Search Results (556)

Bubaline alphaherpesvirus 1 (BuHV-1) is a virus that belongs to the Varicellovirus genus within the Alphaherpesvirinae subfamily. While BuHV-1 infections in water buffaloes (Bubalus bubalis) are often subclinical, clinical manifestations have been reported. This study provides complete genome sequences of five BuHV-1 strains isolated in Argentina, marking the first genomic characterization of BuHV-1 from the Americas. Phylogenetic reconstructions based on whole-genome and coding sequences, along with analyses of glycoproteins C, D, and E, identified a distinct clade and divergent strains. Comparative genomic analyses with publicly available BuHV-1 and Bovine alphaherpesvirus 5 (BoHV-5) sequences showed nucleotide divergence of up to 1.3% among BuHV-1 strains, indicating significant intraspecific genetic diversity. Cross-neutralization assays revealed variable relationships between BuHV-1 and BoHV-5 strains. Some Argentinian BuHV-1 strains exhibited significant antigenic subtype differences compared to Bovine alphaherpesvirus 1 (BoHV-1). Recombination analyses uncovered events between BuHV-1 and bovine herpesviruses, suggesting a complex evolutionary history within mixed farming systems. The findings indicate that the monophyletic BuHV-1 clade, including the reference BuHV-1 isolate, is representative of the BuHV-1 species. The remaining strains, provisionally classified as BuHV-1 indeterminate (BuHV-1i), can be categorized based on specific clinical and antigenic properties. The identified heterogeneity has significant implications for diagnostic accuracy, vaccine development, and disease management strategies in buffalo populations worldwide. Full article

Portable near-infrared reflectance spectroscopy (NIRS) offers the opportunity of a rapid measurement of forage dry matter concentration, allowing producers to make faster adjustments in real time. This study compared dry matter (DM) concentration predictions of three units of a portable near-infrared reflectance spectrometer (pNIRS) with conventional forced-air oven drying (48 h at 60 °C) using corn forage and silage samples. Moreover, a common on-farm method (Koster tester) was also compared. The reflectance curve used by pNIRS to predict DM was obtained by scanning WPCS samples and developed by SciO. A total of 113 whole-plant corn forage (WPCF) and 27 whole-plant corn silage (WPCS) samples from 66 corn hybrids were obtained from three separate experiments conducted between 2018 and 2019. These three experiments were completely independent of each other, with sample collections over different periods. In Experiment 1, all treatments were tested in WPCF, and the DM concentration of the forced-air oven differed from Koster testers (35.4 vs. 34.3% DM, on average, respectively) and all three pNIRS units (35.4 vs. 30.7% DM, on average, respectively), with no differences among pNIRS. All treatments were positively correlated with the forced-air oven treatment DM values. Experiment 2 evaluated the Koster tester and pNIRS in WPCF on farms, and the Koster tester differed from pNIRS (37.2 vs. 33.3% DM, on average, respectively) treatments. All pNIRS were positively correlated with Koster tester treatment. In Experiment 3, all treatments were tested in WPCS, and the DM concentration of the forced-air oven was greater than other treatments (35.3 vs. 32.8% DM, on average, respectively). Overall, Koster tester predictions for both Experiments 1 and 3 were better correlated with the forced-air oven than pNIRS. Additionally, pNIRS showed a lower mean bias, although low coefficients of determination and concordance correlation were observed in Experiment 3 compared to Experiments 1 and 2, which might be related to the prediction curve. Further calibrations of the predictive curve with forage samples would be needed to reasonably estimate the DM concentration of WPCF, whereas a greater number of samples could account for the variations in WPCS due to large heterogeneity in particle composition (e.g., leaves, stem, and kernel), size, and distribution. Full article

Sensor-enabled digital twins (DTs) are reshaping precision dairy nutrition by seamlessly integrating real-time barn telemetry with advanced biophysical simulations in the cloud. Drawing insights from 122 peer-reviewed studies spanning 2010–2025, this systematic review reveals how DT architectures for dairy cattle are conceptualized, validated, and deployed. We introduce a novel five-dimensional classification framework—spanning application domain, modeling paradigms, computational topology, validation protocols, and implementation maturity—to provide a coherent comparative lens across diverse DT implementations. Hybrid edge–cloud architectures emerge as optimal solutions, with lightweight CNN-LSTM models embedded in collar or rumen-bolus microcontrollers achieving over 90% accuracy in recognizing feeding and rumination behaviors. Simultaneously, remote cloud systems harness mechanistic fermentation simulations and multi-objective genetic algorithms to optimize feed composition, minimize greenhouse gas emissions, and balance amino acid nutrition. Field-tested prototypes indicate significant agronomic benefits, including 15–20% enhancements in feed conversion efficiency and water use reductions of up to 40%. Nevertheless, critical challenges remain: effectively fusing heterogeneous sensor data amid high barn noise, ensuring millisecond-level synchronization across unreliable rural networks, and rigorously verifying AI-generated nutritional recommendations across varying genotypes, lactation phases, and climates. Overcoming these gaps necessitates integrating explainable AI with biologically grounded digestion models, federated learning protocols for data privacy, and standardized PRISMA-based validation approaches. The distilled implementation roadmap offers actionable guidelines for sensor selection, middleware integration, and model lifecycle management, enabling proactive rather than reactive dairy management—an essential leap toward climate-smart, welfare-oriented, and economically resilient dairy farming. Full article

Agroforestry systems (AFSs) enhance long-term carbon sequestration through tree biomass accumulation. As the European Union’s Carbon Farming Certification (CRCF) Regulation now recognizes AFSs in carbon farming (CF) schemes, accurate tree biomass estimation becomes essential for certification. This review examines field-destructive and remote sensing methods for estimating tree aboveground biomass (AGB) in AFSs, with a specific focus on their advantages, limitations, timing, and associated costs. Destructive methods, although accurate and necessary for developing and validating allometric equations, are time-consuming, costly, and labour-intensive. Conversely, satellite- and drone-based remote sensing offer scalable and non-invasive alternatives, increasingly supported by advances in machine learning and high-resolution imagery. Using data from the INNO4CFIs project, which conducted parallel destructive and remote measurements in an AFS in Tuscany (Italy), this study provides a novel quantitative comparison of the resources each method requires. The findings highlight that while destructive measurements remain indispensable for model calibration and new species assessment, their feasibility is limited by practical constraints. Meanwhile, remote sensing approaches, despite some accuracy challenges in heterogeneous AFSs, offer a promising path forward for cost-effective, repeatable biomass monitoring but in turn require reliable field data. The integration of both approaches might represent a valid strategy to optimize precision and resource efficiency in carbon farming applications. Full article

South Dongting Lake is an essential aquatic ecosystem that receives substantial water inflows from the Xiangjiang and Zishui Rivers. However, it is significantly impacted by human activities, including mining, smelting, and farming. These activities have led to serious contamination of the lake’s sediments with heavy metals (HMs). This study investigated the distribution, mobility, and influencing factors of HMs at the sediment–water interface. To this end, sediment samples were analyzed from three key regions (Xiangjiang River estuary, Zishui River estuary, and northeastern South Dongting Lake) using traditional sampling methods and Diffusive Gradients in Thin Films (DGT) technology. Analysis of fifteen HMs (Pb, Bi, Ni, As, Se, Cd, Sb, Mn, Zn, V, Cr, Cu, Tl, Co, and Fe) revealed significant spatial heterogeneity. The results showed that Cr, Cu, Pb, Bi, Ni, As, Se, Cd, Sb, Mn, Zn, and Fe exhibited high variability (CV > 0.20), whereas V, Tl, and Co demonstrated stable concentrations (CV < 0.20). Concentrations were found to exceed background values of the upper continental crust of eastern China (UCC), Yangtze River sediments (YZ), and Dongting Lake sediments (DT), particularly at the Xiangjiang estuary (XE) and in the northeastern regions. Speciation analysis revealed that V, Cr, Cu, Ni, and As were predominantly found in the residual fraction (F4), while Pb and Co were concentrated in the oxidizable fraction (F3), Mn and Zn appeared primarily in the exchangeable fractions (F1 and F2), and Cd was notably dominant in the exchangeable fraction (F1), suggesting a high potential for mobility. Additionally, DGT results confirmed a significant potential for the release of Pb, Zn, and Cd. Contamination assessment using the Pollution Load Index (PLI) and Geoaccumulation Index (Igeo) identified Pb, Bi, Ni, As, Se, Cd, and Sb as major pollutants. Among these, Bi and Cd were found to pose the highest risks. Furthermore, the Risk Assessment Code (RAC) and the Potential Ecological Risk Index (PERI) highlighted Cd as the primary ecological risk contributor, especially in the XE. The study identified sediment grain size, pH, electrical conductivity, and nutrient levels as the primary influencing factors. The PMF modeling revealed HM sources as mixed smelting/natural inputs, agricultural activities, natural weathering, and mining/smelting operations, suggesting that remediation should prioritize Cd control in the XE with emphasis on external inputs. Full article

Land use conversion to perennial cropland often degrades the soil structure and fertility, particularly under Mediterranean climatic conditions. This study assessed spatial and temporal dynamics of soil properties and tree responses to 3-year repeated mature compost additions in a citrus orchard. Digital soil mapping revealed strong baseline heterogeneity in texture, CEC, and Si pools. Compost application markedly increased total organic C and N levels, aggregate stability, and pH with noticeable changes after the first amendment, whereas a limited C storage potential was found following further additions. NDVI values of tree canopies monitored over a 3-year period showed significant time-dependent changes not correlated with the soil fertility variables, thus suggesting that multiple interrelated factors affect plant responses. The non-crystalline amorphous Si/total amorphous Si (_iSi:Si_amor) ratio is here proposed as a novel indicator of pedogenic alteration in disturbed agroecosystems. These findings highlight the importance of tailoring organic farming strategies to site-specific conditions and reinforce the value to combine C and Si pool analysis for long-term soil fertility assessment. Full article

To explore the characteristics of species diversity and phylogenetic diversity, as well as the dominant processes of community construction, in different forest types (deciduous broad-leaved forest, mixed coniferous and broad-leaved forest, and Chinese fir plantation) in subtropical regions, analyze the specific driving patterns of soil nutrients and other environmental factors on the formation of forest diversity in different forest types, and clarify the differences in response to environmental heterogeneity between natural forests and plantation forests. Based on 48 fixed monitoring plots of 50 m × 50 m in Shouchang Forest Farm, Jiande City, Zhejiang Province, woody plants with a diameter at breast height ≥5 cm were investigated. Species diversity indices (Margalef index, Shannon–Wiener index, Simpson index, and Pielou index), phylogenetic structure index (PD), and environmental factors were used to analyze the relationship between diversity characteristics and environmental factors through variance analysis, correlation analysis, and generalized linear models. Phylogenetic structural indices (NRI and NTI) were used, combined with a random zero model, to explore the mechanisms of community construction in different forest types. Research has found that (1) the deciduous broad-leaved forest had the highest species diversity (Margalef index of 4.121 ± 1.425) and phylogenetic diversity (PD index of 21.265 ± 7.796), significantly higher than the mixed coniferous and broad-leaved forest and the Chinese fir plantation (p < 0.05); (2) there is a significant positive correlation between species richness and phylogenetic diversity, with the best fit being AIC = 70.5636 and R² = 0.9419 in broad-leaved forests; however, the contribution of evenness is limited; (3) the specific effects of soil factors on different forest types: available phosphorus (AP) is negatively correlated with the diversity of deciduous broad-leaved forests (p < 0.05), total phosphorus (TP) promotes the diversity of coniferous and broad-leaved mixed forests, while the diversity of Chinese fir plantations is significantly negatively correlated with total nitrogen (TN); (4) the phylogenetic structure of three different forest types shows a divergent pattern in deciduous broad-leaved forests, indicating that competition and exclusion dominate the construction of deciduous broad-leaved forests; the aggregation mode of Chinese fir plantation indicates that environmental filtering dominates the construction of Chinese fir plantation; the mixed coniferous and broad-leaved forest is a transitional model, indicating that the mixed coniferous and broad-leaved forest is influenced by both stochastic processes and ecological niche processes. In different forest types in subtropical regions, the species and phylogenetic diversity of broad-leaved forests is significantly higher than in other forest types. The impact of soil nutrients on the diversity of different forest types varies, and the characteristics of community construction in different forest types are also different. This indicates the importance of protecting the original vegetation and provides a scientific basis for improving the ecological function of artificial forest ecosystems through structural adjustment. The research results have important practical guidance value for sustainable forest management and biodiversity conservation in the region. Full article

Enhancing farmers’ digital literacy is both an inevitable requirement for adapting to the digital age and an important measure for promoting the sustainable development of livestock and poultry manure resource utilization. This study surveyed and obtained data from 1047 farm households in Ningxia and Gansu, two provinces in China that have long implemented livestock manure resource utilization policies, from December 2023 to January 2024, and employed the binary probit model to analyze how digital literacy influences farmers’ willingness to adopt two livestock manure resource utilization modes, as well as to analyze the moderating role of three policy regulations. This paper also explores the heterogeneous results in different village forms and income groups. The results are as follows: (1) Digital literacy significantly and positively impacts farmers’ willingness to adopt both the “household collection” mode and the “livestock community” mode. For every one-unit increase in a farmer’s digital literacy, the probability of farmers’ willingness to adopt the “household collection” mode rises by 22 percentage points, and the probability of farmers’ willingness to adopt the “livestock community” mode rises by 19.8 percentage points. After endogeneity tests and robustness checks, the conclusion still holds. (2) Mechanism analysis results indicate that guiding policy and incentive policy have a positive moderation effect on the link between digital literacy and the willingness to adopt the “household collection” mode. Meanwhile, incentive policy also positively moderates the relationship between digital literacy and the willingness to adopt the “livestock community” mode. (3) Heterogeneity analysis results show that the positive effect of digital literacy on farmers’ willingness to adopt two livestock manure resource utilization modes is stronger in “tight-knit society” rural areas and in low-income households. (4) In further discussion, we find that digital literacy removes the information barriers for farmers, facilitating the conversion of willingness into behavior. The value of this study is as follows: this paper provides new insights for the promotion of livestock and poultry manure resource utilization policies in countries and regions similar to the development process of northwest China. Therefore, enhancing farmers’ digital literacy in a targeted way, strengthening the promotion of grassroots policies on livestock manure resource utilization, formulating diversified ecological compensation schemes, and establishing limited supervision and penalty rules can boost farmers’ willingness to adopt manure resource utilization models. Full article

The main soil type in the Sanjiang Plain of Northeast China, dryland albic soil is of great significance for studying nutrient distribution characteristics. This study focuses on 852 Farm in the typical dryland albic soil area of the Sanjiang Plain, using a combination of paired t-test, geostatistics, correlation analysis, and principal component analysis to systematically reveal the spatial differentiation of soil nutrients in the black soil layer and white clay layer of dryland albic soil, and to clarify the impact mechanism of plow layer nutrient characteristics on crop productivity. The results show that the nutrient content order in both the black and white clay layers is consistent: total potassium (TK) > organic matter (OM) > total nitrogen (TN) > total phosphorus (TP) > alkali-hydrolyzable nitrogen (HN) > available potassium (AK) > available phosphorus (AP). Both layers exhibit a spatial pattern of overall consistency and local differentiation, with spatial heterogeneity dominated by altitude gradients—nutrient content increases with decreasing altitude. Significant differences exist in nutrient content and distribution between the black and white clay layers, with the comprehensive fertility of the black layer being significantly higher than that of the white clay layer, particularly for TN, TP, TK, HN, and OM contents (effect size > 8). NDVI during the full maize growth period is significantly positively correlated with TP, TN, AK, AP, and HN, and the NDVI dynamics (first increasing. then decreasing) closely align with the peak periods of available nitrogen/phosphorus and crop growth cycles, indicating a strong coupling relationship between vegetation biomass accumulation and nutrient availability. These findings provide important references for guiding rational fertilization, agricultural production layout, and ecological environmental protection, contributing to the sustainable utilization of dryland albic soil resources and sustainable agricultural development. Full article

This paper examines the farming systems and operational structures in the Region of Western Macedonia (RWM), Greece and constructs a typology of farms based on structural, operational, and socio-economic characteristics. Agriculture remains a vital pillar of the regional economy, particularly in the context of RWM’s ongoing transition to a post-lignite development model. Using farm-level data from the 2018 Farm Accountancy Data Network (FADN), Principal Component Analysis (PCA) identified four latent dimensions of farm heterogeneity—income and productivity, asset base, land size, and labour structure. Hierarchical and K-means cluster analysis revealed three distinct farm types: (1) medium-sized, high-efficiency farms with moderate reliance on subsidies (30% of the sample); (2) small-scale, family farms with modest productivity and limited capitalisation (48%); and (3) large, asset-rich farms exhibiting structural inefficiencies and lower output per hectare (22%). These findings highlight structural vulnerabilities, particularly the predominance of undercapitalised smallholdings, and provide a data-driven foundation for Thdesigning differentiated policies that support farm resilience, generational renewal, and sustainable rural development. Full article

Accurate delineation of within-field management zones (MZs) is essential for implementing precision agriculture, particularly in spatially heterogeneous environments. This study evaluates the spatiotemporal consistency and practical value of MZs derived from three complementary data sources: electromagnetic conductivity (EM38-MK2), basic soil chemical properties (pH, humus, P₂O₅, K₂O, nitrogen), and vegetation/surface indices (NDVI, SAVI, LCI, BSI) derived from Sentinel-2 imagery. Using kriging, fuzzy k-means clustering, percentile-based classification, and Weighted Overlay Analysis (WOA), MZs were generated for a five-year period (2018–2022), with 2–8 zone classes. Stability and agreement were assessed using the Cohen Kappa, Jaccard, and Dice coefficients on systematic grid samples. Results showed that EM38-MK2 and humus-weighted BSP data produced the most consistent zones (Kappa > 0.90). Sentinel-2 indices demonstrated strong alignment with subsurface data (r > 0.85), offering a low-cost alternative in data-scarce settings. Optimal zoning was achieved with 3–4 classes, balancing spatial coherence and interpretability. These findings underscore the importance of multi-source data integration for robust and scalable MZ delineation and offer actionable guidelines for both data-rich and resource-limited farming systems. This approach promotes sustainable agriculture by improving input efficiency and allowing for targeted, site-specific field management. Full article

The construction and development of digital infrastructure have emerged as a crucial indicator of national competitiveness, which holds significant importance in driving the sustained growth of the national economy and the comprehensive advancement of society. This paper explores the impact of digital infrastructure on farm households’ scale management, aiming to reveal the role and potential of digital technology in agricultural modernization. Additionally, it seeks to offer a scientific foundation for the government to formulate agricultural policies and advance agricultural modernization. Using the OLS (Ordinary Least Squares) model, moderating effect model, and other methods, this study investigates how digital infrastructure affects farm households’ scale management based on micro-level research data of 2510 farm households from the CRRS (China Rural Revitalization Survey). The following conclusions are drawn: Firstly, the enhancement of digital infrastructure can motivate farm households to expand the land management area and increase the unit output of land. Secondly, farm households’ digital literacy positively moderates the effect of digital infrastructure on their land unit output; moreover, digital skills training for farm households exhibits a positive moderating effect on the influence of digital infrastructure on their management area. Finally, there is a heterogeneity in the impact of digital infrastructure on farm households’ scale management. Specifically, the promotion of farm households’ scale management is stronger in plain areas and weaker in hilly and mountainous areas; stronger for middle-aged and older and small-scale farm households; and weaker for youth groups and large-scale farm households. Based on this, this paper suggests increasing the investment in digital infrastructure construction, improving farm households’ digital literacy, carrying out digital skills training, and formulating differentiated regional policies for reference. Full article

The main purpose of this study is to understand the potential determinants of sustainable field crop farm productivity. This paper considers a multi-input, multi-output production technology to estimate the effects of aridity on farm-level productivity using a stochastic input distance function. By isolating the respective weather components of agricultural total factor productivity (TFP), we can better assess the impact on productivity of adopting various technologies and farm practices that might otherwise be masked by changing climate conditions or weather shocks. We make use of data from Phase 3 of the United States Department of Agriculture (USDA) Agricultural Resource Management Survey (ARMS) between 2006 and 2020. We supplement this estimation using field crop farm productivity determinants, including technology adoption and farm practice variables derived from the ARMS Phase 2 data. We identify several factors that affect farm productivity, including many practices that help farmers make more sustainable use of natural resources. The results show that adopting yield monitoring technology, fallowing in previous years, adding or improving tile drainage, and contour farming each improved farm productivity. In particular, during our study period, conservation tillage increased by over 300% across states on average. It is estimated to increase productivity level by approximately 3% for those adopting this practice. Critically, accounting for local weather effects increased the estimated productivity of nearly all farm practices and increased the statistical significance of several variables, indicating that other TFP studies that did not account for climate or weather effects may have underestimated the technical efficiency of farms that adopted these conservation practices. However, the results also show the impacts can be heterogeneous, with effects varying between farms located in the U.S. northern or southern regions. Full article

The spoilage of dairy products and foodborne diseases caused by Bacillus spp. are important public concerns. The objective of this study was to estimate the global prevalence of Bacillus spp. in a range of milk and dairy products by using a meta-analysis of literature data published between 2001 and 2023. A total of 3624 publications were collected from Web of Science and PubMed databases. Following the principles of systematic review, 417 sets of prevalence data were extracted from 142 eligible publications. Estimated by the random-effects model, the overall prevalence of Bacillus spp. in milk and dairy products was 11.8% (95% CI: 10.1–13.7%), with highly severe heterogeneity (94.8%). Subgroup analyses revealed substantial heterogeneity in Bacillus spp. prevalence according to geographical continents, sources of sampling, types of dairy products, microbial species, and detection methods. The prevalence of Bacillus spp. was highest in Asia (15.4%, 95% CI: 12.3–19.1%), lowest in Oceania (3.5%, 95% CI: 3.3–3.7%) and generally higher in developing versus developed countries. The prevalence of Bacillus spp. isolated from retail markets (16.1%, 95% CI: 13.0–19.7%) was higher than from farms (10.3%, 95% CI: 6.9–15.0%) or dairy plants (9.2%, 95% CI: 7.1–12.0%). This finding is likely attributable to its inherent characteristic of the resistant endospores and ubiquitous presence in the environment—Bacillus spp. can potentially cyclically contaminate farms, dairy products and human markets. Regarding the species distribution, Bacillus cereus presented a cosmopolitan distribution across all continents. The epidemic patterns of different Bacillus species vary depending on the sample sources. In addition, the detection method utilized also affected the reported prevalence of Bacillus spp. It is recommended to use molecular-based rapid detection methods to obtain a more accurate prevalence of Bacillus contamination. Therefore, a better understanding of variations in Bacillus spp. prevalence across different factors will enable competent authorities, industries, and other relevant stakeholders to tailor their interventions for effectively controlling Bacillus spp. in milk and dairy products. Full article

Maedi-visna virus (MVV), a small ruminant lentivirus causing chronic multisystemic disease in sheep, poses significant economic burdens due to reduced productivity and a lack of effective treatments. Despite its worldwide prevalence, epidemiological data from Algeria remain absent. This first national seroprevalence study aimed to elucidate MVV distribution, risk factors, and transmission dynamics in Algerian sheep herds. A cross-sectional survey of 1400 sheep across four regions (East, Center, West, South) was conducted, with sera analyzed via indirect ELISA (IDvet). Risk factors (geography, age, sex, breed, farming system) were evaluated using chi-square tests and Cramer’s V. Overall seroprevalence was 9.07% (95% CI: 7.57–10.57), with significant variation by sex (females: 20.44% vs. males: 3.68%; p < 0.05), age (1–5 years: 6.86% vs. <1 year: 0.29%; p = 0.01), and region (Central: 3.36% vs. Eastern: 0.86%; p < 0.05). Notably, no association was found with breed or farming system (p ≥ 0.08), contrasting prior studies and suggesting region-specific transmission dynamics. Females exhibited heightened seropositivity, implicating prolonged herd retention and vertical transmission risks. Geographic disparities highlighted industrialized farming in central Algeria as a potential transmission amplifier. Strikingly, seronegative animals in high-prevalence herds hinted at genetic resistance, warranting further investigation. This study provides foundational insights into MVV epidemiology in North Africa, underscoring the need for targeted surveillance, ewe-focused control measures, and genetic research to mitigate transmission. The absence of prior national data elevates its significance, offering actionable frameworks for resource-limited settings and enriching the global understanding of SRLV heterogeneity. Full article