the process of faith education, particularly during the preparation for receiving the sacraments of Christian initiation. The second part emphasizes the bearers of the catechetical ministry, i.e., bishops, priests, and consecrated persons, but also the Christ’s lay faithful, to whom special attention is given in the third part. This part describes the place and role of the lay faithful in the Church’s evangelizing mission, especially in light of the challenges posed by socio-cultural and religious changes. The fourth part, based on the Apostolic Letter in the form of a motu proprio, Antiquum Ministerium, in which Pope Francis establishes the lay ministry of catechists, and the current state in the Church and socio-cultural context, highlights the reasons that contributed to the establishment of this ministry and the challenges it brings with its establishment. In the fifth part, based on the analysis of ecclesiastical activity in Germany, Italy, and Croatia, the current situation regarding the (non)introduction of a lay catechetical service in the mentioned countries is highlighted. Full article
(This article belongs to the Special Issue Contemporary Practices and Issues in Religious Education)
13 pages, 1277 KiB  
Article
DNA Barcoding of the Genus Discogobio (Teleostei, Cyprinidae) in China
by Hongmei Li, Huan Cheng, Renrong Huang, Zhenya Qiu and Renyi Zhang
Fishes 2025, 10(4), 157; https://doi.org/10.3390/fishes10040157 - 3 Apr 2025
Cited by 1 | Viewed by 530
Abstract
Discogobio is a genus of small, economically important freshwater fishes that are widely distributed in Southwestern China. The species of the genus are morphologically very similar, which makes their taxonomic identification quite challenging. DNA barcoding technology can identify species at the molecular level, [...] Read more.
Discogobio is a genus of small, economically important freshwater fishes that are widely distributed in Southwestern China. The species of the genus are morphologically very similar, which makes their taxonomic identification quite challenging. DNA barcoding technology can identify species at the molecular level, thus overcoming the limitations of morphological classification. In this study, we collected 16 morphological species of Discogobio from China, analyzed the mitochondrial cytochrome oxidase I subunit (COI) gene sequences of 206 samples, and applied DNA barcoding to identify the species. The COI amplicon was 651 bp in length, and the mean base contents were: (T) 28.83%, (C) 27.63%, (A) 25.97%, (G) 17.57%. The AT content (54.8%) was higher, and the base composition was biased. The intraspecific differences in the genus Discogobio were not significant, and the genetic distances were all less than 2%. The average interspecific genetic distances (3.94%) were about 18.8 times the average intraspecific genetic distances (0.21%), suggesting that there are barcode gaps among the species of the genus Discogobio. Five different species definition methods, Automatic Barcode Gap Discovery (ABGD), Assemble Species by Automatic Partitioning (ASAP), Bayesian Poisson Tree Process (bPTP), Generalized Mixed Yule Combination (GMYC), and Refined Single Linkage (RESL), were used to infer molecular operational taxonomic units (MOTU). The number of MOTUs ranged from 9 to 18. Phylogenetic analysis based on COI gene haplotypes showed that most species formed well-evolved branches on the phylogenetic tree, and the clustering among species was obvious without mixing. The results of this study provide reliable DNA barcoding information for species identification within the genus Discogobio, which is of great significance for taxonomic identification. Full article
(This article belongs to the Special Issue Fish DNA Barcoding)
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20 pages, 3416 KiB  
Article
Host Transcriptome and Microbial Variation in Relation to Visceral Hyperalgesia
by Christopher J. Costa, Stephanie Prescott, Nicolaas H. Fourie, Sarah K. Abey, LeeAnne B. Sherwin, Bridgett Rahim-Williams, Paule V. Joseph, Hugo Posada-Quintero, Rebecca K. Hoffman and Wendy A. Henderson
Nutrients 2025, 17(5), 921; https://doi.org/10.3390/nu17050921 - 6 Mar 2025
Viewed by 1053
Abstract
Background: Chronic visceral hypersensitivity is associated with an overstressed pain response to noxious stimuli (hyperalgesia). Microbiota are active modulators of host biology and are implicated in the etiology of visceral hypersensitivity. Objectives: we studied the association between the circulating mRNA transcriptome, the intensity [...] Read more.
Background: Chronic visceral hypersensitivity is associated with an overstressed pain response to noxious stimuli (hyperalgesia). Microbiota are active modulators of host biology and are implicated in the etiology of visceral hypersensitivity. Objectives: we studied the association between the circulating mRNA transcriptome, the intensity of induced visceral pain (IVP), and variation in the oral microbiome among participants with and without baseline visceral hypersensitivity. Methods: Transcriptomic profiles and microbial abundance were correlated with IVP intensity. Host mRNA and microbes associated with IVP were explored, linking variation in the microbiome to host RNA biology. Results: 259 OTUs were found to be associated with IVP through correlation to differential expression of 471 genes in molecular pathways related to inflammation and neural mechanisms, including Rho and PI3K/AKT pathways. The bacterial families Lachnospiraceae, Prevotellaceae, and Veillonellaceae showed the highest degree of association. Oral microbial profiles with reduced diversity were characteristic of participants with visceral hypersensitivity. Conclusions: Our results suggest that the oral microbiome may be involved in systemic immune and inflammatory effects and play a role in nervous system and stem cell pathways. The interactions between visceral hypersensitivity, differentially expressed molecular pathways, and microbiota described here provide a framework for further work exploring the relationship between host and microbiome. Full article
(This article belongs to the Special Issue Diet and Microbiota–Gut–Brain Axis: A Novel Nutritional Therapy)
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13 pages, 3116 KiB  
Article
Research on Key Technologies of Quantum-Safe Metro-Optimized Optical Transport Networks
by Wei Zhou, Bingli Guo, Boying Cao and Xiaohui Cheng
Appl. Sci. 2025, 15(5), 2809; https://doi.org/10.3390/app15052809 - 5 Mar 2025
Viewed by 732
Abstract
This research introduces a novel physical-layer encryption technique for metropolitan-optimized optical transport networks (M-OTNs) that integrates real-time optical signal time-domain scrambling/descrambling with decoy-state quantum key distribution (DS-QKD). The method processes real-time optical data from the optical service unit (OSU) using a series of [...] Read more.
This research introduces a novel physical-layer encryption technique for metropolitan-optimized optical transport networks (M-OTNs) that integrates real-time optical signal time-domain scrambling/descrambling with decoy-state quantum key distribution (DS-QKD). The method processes real-time optical data from the optical service unit (OSU) using a series of tunable Fabry–Perot cavities (FPCs), synchronized and updated with a running key. Experimental validation demonstrates secure communication within the optical network’s physical layer during standard OTU2 data transmission (10.709 Gbps), achieving an online transmission distance exceeding 100 km over typical single-mode fiber with a power loss of approximately 1.77 dB. The results indicate that this integrated approach significantly enhances the security of the optical physical layer in M-OTNs. Full article
(This article belongs to the Special Issue Novel Approaches for High Speed Optical Communication)
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18 pages, 3310 KiB  
Article
Effects of Different Biological Amendments on Rice Physiology, Yield, Quality, and Soil Microbial Community of Rice–Crab Co-Culture in Saline–Alkali Soil
by Yang Guo, Juncang Tian and Zhi Wang
Agronomy 2025, 15(3), 649; https://doi.org/10.3390/agronomy15030649 - 5 Mar 2025
Viewed by 1094
Abstract
The yield and quality of rice are influenced by soil conditions, and the soil issues in saline–alkaline land limit agricultural productivity. The saline–alkaline fields in the northern irrigation area of Yinchuan, Ningxia, China, face challenges such as low rice yield, poor quality, low [...] Read more.
The yield and quality of rice are influenced by soil conditions, and the soil issues in saline–alkaline land limit agricultural productivity. The saline–alkaline fields in the northern irrigation area of Yinchuan, Ningxia, China, face challenges such as low rice yield, poor quality, low fertilizer utilization efficiency, and soil salinity and alkalinity obstacles. To improve this situation, this study conducted experiments in 2022–2023 in the saline–alkaline rice–crab integrated fields of Tongbei Village, Tonggui Township, Yinchuan. This study employed a single-factor comparative design, applying 150 mL·hm−2 of brassinolide (A1), 15 kg·hm−2 of diatomaceous (A2), 30 kg·hm−2 of Bacillus subtilis agent (A3), and an untreated control (CK) to analyze the effects of different biological amendments on rice growth, photosynthesis, yield, quality, and microbial communities. The results indicated that, compared with CK, the A3 increased the SPAD value and net photosynthetic rate by 2.26% and 28.59%, respectively. Rice yield increased by 12.34%, water use efficiency (WUE) by 10.67%, and the palatability score by 2.82%, while amylose content decreased by 8.00%. The bacterial OTUs (Operational Taxonomic Units) and fungal OTUs increased by 2.18% and 22.39%, respectively. Under the condition of applying 30 kg·hm−2 of Bacillus subtilis agent (A3), rice showed superior growth, the highest yield (8804.4 kg·hm−2), and the highest microbial OTUs. These findings provide theoretical and technical support for utilizing biological remediation agents to achieve desalinization, yield enhancement, quality improvement, and efficiency in saline–alkali rice–crab co–culture paddies. Full article
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21 pages, 5976 KiB  
Article
Diversity and Correlation Analysis of Endophytes and Top Metabolites in Phlomoides rotata Roots from High-Altitude Habitats
by Zuxia Li, Huichun Xie, Guigong Geng, Chongxin Yin, Xiaozhuo Wu, Jianxia Ma, Rui Su, Zirui Wang and Feng Qiao
Microorganisms 2025, 13(3), 503; https://doi.org/10.3390/microorganisms13030503 - 25 Feb 2025
Viewed by 630
Abstract
Phlomoides rotata, a traditional medicinal plant, always grows on the Tibetan Plateau at a high altitude of 3100–5200 m. The major active ingredients in P. rotata were used in medicines due to their diverse pharmacological effects, including hemostatic, anti-inflammatory, antitumor, immuno-modulatory, and [...] Read more.
Phlomoides rotata, a traditional medicinal plant, always grows on the Tibetan Plateau at a high altitude of 3100–5200 m. The major active ingredients in P. rotata were used in medicines due to their diverse pharmacological effects, including hemostatic, anti-inflammatory, antitumor, immuno-modulatory, and antioxidant activities. This study screened 15 top endophytic genus through the analysis of OTUs and the top 30 metabolites with relatively high content in P. rotata roots from four different habitats (HN, GL, YS, and CD regions) in Qinghai Province. Twelve physicochemical indicators were measured and analyzed in the rhizosphere soils of P. rotata habitats. The results indicated that the top 30 metabolites compounds included 7 amino acids, 5 sugars and alcohols, 4 phenylpropanoids, 3 Organic acids, and 3 Alkaloids. Four endophytic bacteria (Acidibacter, Sphingomonas, Variovorax, and Sphingobium) and three endophytic fungi (Tetracladium, Cadophora, and Minimelanolocus) were dominant genera in P. rotata roots from four habitats. There were 109 positive significant correlations and 57 negative correlations between OTUs of endophytic bacteria and contents of top 30 metabolites, and 59 positive significant correlations and 58 negative correlations between OTUs of endophytic fungus and contents of top 30 metabolites. The OTUs of Acidibacter were significantly positively correlated with the content of 5 soil physicochemical indicators (total phosphorus, amylase, sucrase, total potassium, or soil organic carbon) and significantly negatively correlated with the content of acid protease. OTUs of Tetracladium or Cadophora showed a positive correlation with the content of total phosphorus and a negative correlation with that of alkaline phosphatase. This study provides a theoretical basis for the study of the correlation between endophytes and metabolites in P. rotata roots. Full article
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94 pages, 17473 KiB  
Article
Exploring the Diversity and Ecological Dynamics of Palm Leaf Spotting Fungi—A Case Study on Ornamental Palms in Portugal
by Diana S. Pereira and Alan J. L. Phillips
J. Fungi 2025, 11(1), 43; https://doi.org/10.3390/jof11010043 - 7 Jan 2025
Viewed by 1756
Abstract
Palm trees (Arecaceae) are among the most popular ornamental plants worldwide. Despite extensive research on the fungi associated with Arecaceae, the diversity and ecological dynamics of fungi affecting ornamental palms remain poorly studied, although they have significant impact on palm [...] Read more.
Palm trees (Arecaceae) are among the most popular ornamental plants worldwide. Despite extensive research on the fungi associated with Arecaceae, the diversity and ecological dynamics of fungi affecting ornamental palms remain poorly studied, although they have significant impact on palm health and economic value. Furthermore, while research on palm fungal diversity has traditionally focused on tropical assemblages, ornamental palms in temperate climates offer a unique opportunity to explore the diversity of palm fungi in non-native habitats. The present study conducted a preliminary assessment of the diversity and ecology of potential phytopathogenic fungi associated with foliar lesions on various ornamental palm host species in Portugal, combining morphological examination, PCR-based genomic fingerprinting, and biodiversity data analysis. The examination of 134 foliar lesions sampled from 100 palm trees resulted in a collection of 2064 palm leaf spotting fungi (PLSF), representing a diverse fungal assemblage of 320 molecular operational taxonomic units (MOTUs) across 97 genera. The overall fungal community composition revealed a distinct assemblage dominated by Neosetophoma, Alternaria, Phoma, and Cladosporium, with a profusion of infrequent and rare taxa consistent with a logseries distribution. Significantly positive co-occurrence (CO) patterns among prevalent and uncommon taxa suggest potential synergistic interactions enhancing fungal colonisation, persistence, and pathogenicity. The taxonomic structures of the PLSF contrasted markedly from tropical palm fungi, especially in the prevalence of pleosporalean coelomycetes of the Didymellaceae and Phaeosphaeriaceae, including recently introduced or not previously documented genera on Arecaceae. This novel assemblage suggests that climatic constraints shape the structure of palm fungal communities, resulting in distinctive temperate and tropical assemblages. In addition, the fungal assemblages varied significantly across palm host species, with temperate-native palms hosting more diverse, coelomycete-enriched communities. The present findings highlight foliar lesions as hyperdiverse microhabitats harbouring fungal communities with intricate interactions and a complex interplay of climatic, host, and ecological factors. With climate change altering environmental conditions, the identification of fungi thriving in or inhabiting these microhabitats becomes crucial for predicting shifts in pathogen dynamics and mitigating future fungal disease outbreaks. Understanding these complex ecological dynamics is essential for identifying potential phytopathogenic threats and developing effective management strategies for the health and sustainability of ornamental plants. Full article
(This article belongs to the Special Issue Diversity of Microscopic Fungi)
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24 pages, 7266 KiB  
Article
Cast from the Past? Microbial Diversity of a Neolithic Stone Circle
by Mercedes Martín-Cereceda, Amaya de Cos-Gandoy, Richard A. J. Williams, David Elliott, Andrea Serrano-Bellón, Blanca Pérez-Uz and Abel Sanchez-Jimenez
Microorganisms 2024, 12(11), 2338; https://doi.org/10.3390/microorganisms12112338 - 16 Nov 2024
Viewed by 1512
Abstract
We studied the microbial diversity colonizing limestone rock pools at a Neolithic Monument (Arbor Low, Derbyshire, England). Five pools were analyzed: four located at the megaliths of the stone circle and one pool placed at the megalith at the Gib Hill burial mound [...] Read more.
We studied the microbial diversity colonizing limestone rock pools at a Neolithic Monument (Arbor Low, Derbyshire, England). Five pools were analyzed: four located at the megaliths of the stone circle and one pool placed at the megalith at the Gib Hill burial mound 300 m distant. Samples were taken from rock pool walls and sediments, and investigated through molecular metabarcoding. The microbiome consisted of 23 phyla of bacteria (831 OTUs), 4 phyla of archaea (19 OTUs), and 27 phyla of microbial eukarya (596 OTUs). For bacteria, there were statistically significant differences in wall versus sediment populations, but not between pools. For archaea and eukarya, significant differences were found only between pools. The most abundant bacterial phylum in walls was Cyanobacteriota, and Pseudomonadota in sediments. For archaea and microbial eukarya, the dominant phyla were Euryarcheota and Chlorophyta, respectively, in both wall and sediments. The distant pool (P5) showed a markedly different community structure in phyla and species, habitat discrimination, and CHN content. Species sorting and dispersal limitation are discussed as mechanisms structuring the microbiome assemblages and their spatial connectivity. The Arbor Low microbiome is composed of terrestrial representatives common in extreme environments. The high presence of Cyanobacteriota and Chlorophyta in the Arbor Low stones is troubling, as these microorganisms can induce mechanical disruption by penetrating the limestone matrix through endolithic/chasmoendolithic growth. Future research should focus on the metabolic traits of strains to ascertain their implication in bioweathering and/or biomineralization. Full article
(This article belongs to the Section Environmental Microbiology)
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16 pages, 2546 KiB  
Article
Evaluation of the ActiMotus Software to Accurately Classify Postures and Movements in Children Aged 3–14
by Charlotte Lund Rasmussen, Danica Hendry, George Thomas, Amber Beynon, Sarah Michelle Stearne, Juliana Zabatiero, Paul Davey, Jon Roslyng Larsen, Andrew Lloyd Rohl, Leon Straker and Amity Campbell
Sensors 2024, 24(20), 6705; https://doi.org/10.3390/s24206705 - 18 Oct 2024
Viewed by 1235
Abstract
Background: ActiMotus, a thigh-accelerometer-based software used for the classification of postures and movements (PaMs), has shown high accuracy among adults and school-aged children; however, its accuracy among younger children and potential differences between sexes are unknown. This study aimed to evaluate the accuracy [...] Read more.
Background: ActiMotus, a thigh-accelerometer-based software used for the classification of postures and movements (PaMs), has shown high accuracy among adults and school-aged children; however, its accuracy among younger children and potential differences between sexes are unknown. This study aimed to evaluate the accuracy of ActiMotus to measure PaMs among children between 3 and 14 years and to assess if this was influenced by the sex or age of children. Method: Forty-eight children attended a structured ~1-hour data collection session at a laboratory. Thigh acceleration was measured using a SENS accelerometer, which was classified into nine PaMs using the ActiMotus software. Human-coded video recordings of the session provided the ground truth. Results: Based on both F1 scores and balanced accuracy, the highest levels of accuracy were found for lying, sitting, and standing (63.2–88.2%). For walking and running, accuracy measures ranged from 48.0 to 85.8%. The lowest accuracy was observed for classifying stair climbing. We found a higher accuracy for stair climbing among girls compared to boys and for older compared to younger age groups for walking, running, and stair climbing. Conclusions: ActiMotus could accurately detect lying, sitting, and standing among children. The software could be improved for classifying walking, running, and stair climbing, particularly among younger children. Full article
(This article belongs to the Special Issue Soft and Wearable Sensors for Human Health Monitoring)
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17 pages, 2832 KiB  
Article
Root Endophytic Microorganisms Contribute to the Attribute of Full-Year Shooting in Woody Bamboo Cephalostachyum pingbianense
by Lushuang Li, Bin Li, Qing Li, Lianchun Wang and Hanqi Yang
Microorganisms 2024, 12(9), 1927; https://doi.org/10.3390/microorganisms12091927 - 22 Sep 2024
Cited by 1 | Viewed by 1372
Abstract
Cephalostachyum pingbianense (Hsueh & Y.M. Yang ex Yi et al.) D.Z. Li & H.Q. Yang is unique among bamboo species for its ability to produce bamboo shoots in all seasons under natural conditions. Apart from the physiological mechanism, information regarding the effects of [...] Read more.
Cephalostachyum pingbianense (Hsueh & Y.M. Yang ex Yi et al.) D.Z. Li & H.Q. Yang is unique among bamboo species for its ability to produce bamboo shoots in all seasons under natural conditions. Apart from the physiological mechanism, information regarding the effects of endophytic microorganisms on this full-year shooting characteristic is limited. We hypothesize that root endophytic microorganisms will have a positive impact on the full-year bamboo shooting characteristic of C. pingbianense by increasing the availability or supply of nutrients. To identify the seasonal variations in the root endophytic bacterial and fungal communities of C. pingbianense, and to assess their correlation with bamboo shoot productivity, the roots of C. pingbianense were selected as research materials, and the 16S rRNA and ITS rDNA genes of root endophytic microorganisms were sequenced using the Illumina platform. Following this sequencing, raw sequencing reads were processed, and OTUs were annotated. Alpha and beta diversity, microbial composition, and functional predictions were analyzed, with correlations to bamboo shoot numbers assessed. The results showed that seasonal changes significantly affected the community diversity and structure of root endophytic microbes of C. pingbianense. Bacterial communities in root samples from all seasons contained more nitrogen-fixing microorganisms, with members of the Burkholderiales and Rhizobiales predominating. The relative abundances of ectomycorrhizal and arbuscular mycorrhizal fungi in the autumn sample were significantly higher than in other seasons. Correlation analysis revealed that the bamboo shoot productivity was significantly and positively correlated with bacterial functions of nitrogen fixation, arsenate detoxification, and ureolysis, as well as with symbiotrophic fungi, ectomycorrhizal fungi, and arbuscular mycorrhizal fungi. At the genus level, the bacterial genus Herbaspirillum and the fungal genera Russula, unclassified_f_Acaulosporaceae, and unclassified_f_Glomeraceae were found to have a significant positive correlation with bamboo shoot number. Our study provides an ecological perspective for understanding the highly productive attribute of C. pingbianense and offers new insights into the forest management of woody bamboos. Full article
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