Search Results (3,347)

Cotton Verticillium wilt is a devastating fungal disease caused by Verticillium dahliae, and biological control has become a safe and efficient strategy for its green prevention and control. In this study, the endophytic strain Bacillus velezensis BHZ-29 was used as the biocontrol material, and rifampicin labeling and greenhouse pot assays were performed to clarify its colonization characteristics and induced disease resistance mechanism in cotton. The results showed that the rifampicin-resistant mutant strain maintained consistent morphological traits, antagonistic activity and biocontrol performance with the wild-type strain, ensuring the reliability of colonization tracing. Strain BHZ-29 could stably colonize the roots, stems and leaves of different cotton varieties, with roots serving as the dominant colonization tissue. Physiological analysis indicated that BHZ-29 inoculation significantly activated the antioxidant and defense enzyme system of cotton, including POD, CAT, SOD, PPO and PAL. The defense enzyme activities of cotton leaves showed a trend of first increasing and then decreasing, and the combined inoculation of BHZ-29 and V. dahliae exhibited the highest enzyme activity. Meanwhile, BHZ-29 treatment significantly increased vitamin C content and reduced malondialdehyde accumulation in cotton, alleviating pathogen-induced oxidative damage. Field pot verification confirmed that BHZ-29 possessed excellent and broad-spectrum biocontrol effects on cotton Verticillium wilt with stable control efficacy across different cotton varieties. This study clarifies the colonization and induced resistance mechanism of strain BHZ-29 against Verticillium wilt, providing a promising microbial resource and theoretical basis for the green biological control of cotton soil-borne diseases. Full article

Bacterial and fungal skin infections are common in companion animals and often require antimicrobial therapy, contributing to antimicrobial resistance. This study developed shampoos containing red palm oil (RPO) and extracts of Rhinacanthus nasutus (RN), Curcuma longa (CL), Zingiber montanum (ZM), and Zingiber officinale (ZO), which provide antibacterial, antifungal, antioxidant, and anti-inflammatory activities. Extracts were obtained using MAE and were evaluated for phytochemical composition, total phenolic content, antioxidant activity (DPPH assay), anti-inflammatory activity (COX-2 inhibition), and antimicrobial activity. RPO contained high levels of vitamin E and β-carotene. Rhinacanthin, curcumin, terpinen-4-ol, and 6-gingerol were the major phytochemical constituents of RN, CL, ZM, and ZO extracts, respectively. All extracts significantly reduced COX-2 expression (p < 0.05), while RN exhibited the strongest antioxidant activity (DPPH IC₅₀ = 15.23 ± 0.53 µg/mL). RN and ZM demonstrated the strongest antibacterial activity against Staphylococcus aureus and methicillin-resistant Staphylococcus aureus (MIC = 8 µg/mL; MBC = 8–16 µg/mL), while ZO exhibited the strongest antifungal activity against Malassezia pachydermatis and Microsporum gypseum (MIC = 2, 2 µg/mL; MFC = 2, 16 µg/mL). The developed shampoos containing RPO and the four herb extracts showed suitable pH values, stable viscosity, antibacterial inhibition, and antifungal inhibition (p < 0.05). Full article

Invasive candidiasis, predominantly driven by multidrug-resistant Candida species and intractable biofilms, represents an escalating global health crisis with mortality rates rivaling major infectious diseases. The clinical efficacy of conventional antifungal agents—azoles, polyenes, and echinocandins—is severely compromised by poor tissue penetration, dose-limiting systemic toxicity, and the rapid evolution of complex resistance mechanisms. Here, we review the two-decade structural evolution of nanotechnological interventions designed to overcome these pharmacological and biological barriers. We systematically analyze advanced nanosystems, including lipid-based formulations, natural polymers, and biogenic metallic nanostructures, highlighting their capacity to penetrate the dense extracellular polymeric substance (EPS), combat potential fungal ‘nano-resistance’, and significantly reduce metabolically dormant persister cell populations. The literature search was performed using the electronic databases PubMed, Scopus, Web of Science, and Google Scholar. Publications indexed between 2015 and 2025 were primarily considered, while seminal studies published before 2015 were included when necessary to provide historical context and foundational knowledge. We place specific emphasis on next-generation biomimetic and exosome-inspired nanocarriers, which significantly reduce systemic host toxicity while maximizing targeted antifungal efficacy. In this context, the synergistic integration of smart nanocarriers to actively disassemble fungal resistance networks, such as the target of rapamycin (TOR) signaling pathway and sphingolipid biosynthesis. Finally, we outline a strategic roadmap to bridge the translational “Valley of Death”. By prioritizing manufacturing standardization, comprehensive long-term biosecurity profiling, and rationally designed biomimetic platforms, we propose an alternative way to outpace the evolutionary adaptations of fungal pathogenesis and translate these innovations into the clinic. Full article

Fungal infection remains a significant therapeutic concern owing to the scarcity of drugs, resistance development, and high levels of toxicity of many conventional antifungals. In this regard, chitosan is one such natural polymer whose biocompatibility, biodegradability, and antimicrobial nature have made it the focus of scientific interest. However, the main problem lies in the polymer’s limited aqueous solubility under physiological conditions and its poor efficacy against fungi. Thus, quaternary ammonium functionalization represents a convenient approach to solving the problem by introducing permanent positive charges into the molecular structure of chitosan, thereby improving water solubility, enabling membrane interactions, and conferring broad-spectrum antifungal activity. Such derivatives can exhibit strong interactions with the negatively charged surface of fungal cells, compromising membrane integrity and inhibiting biofilm formation. Apart from their antifungal activity, such compounds are also promising in local delivery systems, which include coatings, nanoparticles, hydrogels, and wound dressings. Considering their unique chemistry, such compounds appear quite promising for the development of novel antifungal biomaterials that can be adapted to different clinical and pharmaceutical needs. Overall, quaternary ammonium-modified chitosan could be considered a promising platform for the development of next-generation antifungal agents. This review offers a comprehensive discussion regarding the synthesis, mode of action, formulation advancements, safety profile, potential applications, and future directions of quaternary ammonium-functionalized chitosan derivatives as an antifungal agent, with an emphasis on artificial intelligence contributions to this area of research. Full article

Rapid and accurate identification of Candida species is critical for guiding antifungal therapy, especially with the emergence of intrinsically resistant pathogens. However, diagnostics using culture-based methods remain slow and labor-intensive, limiting timely treatment decisions. This systematic review evaluated the diagnostic performance and clinical applicability of nucleic acid amplification tests (NAATs) for Candida species identification using a PubMed search completed on 23 June 2025. A total of 888 records were screened, 333 full-text articles were assessed, and 158 studies were included based on criteria including comparison with standard diagnostic methods, diagnostic performance reporting, and involvement of clinical samples. PCR-based approaches were the most widely used, including conventional, nested, multiplex, real-time, and droplet digital PCR. Isothermal methods such as loop-mediated isothermal amplification (LAMP) and recombinase polymerase amplification (RPA) were increasingly represented. Common molecular targets included the ITS and 18S/28S rDNA regions. The risk of bias assessment was completed with the QUADAS-2 tool. Diagnostic performance varied depending on assay design, specimen type, gene target, and reference method. Excellent specificity and low limits of detection were achieved, especially with isothermal platforms offering the shortest turnaround times and greatest potential for point-of-care implementation. Multiplex assays were particularly advantageous for detecting mixed-species samples, while highly specific assays were optimal for distinguishing clinically important species such as Candidozyma auris, Nakaseomyces glabratus, and Pichia kudriavzevii. Overall, NAATs represent a promising diagnostic tool for Candida species identification, but broader clinical adoption will require improved standardization, validation across diverse patient populations, and clearer interpretation of fungal burden in the context of colonization versus infection. Full article

Background: Candida auris has emerged globally as a multidrug-resistant fungal pathogen responsible for healthcare-associated outbreaks and invasive infections. Whole-genome sequencing studies have demonstrated the existence of genetically distinct clades that differ in geographical distribution, antifungal resistance patterns, virulence traits, and outbreak potential. Objectives: This study aimed to evaluate the performance of the ClaID clade identification PCR system among clinical Candida auris isolates collected in İstanbul, Türkiye, and to investigate the clade-associated molecular profiles of circulating isolates. Methods: Forty-four clinical C. auris isolates were analysed using the auris universal sequence (AUS) assay and clade-specific sequence assays (CSS1–CSS5). PCR amplification results were interpreted according to the ClaID framework. Results: AUS amplification was detected in 41/44 isolates (93.2%). CSS1 amplification was observed in 39/44 isolates (88.6%), indicating a predominance of Clade I-associated molecular profiles within this regional İstanbul isolate collection. No amplification was detected using CSS2, CSS3, CSS4, or CSS5 assays. Three isolates were AUS-negative and five isolates did not yield CSS1 amplification despite repeated testing. Conclusions: The findings suggest that the majority of analyzed clinical isolates from İstanbul exhibited Clade I-associated molecular profiles rather than definitive WGS-confirmed clade assignments. This study provides one of the first field evaluations of the ClaID system in a Turkish clinical isolate collection and contributes regional molecular epidemiological data regarding PCR-based clade-associated profiles of C. auris in Türkiye. Full article

The antibiotic and drug resistance of various bacterial and fungal strains poses a significant challenge to medicine and industry. The subject of numerous studies is how to limit the spread of microorganisms and biofilm formation on various surfaces. This research focuses on the antibacterial and antifungal properties of cross-linked methacrylate-based composites for specific applications. These composites were modified using 10 wt.% of compounds with scientifically proven antimicrobial properties. These include nanosilver, copper sulphate, benzethonium chloride, and zinc oxide. The antimicrobial potential against the following bacteria and fungi was determined: Gram-positive bacteria (Staphylococcus aureus); Gram-negative bacteria (Pseudomonas aeruginosa and Escherichia coli); and the pathogenic fungi Candida albicans and Aspergillus niger. Using the modified disc-diffusion method alongside a serial dilution method demonstrated an inhibitory effect on the viability and formation of bacterial and fungal biofilms. It was demonstrated that—in liquid cultures—composites containing benzethonium chloride inhibited the growth of P. aeruginosa by over 75%, more than 50% of E. coli and more than 70% of S. aureus. Growth inhibition of C. albicans exceeded 80% for selected composites (BPA.DM + NVP + CuSO₄, BPA.DM + NVP + ZnO), while all composites inhibited the growth of A. niger by more than 45%, and in some cases (BPA.DM + HEMA + CuSO₄, BPA.DM + HEMA + Ag, BPA.DM + MMA + Ag and BPA.DM + AEH + CuSO₄) by more than 90%. Additionally, these composites significantly reduced biofilm formation on their surfaces. Modification with zinc oxide and benzethonium chloride resulted in materials that were non-toxic to normal human skin fibroblasts. To sum up the obtained results, it can be stated that these multifunctional materials with antibacterial properties could be used in medical devices, coatings, and other specialised applications where microbial contamination is a significant issue. Full article

Canker is a destructive fungal disease that adversely affects plant growth, triggering leaf drop, branch dieback and even plant death. For the blueberry industry, fungal canker reduces blueberry yield and quality. In this study, diseased branches of the ‘Bluegold’ blueberry cultivar collected from open-field plantations in Jilin Province, China, were used to isolate and identify the pathogen, characterize its biological properties, and investigate the physiological and metabolomic responses of blueberry shoots to pathogen infection. Based on morphological characteristics and internal transcribed spacer sequence analysis, the pathogen was preliminarily identified as Diaporthe eres. Biological characterization showed that the optimal temperature and pH for mycelial growth of the isolate were 25 °C and 6, respectively, while light conditions had no significant effect on fungal growth. Pathogenicity results demonstrated that infection by the isolate significantly induced the accumulation of superoxide anions (O₂^.−) and hydrogen peroxide (H₂O₂) in blueberry new shoots, which led to lipid peroxidation and subsequently resulted in significant increases in malondialdehyde content and relative electrical conductivity. Concurrently, the plant’s antioxidant enzyme system was disrupted, and the activities of peroxidase and superoxide dismutase remained significantly elevated throughout the infection period, while catalase activity exhibited an initial increase followed by a gradual decline. Metabolomic analysis identified 541 differentially accumulated metabolites, with key metabolites including ferulic acid, quercetin and kaempferol showing marked abundance changes. These were primarily enriched in pathways closely associated with plant resistance, such as phenylpropanoid biosynthesis and flavonoid biosynthesis. Combined analysis of physiological and metabolomic data showed that reactive oxygen species accumulation and antioxidant enzyme responses were accompanied by significant enrichment of phenylpropanoid and flavonoid metabolism, indicating coordinated antioxidant regulation and secondary metabolic reprogramming in blueberry shoots following pathogen infection. Overall, this study preliminarily identified a D. eres isolate associated with blueberry canker in Jilin Province, and systematically characterized the physiological and metabolic responses of blueberry to pathogen infection, providing a theoretical basis for understanding blueberry—Diaporthe interactions and for developing effective disease management strategies. Full article

Kazakhstan possesses considerable potential for the development of organic agriculture. In organic production systems, the use of chemical plant protection products is restricted or completely excluded, making the cultivation of genetically resistant wheat lines to major fungal diseases one of the most effective approaches for maintaining stable grain production. The current study aimed to evaluate disease resistance in wheat genotypes by integrating phenotypic screening and marker-assisted selection and their validation under organic farming conditions. A total of 50 facultative and introgressive wheat lines were evaluated under an artificial infection background for resistance to yellow rust, leaf rust, stem rust, and common bunt. Molecular marker analysis was performed to identify resistance-associated alleles. Integrated phenotypic and molecular analyses enabled the identification of three promising genotypes, namely 1675-52, 1723-32, and 1716-24. They combined a high level of resistance to yellow rust and common bunt with the presence of resistance-associated alleles. These selected genotypes were subsequently validated under organic field conditions. The results demonstrated that these lines maintained stable resistance to yellow rust and common bunt and produced seed yield ranging from 5.45 to 5.94 t/ha, exceeding that of the standard cv. Almaly (4.88 t/ha). The obtained results confirm the effectiveness of integrating phenotypic screening with marker-assisted selection for identifying wheat genotypes with complex disease resistance. These genotypes represent promising prebreeding resources for organic agriculture, subject to validation across a wider range of environments. Full article

Healthcare-associated infections represent a global public health challenge, primarily driven by biofilm-forming multidrug-resistant pathogens on medical device surfaces, leading to high morbidity, mortality, and healthcare costs. As antibiotic strategies fail due to antimicrobial resistance, this study investigates a primary-prevention nanotechnology strategy based on the photochemical functionalization of clinically relevant substrates (polyurethane venous catheters, cotton gauze, and glass-fiber HEPA filter membranes) with immobilized silver nanoparticles. While the photochemical deposition ensures a controlled silver release experimentally quantified here by ICP-MS (≈0.44 ppm·day⁻¹) within safety thresholds, the core value of this functionalization lies in its broad-spectrum and long-term efficacy. Agar diffusion assays performed against a panel of 10 multidrug-resistant clinical isolates, including pathogens such as Pseudomonas aeruginosa, Klebsiella pneumoniae, Staphylococcus epidermidis, Candida parapsilosis, and Aspergillus sydowii, demonstrated antimicrobial activity over 15 days across all substrates. Biofilm quantification by Crystal Violet Assay revealed inhibition exceeding 97% for bacterial strains and 96% for fungal species at day 15. By preventing both bacterial and fungal colonization on diverse materials, these results validate silver-functionalized surfaces as an effective and bio sustainable approach to combat healthcare-associated infections and antimicrobial resistance. This strategy holds significant promise for translation into clinical settings, hospital air filtration systems, and wound care applications, aligning with Antimicrobial Stewardship and One Health principles. Full article

The global transition toward plant-based diets has driven the inclusion and legumes as primary sources of proteins and micronutrients. However, the raw whole seed hosts complex matrices of antinutritional factors and crystalline starch arrangements that limit proteolytic digestibility, chelate essential minerals, and induce accelerated postprandial glycemic responses. Conventional culinary and thermal treatments applied in isolation are frequently insufficient to disrupt the physicochemical matrix of the seeds, leaving critical gaps regarding how to sustainably optimize mineral bioaccessibility and convert water-soluble starches into stable slowly digestible fractions. This scoping review synthesizes analytical evidence demonstrating that targeted fermentative bioprocessing acts as a microstructural modulator. However, these biochemical outcomes are not unidirectional; the expansion of nutritional value is strictly governed by a complex interplay of substrate properties, process moisture, pH adjustments, and thermal pretreatments in plant defense frameworks and spatially reorganizing starch polymers. Microbial organic acid production and the mechanical penetration of fungal hyphae promote a 90–100% degradation and elimination of phytates and condensed tannins, eliminating non-digestible galacto-oligosaccharides and inactivating trypsin inhibitors. These mechanisms optimize phytate-to-mineral molar ratios, doubling the bioaccessibility of iron, zinc, and calcium in the digestive aqueous phases, while microbial beta-glucosidase expression bioconverts conjugated glycosides into free aglycones with high antioxidant activity. Simultaneously, the induction of molecular retrogradation drives continuous increases in the resistant starch fraction, inducing significant reductions in the hydrolysis index and lowering the predictive glycemic index to low thresholds. These findings consolidate controlled fermentation as a viable biotechnological intervention, providing structural guidelines for the rational design of functional foods, biofortified baked goods, and vegan beverages with high digestive tolerance. Full article

Introduction: Candidemia is the most significant invasive fungal disease in critically ill patients. As a shift towards non-albicans Candida (NAC) species has been observed in recent years, differentiation among Candida species is essential for appropriate therapeutic management and improved prognosis. This study evaluated trends in the epidemiology of candidemia, species-specific characteristics, treatment practices, and mortality in a multidisciplinary Greek intensive care unit (ICU). Materials and Methods: In this single-center retrospective observational study, 90 ICU patients with candidemia were evaluated. Clinical characteristics, infection-related factors, treatment practices, and outcomes were compared according to isolated Candida species and patient survival. Results: C. parapsilosis accounted for the majority of isolates (33.7%; 41.9% fluconazole-resistant), followed by C. albicans (31.5%) and Candidozyma auris (23.9%). No significant differences in co-morbidities, origin of candidemia, or treatment-related factors were identified. However, NAC bloodstream infections occurred significantly later during ICU hospitalization, were associated with lower disease severity, and were preceded by nearly five-fold higher exposure to antifungal agents before candidemia onset. Overall, the ICU mortality rate was 53.3%. No significant differences were observed among species-specific mortality rates. Neither prompt initiation of antifungal therapy nor the antifungal class administered was associated with improved survival. Conclusions: NAC species predominated among candidemia episodes in critically ill patients, with C. parapsilosis emerging as the most frequent isolate and exhibiting substantial fluconazole resistance. Mortality remained high and did not differ significantly according to species. Treatment timing and antifungal class were not associated with outcome, highlighting the need for continued surveillance and optimized management strategies in the ICU. Full article

Plant-pathogenic bacteria threaten crop productivity and quality, yet chemical options remain limited compared with those for fungal and oomycete diseases. Current management relies mainly on copper bactericides, limited antibiotics, induced-resistance agents, biocontrol and resistant cultivars. However, copper and streptomycin resistance, efflux-mediated multidrug tolerance and rapid pathogen adaptation have weakened these strategies. Target-oriented research provides a framework for exploring agricultural antibacterials, anti-virulence agents, anti-colonization strategies, resistance sensitizers and host-resistance interventions, but many of these approaches remain conceptual, model-system, greenhouse or medical-bacteriology-derived rather than proven field solutions. This review classifies bacterial control targets into two interconnected groups: growth-essential targets, including peptidoglycan biosynthesis, membrane/envelope systems, nucleic-acid processes, protein synthesis, metabolism, nutrient transport and cell division; and anti-virulence/anti-adaptation targets, including secretion systems, quorum sensing, biofilms, motility, adhesion, cell-wall-degrading enzymes, tolerance systems, oxidative-stress responses and host susceptibility factors. Using “Candidatus Liberibacter asiaticus” (CLas) as a case study, genome annotation and infection-stage transcript-abundance data prioritized Sec-dependent secretion, outer-membrane/surface proteins, Bam assembly, nutrient transporters, Clp proteostasis, redox adaptation and core cellular processes as candidate target classes. Envelope-associated, secretion/anti-virulence, nutrient-acquisition and stress-sensitization modules may represent potential directions for downstream validation, but CLas candidates remain hypothesis-generating priorities requiring validation for essentiality, conservation, druggability, delivery feasibility, crop safety and field performance. Full article

The DUF538 gene family, harboring unknown functional proteins, has been reported to take active roles in plant development and response to adversities, while few studies of genome-wide identification and functional verification have been performed in cotton. Hence, two ancestral diploid species, G. arboretum and G. raimondii, and two cultivated tetraploid ones, G. hirsutum and G. barbadense, were chosen in this study to investigate the cotton DUF538 gene family, resulting in 37, 37, 70, and 70 members identified, respectively. A phylogenetic tree was constructed on these cotton DUF538 genes, together with 22 A. thaliana ones, which were divided into seven groups unevenly distributed across nearly all chromosomes. High-degree conservatism, while rich in diversity, was separately observed in gene structure and conserved motif analyses between the same groups and different groups, and a great number of gene-replication events were detected from intraspecific and interspecific collinearity analyses, implying this was the driving force for DUF538 family expansion. Multiple cis-acting elements relevant to adversity-stress responses were found in the promoter region, which were consistent with the transcriptome expression analyses in response to low-temperature and drought stress and Verticillium wilt infection. Coincidentally, GhDUF538-7 showed the core position in the protein–protein interaction network and was identified in the overlapping region of the interval of four reported VW resistance-related QTLs. The gene function of GhDUF538-7 was verified via gene cloning, relative expression-pattern detection, and virus-induced gene silencing (VIGS) experiment. The TRV:DUF538-7 plants showed more serious VW symptoms, significantly severe disease indices, relatively higher fungal biomass, and increased brown vascular bundles compared with TRV:00 plants. Significantly lower expression levels of marker genes PR4 and MYC2 in jasmonate signaling pathways indicated GhDUF538-7 as a potentially positive regulatory factor in plant defense via hormone signal transduction. This study not only broadened the research perspective of evolution and functional differentiation of the cotton DUF538 gene family, but it also revealed the cooperative relationship between DUF538-7 and the JA pathway for further molecular mechanisms of cotton resistance to VW infection. Full article

Wheat (Triticum aestivum L.) is an economically important cereal crop. Its genetic diversity is a prerequisite for successful breeding for resistance to leaf and stem rust, as well as for other important traits. Therefore, the main objective of the study was to determine the level of genetic diversity of a file of 185 wheat accessions chosen to represent a wide range of resistance levels to leaf and stem rusts. They were evaluated at two locations in three years (2023–2025) for leaf and stem rust resistance by means of visual evaluation and fungus content using real-time PCR. BLUP values were then computed from these multi-environmental data. In addition, data on other traits such as heading time, plant height, and grain quality were collected. In the PCA, grain quality variables represented the first factor, explaining 41% of the total variability. Rust resistance was mainly associated with the second and the third factor. Population analysis revealed primary two (K = 2) and secondary six (K = 6) clusters, computed by using 13,274 DArT markers. The correlation between genotype and phenotype data was high (R = 0.89) when all traits were analyzed, and lower (R = 0.58) when only leaf and stem rust resistance variables were considered. Genetic diversity was also studied through an association analysis between markers and phenotypic traits using GLMs and MLMs. As a result, 300 statistically significant marker-trait associations (MTAs) were identified (p ≤ 3.77 × 10⁻⁶). Of these MTAs, 180 were associated with rust resistance variables and 120 with other traits. A BLAST search of rust resistance MTAs identified 128 putative genes; 47 of them can be taken for candidate genes related to fungal resistance. The results show that association analysis can help to explain the genetic diversity of selected wheat accessions, and that leaf and stem rust resistance are complex traits involving many non-specific resistance genes. Full article