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Search Results (264)

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Keywords = freshwater ecosystem monitoring

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31 pages, 5558 KiB  
Article
Canals, Contaminants, and Connections: Exploring the Urban Exposome in a Tropical River System
by Alan D. Ziegler, Theodora H. Y. Lee, Khajornkiat Srinuansom, Teppitag Boonta, Jongkon Promya and Richard D. Webster
Urban Sci. 2025, 9(8), 302; https://doi.org/10.3390/urbansci9080302 - 4 Aug 2025
Abstract
Emerging and persistent contaminants (EPCs) were detected at high concentrations in Chiang Mai’s Mae Kha Canal, identifying urban waterways as important sources of pollution in the Ping River system in northern Thailand. Maximum levels of metformin (20,000 ng/L), fexofenadine (15,900 ng/L), gabapentin (12,300 [...] Read more.
Emerging and persistent contaminants (EPCs) were detected at high concentrations in Chiang Mai’s Mae Kha Canal, identifying urban waterways as important sources of pollution in the Ping River system in northern Thailand. Maximum levels of metformin (20,000 ng/L), fexofenadine (15,900 ng/L), gabapentin (12,300 ng/L), sucralose (38,000 ng/L), and acesulfame (23,000 ng/L) point to inadequately treated wastewater as a plausible contributor. Downstream enrichment patterns relative to upstream sites highlight the cumulative impact of urban runoff. Five compounds—acesulfame, gemfibrozil, fexofenadine, TBEP, and caffeine—consistently emerged as reliable tracers of urban wastewater, forming a distinct chemical fingerprint of the riverine exposome. Median EPC concentrations were highest in Mae Kha, lower in other urban canals, and declined with distance from the city, reflecting spatial gradients in urban density and pollution intensity. Although most detected concentrations fell below predicted no-effect thresholds, ibuprofen frequently approached or exceeded ecotoxicological benchmarks and may represent a compound of ecological concern. Non-targeted analysis revealed a broader “chemical cocktail” of unregulated substances—illustrating a witches’ brew of pollution that likely escapes standard monitoring efforts. These findings demonstrate the utility of wide-scope surveillance for identifying key compounds, contamination hotspots, and spatial gradients in mixed-use watersheds. They also highlight the need for integrated, long-term monitoring strategies that address diffuse, compound mixtures to safeguard freshwater ecosystems in rapidly urbanizing regions. Full article
29 pages, 3303 KiB  
Review
Nanoplastics (NPs): Environmental Presence, Ecological Implications, and Mitigation Approaches
by Vyoma Jani and Shenghua Wu
Microplastics 2025, 4(3), 48; https://doi.org/10.3390/microplastics4030048 - 4 Aug 2025
Abstract
Nanoplastics (NPs), the tiniest and one of the most problematic fractions of plastic pollution, present dangers because of their size, reactivity, and ecosystem interactions. This review highlights the distinct characteristics, sources, routes, and ecological effects of NPs, a substantial subgroup of plastic pollution. [...] Read more.
Nanoplastics (NPs), the tiniest and one of the most problematic fractions of plastic pollution, present dangers because of their size, reactivity, and ecosystem interactions. This review highlights the distinct characteristics, sources, routes, and ecological effects of NPs, a substantial subgroup of plastic pollution. With a focus on their ecological and toxicological implications, this review highlights the unique qualities of NPs and their functions in wastewater and urban runoff systems. The analysis of NPs’ entry points into terrestrial, aquatic, and atmospheric ecosystems reveals difficulties with detection and quantification that make monitoring more difficult. Filtration technologies, adsorption-based techniques, and membrane bioreactors are examples of advanced technical solutions emphasized as efficient NP mitigation measures that can integrated into current infrastructure. Environmental effects are examined, including toxicological hazards to organisms in freshwater, terrestrial, and marine environments, bioaccumulation, and biomagnification. This analysis emphasizes the serious ecological problems that NPs present and the necessity of using civil and environmental engineering techniques to improve detection techniques, enact stronger laws, and encourage public participation. Full article
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15 pages, 3267 KiB  
Article
Monitoring and Analyzing Aquatic Vegetation Using Sentinel-2 Imagery Time Series: A Case Study in Chimaditida Shallow Lake in Greece
by Maria Kofidou and Vasilios Ampas
Limnol. Rev. 2025, 25(3), 35; https://doi.org/10.3390/limnolrev25030035 - 1 Aug 2025
Viewed by 103
Abstract
Aquatic vegetation plays a crucial role in freshwater ecosystems by providing habitats, regulating water quality, and supporting biodiversity. This study aims to monitor and analyze the dynamics of aquatic vegetation in Chimaditida Shallow Lake, Greece, using Sentinel-2 satellite imagery, with validation from field [...] Read more.
Aquatic vegetation plays a crucial role in freshwater ecosystems by providing habitats, regulating water quality, and supporting biodiversity. This study aims to monitor and analyze the dynamics of aquatic vegetation in Chimaditida Shallow Lake, Greece, using Sentinel-2 satellite imagery, with validation from field measurements. Data processing was performed using Google Earth Engine and QGIS. The study focuses on discriminating and mapping two classes of aquatic surface conditions: areas covered with Floating and Emergent Aquatic Vegetation and open water, covering all seasons from 1 March 2024, to 28 February 2025. Spectral bands such as B04 (red), B08 (near infrared), B03 (green), and B11 (shortwave infrared) were used, along with indices like the Modified Normalized Difference Water Index and Normalized Difference Vegetation Index. The classification was enhanced using Otsu’s thresholding technique to distinguish accurately between Floating and Emergent Aquatic Vegetation and open water. Seasonal fluctuations were observed, with significant peaks in vegetation growth during the summer and autumn months, including a peak coverage of 2.08 km2 on 9 September 2024 and a low of 0.00068 km2 on 28 December 2024. These variations correspond to the seasonal growth patterns of Floating and Emergent Aquatic Vegetation, driven by temperature and nutrient availability. The study achieved a high overall classification accuracy of 89.31%, with producer accuracy for Floating and Emergent Aquatic Vegetation at 97.42% and user accuracy at 95.38%. Validation with Unmanned Aerial Vehicle-based aerial surveys showed a strong correlation (R2 = 0.88) between satellite-derived and field data, underscoring the reliability of Sentinel-2 for aquatic vegetation monitoring. Findings highlight the potential of satellite-based remote sensing to monitor vegetation health and dynamics, offering valuable insights for the management and conservation of freshwater ecosystems. The results are particularly useful for governmental authorities and natural park administrations, enabling near-real-time monitoring to mitigate the impacts of overgrowth on water quality, biodiversity, and ecosystem services. This methodology provides a cost-effective alternative for long-term environmental monitoring, especially in regions where traditional methods are impractical or costly. Full article
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11 pages, 711 KiB  
Article
Cadmium Accumulation and Regulation in the Freshwater Mussel Anodonta woodiana
by Xiubao Chen, Chao Song, Jiazhen Jiang, Tao Jiang, Junren Xue, Ibrahim Bah, Mengying Gu, Meiyi Wang and Shunlong Meng
Toxics 2025, 13(8), 646; https://doi.org/10.3390/toxics13080646 - 30 Jul 2025
Viewed by 151
Abstract
Cadmium (Cd) pollution poses a serious threat to freshwater ecosystems. The freshwater mussel Anodonta woodiana is increasingly used as a bioindicator for monitoring Cd pollution in aquatic environments. However, the primary routes of Cd accumulation in A. woodiana remain unclear, and the molecular [...] Read more.
Cadmium (Cd) pollution poses a serious threat to freshwater ecosystems. The freshwater mussel Anodonta woodiana is increasingly used as a bioindicator for monitoring Cd pollution in aquatic environments. However, the primary routes of Cd accumulation in A. woodiana remain unclear, and the molecular regulatory mechanisms underlying Cd accumulation are poorly understood. To address these gaps, this study employed a novel stable isotope dual-tracer technique to trace Cd from water (waterborne 112Cd) and the green alga Chlorella vulgaris (dietary 113Cd) during the simultaneous exposure experiment. Comparative transcriptomic analysis was then conducted to characterize molecular responses in A. woodiana following Cd exposure. The results showed that although newly accumulated 112Cd and 113Cd increased with exposure concentration and duration, the relative importance of 112Cd (91.6 ± 2.8%) was significantly higher than that of 113Cd (8.4 ± 2.8%) (p < 0.05). Cd exposure induced differentially expressed genes primarily enriched in the metabolic processes, cellular processes, and/or the ubiquitin-mediated proteolysis pathway. Within the ubiquitin-mediated proteolysis pathway, TRIP12 (E3 ubiquitin-protein ligase TRIP12) and Cul5 (cullin-5) were significantly upregulated. The findings will provide critical insights for interpreting Cd biomonitoring data in freshwater environments using mussels as bioindicators. Full article
(This article belongs to the Special Issue The Impact of Heavy Metals on Aquatic Ecosystems)
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25 pages, 3102 KiB  
Article
Rainfall Drives Fluctuating Antibiotic Resistance Gene Levels in a Suburban Freshwater Lake
by Jack Roddey, Karlen Enid Correa Velez and R. Sean Norman
Water 2025, 17(15), 2260; https://doi.org/10.3390/w17152260 - 29 Jul 2025
Viewed by 347
Abstract
Antibiotic resistance genes (ARGs) in suburban freshwater ecosystems pose a growing public health concern by potentially reducing the effectiveness of medical treatments. This study investigated how rainfall influences ARG dynamics in Lake Katherine, a 62-hectare suburban lake in Columbia, South Carolina, over one [...] Read more.
Antibiotic resistance genes (ARGs) in suburban freshwater ecosystems pose a growing public health concern by potentially reducing the effectiveness of medical treatments. This study investigated how rainfall influences ARG dynamics in Lake Katherine, a 62-hectare suburban lake in Columbia, South Carolina, over one year. Surface water was collected under both dry and post-rain conditions from three locations, and ARGs were identified using metagenomic sequencing. Statistical models revealed that six of nine ARG classes with sufficient data showed significant responses to rainfall. Three classes, Bacitracin, Aminoglycoside, and Unclassified, were more abundant after rainfall, while Tetracycline, Multidrug, and Peptide resistance genes declined. Taxonomic analysis showed that members of the Pseudomonadota phylum, especially Betaproteobacteria, were prevalent among ARG-carrying microbes. These findings suggest that rainfall can alter the distribution of ARGs in suburban lakes, highlighting the importance of routine monitoring and water management strategies to limit the environmental spread of antibiotic resistance. Full article
(This article belongs to the Special Issue Water Safety, Ecological Risk and Public Health)
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18 pages, 5229 KiB  
Article
Exploring the Spectral Variability of Estonian Lakes Using Spaceborne Imaging Spectroscopy
by Alice Fabbretto, Mariano Bresciani, Andrea Pellegrino, Kersti Kangro, Anna Joelle Greife, Lodovica Panizza, François Steinmetz, Joel Kuusk, Claudia Giardino and Krista Alikas
Appl. Sci. 2025, 15(15), 8357; https://doi.org/10.3390/app15158357 - 27 Jul 2025
Viewed by 279
Abstract
This study investigates the potential of spaceborne imaging spectroscopy to support the analysis of the status of two major Estonian lakes, i.e., Lake Peipsi and Lake Võrtsjärv, using data from the PRISMA and EnMAP missions. The study encompasses nine specific applications across 12 [...] Read more.
This study investigates the potential of spaceborne imaging spectroscopy to support the analysis of the status of two major Estonian lakes, i.e., Lake Peipsi and Lake Võrtsjärv, using data from the PRISMA and EnMAP missions. The study encompasses nine specific applications across 12 satellite scenes, including the validation of remote sensing reflectance (Rrs), optical water type classification, estimation of phycocyanin concentration, detection of macrophytes, and characterization of reflectance for lake ice/snow coverage. Rrs validation, which was performed using in situ measurements and Sentinel-2 and Sentinel-3 as references, showed a level of agreement with Spectral Angle < 16°. Hyperspectral imagery successfully captured fine-scale spatial and spectral features not detectable by multispectral sensors, in particular it was possible to identify cyanobacterial pigments and optical variations driven by seasonal and meteorological dynamics. Through the combined use of in situ observations, the study can serve as a starting point for the use of hyperspectral data in northern freshwater systems, offering new insights into ecological processes. Given the increasing global concern over freshwater ecosystem health, this work provides a transferable framework for leveraging new-generation hyperspectral missions to enhance water quality monitoring on a global scale. Full article
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29 pages, 9060 KiB  
Article
Satellite-Based Prediction of Water Turbidity Using Surface Reflectance and Field Spectral Data in a Dynamic Tropical Lake
by Elsa Pereyra-Laguna, Valeria Ojeda-Castillo, Enrique J. Herrera-López, Jorge del Real-Olvera, Leonel Hernández-Mena, Ramiro Vallejo-Rodríguez and Jesús Díaz
Remote Sens. 2025, 17(15), 2595; https://doi.org/10.3390/rs17152595 - 25 Jul 2025
Viewed by 167
Abstract
Turbidity is a crucial parameter for assessing the ecological health of aquatic ecosystems, particularly in shallow tropical lakes that are subject to climatic variability and anthropogenic pressures. Lake Chapala, the largest freshwater body in Mexico, has experienced persistent turbidity and sediment influx since [...] Read more.
Turbidity is a crucial parameter for assessing the ecological health of aquatic ecosystems, particularly in shallow tropical lakes that are subject to climatic variability and anthropogenic pressures. Lake Chapala, the largest freshwater body in Mexico, has experienced persistent turbidity and sediment influx since the 1970s, primarily due to upstream erosion and reduced water inflow. In this study, we utilized Landsat satellite imagery in conjunction with near-synchronous in situ reflectance measurements to monitor spatial and seasonal turbidity patterns between 2023 and 2025. The surface reflectance was radiometrically corrected and validated using spectroradiometer data collected across eight sampling sites in the eastern sector of the lake, the area where the highest rates of horizontal change in turbidity occur. Based on the relationship between near-infrared reflectance and field turbidity, second-order polynomial models were developed for spring, fall, and the composite annual model. The annual model demonstrated acceptable performance (R2 = 0.72), effectively capturing the spatial variability and temporal dynamics of the average annual turbidity for the whole lake. Historical turbidity data (2000–2018) and a particular case study in 2016 were used as a reference for statistical validation, confirming the model’s applicability under varying hydrological conditions. Our findings underscore the utility of empirical remote-sensing models, supported by field validation, for cost-effective and scalable turbidity monitoring in dynamic tropical lakes with limited monitoring infrastructure. Full article
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22 pages, 2461 KiB  
Article
Environmental Drivers of Phytoplankton Structure in a Semi-Arid Reservoir
by Fangze Zi, Tianjian Song, Wenxia Cai, Jiaxuan Liu, Yanwu Ma, Xuyuan Lin, Xinhong Zhao, Bolin Hu, Daoquan Ren, Yong Song and Shengao Chen
Biology 2025, 14(8), 914; https://doi.org/10.3390/biology14080914 - 22 Jul 2025
Viewed by 303
Abstract
Artificial reservoirs in arid regions provide unique ecological environments for studying the spatial and functional dynamics of plankton communities under the combined stressors of climate change and anthropogenic activities. This study conducted a systematic investigation of the phytoplankton community structure and its environmental [...] Read more.
Artificial reservoirs in arid regions provide unique ecological environments for studying the spatial and functional dynamics of plankton communities under the combined stressors of climate change and anthropogenic activities. This study conducted a systematic investigation of the phytoplankton community structure and its environmental drivers in 17 artificial reservoirs in the Ili region of Xinjiang in August and October 2024. The Ili region is located in the temperate continental arid zone of northwestern China. A total of 209 phytoplankton species were identified, with Bacillariophyta, Chlorophyta, and Cyanobacteria comprising over 92% of the community, indicating an oligarchic dominance pattern. The decoupling between numerical dominance (diatoms) and biomass dominance (cyanobacteria) revealed functional differentiation and ecological complementarity among major taxa. Through multivariate analyses, including Mantel tests, principal component analysis (PCA), and redundancy analysis (RDA), we found that phytoplankton community structures at different ecological levels responded distinctly to environmental gradients. Oxidation-reduction potential (ORP), dissolved oxygen (DO), and mineralization parameters (EC, TDS) were key drivers of morphological operational taxonomic unit (MOTU). In contrast, dominant species (SP) were more responsive to salinity and pH. A seasonal analysis demonstrated significant shifts in correlation structures between summer and autumn, reflecting the regulatory influence of the climate on redox conditions and nutrient solubility. Machine learning using the random forest model effectively identified core taxa (e.g., MOTU1 and SP1) with strong discriminatory power, confirming their potential as bioindicators for water quality assessments and the early warning of ecological shifts. These core taxa exhibited wide spatial distribution and stable dominance, while localized dominant species showed high sensitivity to site-specific environmental conditions. Our findings underscore the need to integrate taxonomic resolution with functional and spatial analyses to reveal ecological response mechanisms in arid-zone reservoirs. This study provides a scientific foundation for environmental monitoring, water resource management, and resilience assessments in climate-sensitive freshwater ecosystems. Full article
(This article belongs to the Special Issue Wetland Ecosystems (2nd Edition))
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23 pages, 1285 KiB  
Review
An Exploratory Review of Microplastic Pollution, Associated Microbiomes and Pathogens in Water
by Paulina Cholewińska, Konrad Wojnarowski, Hanna Moniuszko, Przemysław Pokorny and Dušan Palić
Appl. Sci. 2025, 15(15), 8128; https://doi.org/10.3390/app15158128 - 22 Jul 2025
Viewed by 343
Abstract
Microplastic particles (MPs) are an emerging global pollutant of increasing concern due to their widespread occurrence, persistence, and multifaceted impact on aquatic ecosystems. This study provides a comprehensive review of peer-reviewed literature from 2011 to 2025, analysing the presence, distribution, and microbiological associations [...] Read more.
Microplastic particles (MPs) are an emerging global pollutant of increasing concern due to their widespread occurrence, persistence, and multifaceted impact on aquatic ecosystems. This study provides a comprehensive review of peer-reviewed literature from 2011 to 2025, analysing the presence, distribution, and microbiological associations of MPs in surface waters across five continents. The findings confirm that MPs are present in both marine and freshwater systems, with concentrations varying by region, hydrology, and proximity to anthropogenic sources. Polyethylene and polypropylene were identified as the most common polymers, often enriched in river mouths, estuaries, and aquaculture zones. A key focus of this review is the plastisphere—microbial biofilms colonizing MPs—which includes both environmental and pathogenic bacteria such as Vibrio, Pseudomonas, and Acinetobacter. Notably, MPs serve as vectors for the spread of antibiotic resistance genes (ARGs), including sul1, tetA and ermF, and β-lactamase genes like blaCTX-M. This highlights their role in enhancing horizontal gene transfer and microbial dissemination. The results emphasize the need for standardized monitoring protocols and further interdisciplinary research. In light of the One Health approach, understanding the microbial dimension of MP pollution is essential for managing risks to environmental and public health. Full article
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21 pages, 1415 KiB  
Review
Next-Generation River Health Monitoring: Integrating AI, GIS, and eDNA for Real-Time and Biodiversity-Driven Assessment
by Su-Ok Hwang, Byeong-Hun Han, Hyo-Gyeom Kim and Baik-Ho Kim
Hydrobiology 2025, 4(3), 19; https://doi.org/10.3390/hydrobiology4030019 - 16 Jul 2025
Viewed by 498
Abstract
Freshwater ecosystems face escalating degradation, demanding real-time, scalable, and biodiversity-aware monitoring solutions. This review proposes an integrated framework combining artificial intelligence (AI), geographic information systems (GISs), and environmental DNA (eDNA) to overcome these limitations and support next-generation river health assessment. The AI-GIS-eDNA system [...] Read more.
Freshwater ecosystems face escalating degradation, demanding real-time, scalable, and biodiversity-aware monitoring solutions. This review proposes an integrated framework combining artificial intelligence (AI), geographic information systems (GISs), and environmental DNA (eDNA) to overcome these limitations and support next-generation river health assessment. The AI-GIS-eDNA system was applied to four representative river basins—the Mississippi, Amazon, Yangtze, and Danube—demonstrating enhanced predictive accuracy (up to 94%), spatial pollution mapping precision (85–95%), and species detection sensitivity (+18–30%) compared to conventional methods. Furthermore, the framework reduces operational costs by up to 40%, highlighting its potential for cost-effective deployment in low-resource regions. Despite its strengths, challenges persist in the areas of regulatory acceptance, data standardization, and digital infrastructure. We recommend legal recognition of AI and eDNA indicators, investment in explainable AI (XAI), and global data harmonization initiatives. The integrated AI-GIS-eDNA framework offers a scalable and policy-relevant tool for adaptive freshwater governance in the Anthropocene. Full article
(This article belongs to the Special Issue Ecosystem Disturbance in Small Streams)
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23 pages, 25321 KiB  
Article
Spatiotemporal Monitoring of Cyanobacterial Blooms and Aquatic Vegetation in Jiangsu Province Using AI Earth Platform and Sentinel-2 MSI Data (2019–2024)
by Xin Xie, Ting Song, Ge Liu, Tiantian Wang and Qi Yang
Remote Sens. 2025, 17(13), 2295; https://doi.org/10.3390/rs17132295 - 4 Jul 2025
Viewed by 313
Abstract
Cyanobacterial blooms and aquatic vegetation dynamics are critical indicators of freshwater ecosystem health, increasingly shaped by climate change, nutrient enrichment, and ecological restoration efforts. Here, we present an automated monitoring system optimized for small- and medium-sized lakes. This system integrates phenology-based algorithms with [...] Read more.
Cyanobacterial blooms and aquatic vegetation dynamics are critical indicators of freshwater ecosystem health, increasingly shaped by climate change, nutrient enrichment, and ecological restoration efforts. Here, we present an automated monitoring system optimized for small- and medium-sized lakes. This system integrates phenology-based algorithms with Sentinel-2 MSI imagery, leveraging the AI Earth (AIE) platform developed by Alibaba DAMO Academy. Applied to monitor 12 ecologically sensitive lakes and reservoirs in Jiangsu Province, China, the system enables multi-year tracking of spatiotemporal changes from 2019 to 2024. A clear north-south gradient in cyanobacterial bloom intensity was observed, with southern lakes exhibiting higher bloom levels. Although bloom intensity decreased in lakes such as Changdang, Yangcheng, and Dianshan, Ge Lake displayed fluctuating patterns. In contrast, ecological restoration efforts in Cheng and Yuandang Lakes led to substantial increases in bloom intensity in 2024, with affected areas reaching 33.16% and 33.11%, respectively. Although bloom intensity remained low in northern lakes, increases were recorded in Hongze, Gaoyou, and Luoma Lakes after 2023, particularly in Hongze Lake, where bloom coverage surged to 3.29% in 2024. Aquatic vegetation dynamics displayed contrasting trends. In southern lakes—particularly Cheng, Dianshan, Yuandang, and Changdang Lakes—vegetation coverage significantly increased, with Changdang Lake reaching 44.56% in 2024. In contrast, northern lakes, including Gaoyou, Luoma, and Hongze, experienced a long-term decline in vegetation coverage. By 2024, compared to 2019, coverage in Gaoyou, Luoma, and Hongze Lakes decreased by 11.28%, 16.02%, and 47.32%, respectively. These declines are likely linked to increased grazing pressure following fishing bans, which may have disrupted vegetation dynamics and reduced their ability to suppress cyanobacterial blooms. These findings provide quantitative evidence supporting adaptive lake restoration strategies and underscore the effectiveness of satellite-based phenological monitoring in assessing freshwater ecosystem health. Full article
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19 pages, 863 KiB  
Review
Microplastic Pollution in China’s Aquatic Systems: Spatial Distribution, Transport Pathways, and Controlling Strategies
by Zhancheng Wu, Juzhuang Wang, Shengwang Yu, Qian Sun and Yulai Han
Microplastics 2025, 4(3), 41; https://doi.org/10.3390/microplastics4030041 - 3 Jul 2025
Viewed by 821
Abstract
Microplastics (MPs) have emerged as a critical environmental challenge in China’s aquatic ecosystems, driven by rapid industrialization and population growth. This review synthesizes recent findings on the abundance, morphology, and polymer types of MPs in China’s freshwater systems (rivers, lakes, reservoirs) and coastal [...] Read more.
Microplastics (MPs) have emerged as a critical environmental challenge in China’s aquatic ecosystems, driven by rapid industrialization and population growth. This review synthesizes recent findings on the abundance, morphology, and polymer types of MPs in China’s freshwater systems (rivers, lakes, reservoirs) and coastal marine environments. Spatial analysis reveals significant variability in MP abundance, ranging from 0.1 items/L in Tibet’s Lalu Wetland to 30.8 items/L in Beijing’s Qinghe River, with polypropylene (PP) and polyethylene (PE) dominating polymer profiles. Coastal regions exhibit distinct contamination patterns, with the Yellow Sea (5.3 ± 2.0 items/L) and the South China Sea (180 ± 80 items/m3) showing the highest MP loads, primarily as fibers and fragments. Fluvial transport, atmospheric deposition, and coastal anthropogenic activities (e.g., fisheries, tourism) are identified as major pathways for marine MP influx. Secondary MPs from degraded plastics and primary MPs from industrial/domestic effluents pose synergistic risks through the adsorption of heavy metals and organic pollutants. Human exposure routes—ingestion, inhalation, and dermal contact—are linked to inflammatory, metabolic, and carcinogenic health outcomes. Policy interventions, including bans on microbeads and non-degradable plastics, demonstrate progress in pollution mitigation. This work underscores the urgency of integrated source control, advanced wastewater treatment, and transboundary monitoring to address MP contamination in aquatic ecosystems. Full article
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15 pages, 528 KiB  
Review
Water Monitoring Practices 2.0—Water Fleas as Key Species in Ecotoxicology and Risk Assessment
by Anne Leung, Emma Rowan, Flavia Melati Chiappara and Konstantinos Grintzalis
Limnol. Rev. 2025, 25(3), 30; https://doi.org/10.3390/limnolrev25030030 - 2 Jul 2025
Viewed by 296
Abstract
Humanity faces the great challenges arising from pollution and climate change which evidently lead to the irreversible effects observed on the planet. It is now more important than ever to monitor and safeguard the ecosystem as it has been highlighted by governments and [...] Read more.
Humanity faces the great challenges arising from pollution and climate change which evidently lead to the irreversible effects observed on the planet. It is now more important than ever to monitor and safeguard the ecosystem as it has been highlighted by governments and scientists. Conventional approaches for water pollution rely on the detection of chemicals in the environment. However, these descriptive observations when compared against water quality standards used as metrics for pollution are unable to predict pollution early or capture the extent of its impact. This weakness is reflected in the legislation and the thresholds for emerging pollutants such as pharmaceuticals and nanomaterials. To bridge the gap and to understand the underlying mechanisms for toxicity, research in the field of molecular ecotoxicology shifts more and more towards the integration of model systems, in silico approaches and molecular information as endpoints. Focusing on the freshwater ecosystem, daphnids are key species employed in risk assessment which are characterised as highly responsive to pollutants and physical stressors. The translation of molecular information describing the physiology of these organisms provides novel and sensitive metrics for pollution assessment. Full article
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10 pages, 687 KiB  
Data Descriptor
A DNA Barcode Dataset for the Aquatic Fauna of the Panama Canal: Novel Resources for Detecting Faunal Change in the Neotropics
by Kristin Saltonstall, Rachel Collin, Celestino Aguilar, Fernando Alda, Laura M. Baldrich-Mora, Victor Bravo, María Fernanda Castillo, Sheril Castro, Luis F. De León, Edgardo Díaz-Ferguson, Humberto A. Garcés, Eyda Gómez, Rigoberto G. González, Maribel A. González-Torres, Hector M. Guzman, Alexandra Hiller, Roberto Ibáñez, César Jaramillo, Klara L. Kaiser, Yulang Kam, Mayra Lemus Peralta, Oscar G. Lopez, Maycol E. Madrid C., Matthew J. Miller, Natalia Ossa-Hernandez, Ruth G. Reina, D. Ross Robertson, Tania E. Romero-Gonzalez, Milton Sandoval, Oris Sanjur, Carmen Schlöder, Ashley E. Sharpe, Diana Sharpe, Jakob Siepmann, David Strasiewsky, Mark E. Torchin, Melany Tumbaco, Marta Vargas, Miryam Venegas-Anaya, Benjamin C. Victor and Gustavo Castellanos-Galindoadd Show full author list remove Hide full author list
Data 2025, 10(7), 108; https://doi.org/10.3390/data10070108 - 2 Jul 2025
Viewed by 588
Abstract
DNA metabarcoding is a powerful biodiversity monitoring tool, enabling simultaneous assessments of diverse biological communities. However, its accuracy depends on the reliability of reference databases that assign taxonomic identities to obtained sequences. Here we provide a DNA barcode dataset for aquatic fauna of [...] Read more.
DNA metabarcoding is a powerful biodiversity monitoring tool, enabling simultaneous assessments of diverse biological communities. However, its accuracy depends on the reliability of reference databases that assign taxonomic identities to obtained sequences. Here we provide a DNA barcode dataset for aquatic fauna of the Panama Canal, a region that connects the Western Atlantic and Eastern Pacific oceans. This unique setting creates opportunities for trans-oceanic dispersal while acting as a modern physical dispersal barrier for some terrestrial organisms. We sequenced 852 specimens from a diverse array of taxa (e.g., fishes, zooplankton, mollusks, arthropods, reptiles, birds, and mammals) using COI, and in some cases, 12S and 16S barcodes. These data were collected for a variety of studies, many of which have sought to understand recent changes in aquatic communities in the Panama Canal. The DNA barcodes presented here are all from captured specimens, which confirms their presence in Panama and, in many cases, inside the Panama Canal. Both native and introduced taxa are included. This dataset represents a valuable resource for environmental DNA (eDNA) work in the Panama Canal region and across the Neotropics aimed at monitoring ecosystem health, tracking non-native and potentially invasive species, and understanding the ecology and distribution of these freshwater and euryhaline taxa. Full article
(This article belongs to the Special Issue Benchmarking Datasets in Bioinformatics, 2nd Edition)
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15 pages, 2327 KiB  
Article
Metabolic Costs of Emerging Contaminants: Cellular Energy Allocation in Zebrafish Embryos
by Bárbara S. Diogo, Daniela Rebelo, Sara C. Antunes and Sara Rodrigues
J. Xenobiot. 2025, 15(4), 99; https://doi.org/10.3390/jox15040099 - 29 Jun 2025
Cited by 1 | Viewed by 334
Abstract
The use of cellular energy allocation (CEA) as a physiological energetic biomarker is useful for detecting the sublethal effects of environmental contaminants. The CEA assesses the health and energy status of organisms, serving as a reliable indicator for monitoring the health of aquatic [...] Read more.
The use of cellular energy allocation (CEA) as a physiological energetic biomarker is useful for detecting the sublethal effects of environmental contaminants. The CEA assesses the health and energy status of organisms, serving as a reliable indicator for monitoring the health of aquatic ecosystems. This study aimed to evaluate the impact of emerging contaminants already listed as a priority for monitoring in freshwater ecosystems, namely sulfamethoxazole (0.156–2.50 mg/L), trimethoprim (25.0–400 mg/L), 4-chloroaniline (5.21–20.0 mg/L), and 3,4-dichloroaniline (0.38–4.00 mg/L), on the CEA of D. rerio embryos. A standard fish embryo toxicity test was conducted, and an adaptation of the allometric scaling approach was developed through the relationship between the size and the fresh weight of the embryos. All the compounds affected the fractions of the energy reserves (total carbohydrate, lipid, and protein contents) differently, with carbohydrates being the predominant energy fraction and the most responsive indicator. Although the energy consumed showed no significant changes, the CEA was notably altered after exposure to all the contaminants, indicating a direct connection to shifts in the available energy. The CEA alterations may indicate a reallocation of energy toward detoxification, combating the stress of contaminant exposure. Energy allocation biomarkers provide a comprehensive assessment of an organism’s physiological state, which is essential for evaluating emerging contaminants’ impacts, safeguarding aquatic ecosystems, and shaping effective environmental policies. Full article
(This article belongs to the Section Ecotoxicology)
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