Search Results (31)

This study presents an experimental investigation of the influence of dopant type and calcination temperature on BaTiO₃-based piezoceramics synthesized by a solid-state calcination process. The effects of Mn, Nb, La, and Ce dopants on the structural, morphological, and piezoelectric characteristics of powders calcined at 1000 °C and 1100 °C were systematically evaluated. In addition, two co-doped BaTiO₃ compositions, namely Mn–Nb and La–Nb, calcined at 1000 °C, were investigated in order to assess the combined effect of acceptor–donor and donor–donor doping strategies on microstructural evolution and structural stability. The synthesized powders were characterized by scanning electron microscopy (SEM), particle size analysis, energy-dispersive X-ray spectroscopy (EDS), elemental mapping, and X-ray diffraction (XRD), in comparison with a commercial BaTiO₃ reference powder. The piezoelectric response was assessed by correlating the structural modifications induced by doping with the estimated piezoelectric coefficient d₃₃, calculated as a function of the tetragonality ratio (c/a) and further correlated with the crystallite size. The results reveal significant variations in grain growth, dopant distribution, and crystallographic stability, highlighting the critical role of dopant chemistry and calcination temperature in tailoring the functional properties of BaTiO₃ for piezoelectric applications. Full article

Atopic dermatitis (AD) is a multifactorial skin disorder characterized by immune and barrier dysfunction. The gut–skin axis is a bidirectional pathway through which gut and skin influence each other via microbial metabolites. Bioactive metabolites produced by microbial transformation of phytochemicals show potential for AD prevention. This study developed a computational systems biology pipeline that prioritized gut-derived metabolites from Philippine medicinal plants by integrating metabolite prediction, pharmacokinetics, network analysis, and molecular simulations. From 2231 predicted metabolites, 31 satisfied pharmacological criteria and were mapped to 199 AD-associated targets, with ALB, CASP3, and PPARG identified as hub genes. Two metabolites, THPOC and PM38, exhibited complementary target affinities and strong binding stability. THPOC stabilized ALB and CASP3, supporting barrier integrity and apoptosis regulation, while PM38 strongly engaged PPARG, modulating lipid metabolism and anti-inflammatory transcription. They exhibited comparable or superior docking scores, stable MD interactions, and favorable binding free energies, compared to abrocitinib, an approved AD treatment. DFT analysis confirmed electronic stability and donor–acceptor properties linked to target selectivity. These findings highlight THPOC and PM38 as promising immunometabolic modulators acting on key AD-related pathways. Collectively, this study introduces a reproducible systems-based computational discovery framework, offering a novel preventive strategy for AD. Full article

Multifunctional self-healing supramolecular structural toughened resins, formulated to counteract the insulating properties of epoxy polymers and integrating auto-repair mechanisms, are morphologically and spectroscopically characterized using Tunneling Atomic Force Microscopy (TUNA) and Fourier transform infrared spectroscopy (FT-IR), respectively. Specifically, the multifunctional resin comprises self-healing molecular fillers and electrically conductive carbon nanotubes (CNTs) embedded in the matrix. The selected self-healing molecules can form non-covalent bonds with the hydroxyl (OH) and carbonyl (C=O) groups of the toughened epoxy matrix through their H-bonding donor and acceptor sites. An FT-IR analysis has been conducted to evaluate the interactions that the barbiturate acid derivatives, serving as self-healing fillers, can form with the constituent parts of the toughened epoxy blend. Tunneling Atomic Force Microscopy (TUNA) highlights the morphological characteristics of CNTs, their dispersion within the polymeric matrix, and their affinity for the globular rubber domains. The TUNA technique maps the samples’ electrical conductivity at micro- and nanoscale spatial domains. Detecting electrical currents reveals supramolecular networks, determined by hydrogen bonds, within the samples, showcasing the morphological features of the sample containing an embedded conductive nanofiller in the hosting matrix. Full article

Dicyanovinyl (DCV)-substituted oligothiophenes consist of both electron donor and acceptor ligands, which makes them promising materials for organic electronics. Here, we studied the structural and electronic properties of methyl-substituted dicyanovinyl-quinquethiophenes (DCV5T-Me₂) adsorbed on different metal surfaces, namely Au(111), Ag(111), and Cu(111), by using low-temperature scanning tunneling microscopy/spectroscopy (STM/STS). It is found that the assembled structures of DCV5T-Me₂ and the corresponding electronic properties vary depending on the underlying substrates. On Au(111) and Ag(111), compact organic islands are formed through intermolecular hydrogen bonding and electrostatic interactions. The lowest unoccupied molecular orbital (LUMO) and LUMO+1 of DCV5T-Me₂ are lower in energy on Ag(111) than those on Au(111), due to the stronger molecule–surface interaction when adsorbed on Ag(111). Moreover, orbital distributions of the LUMO and LUMO+1 in dI/dV maps on Au(111) and Ag(111) are the same as the DFT-calculated orbital distributions in gas phase, which indicates physisorption. In contrast, chemisorption dominates on Cu(111), where no ordered assemblies of DCV5T-Me₂ could be formed and resonances from the LUMO and LUMO+1 vanish. The present study highlights the key role of molecule–substrate interactions in determining the properties of organic nanostructures and provides valuable insights for designing next-generation organic electronics. Full article

Efficient and stable hole-transport material (HTM) is essential for enhancing the efficiency and stability of high-efficiency perovskite solar cells (PSCs). The commonly used HTMs such as spiro-OMeTAD need dopants to produce high efficiency, but those dopants degrade the perovskite film and cause instability. Therefore, the development of dopant-free N,N′-bicarbazole-based HTM is receiving huge attention for preparing stable, cost-effective, and efficient PSCs. Herein, we designed and proposed seven distinct small-molecule-based HTMs (B1–B7), which are synthesized and do not require dopants to fabricate efficient PSCs. To design this new series, we performed synergistic side-chain engineering on the synthetic reference molecule (B) by replacing two methylthio (–SCH3) terminal groups with a thiophene bridge and electron-withdrawing acceptor. The enhanced phase inversion geometry of the proposed molecules resulted in reduced energy gaps and better electrical, optical, and optoelectronic properties. Density functional theory (DFT) and time-dependent DFT simulations have been used to study the precise photo-physical and optoelectronic properties. We also looked into the effects of holes and electrons and the materials’ structural and photovoltaic properties, including light harvesting energy, frontier molecular orbital, transition density matrix, density of states, electron density matrix, and natural population analysis. Electron density difference maps identify the interfacial charge transfer from the donor to the acceptor through the bridge, and natural population analysis measures the amount of charge on each portion of the donor, bridge, and acceptor, which most effectively represents the role of the end-capped moieties in facilitating charge transfer. Among these designed molecules, the B6 molecule has the greatest absorbance (λ_max of 444.93 nm in dichloromethane solvent) and a substantially shorter optical band gap of 3.93 eV. Furthermore, the charge transfer analysis reveals superior charge transfer with improved intrinsic characteristics. Furthermore, according to the photovoltaic analysis, the designed (B1–B7) HTMs have the potential to provide better fill factor and open-circuit voltages, which will ultimately increase the power conversion efficiency (PCE) of PSCs. Therefore, we recommend these molecules for the next-generation PSCs. Full article

The pigments responsible for eggshell color and patterning in birds are protoporphyrin IX (PP) and biliverdin (BV). Both are involved in the catalytic degradation of the hemo group. Bilirubin (BR), another pigment, is produced when BV is broken down. PP, BV, and BR are free radical scavengers. In this study, we theoretically investigated the antioxidant capacities of these three biological meaningful molecules using Density Functional Theory calculations. First, two antioxidant mechanisms were analyzed for PP, BV, and BR: electron transfer and Hydrogen Atom Transfer. Second, since PP and BV interact with the calcium carbonate matrix of the eggshell, we analyzed the interaction of these pigments with Ca²⁺ and investigated their chelate compounds. Third, we explored the pro-oxidant properties of PP and BV, which have been proposed for PP when photoactivated to the triplet state, but not for BV. Our results show that PP, BV, and BR are just as good antiradical as other important natural pigments (carotenoids). Neither the antiradical properties of PP and BV nor the UV-visible spectra change due to the presence of calcium, suggesting that the signaling function of these pigments is not affected by the link with Ca²⁺. Finally, we found that both PP and BV (alone and when linked to Ca²⁺) can transfer energy from its triplet state to molecular-oxygen-producing singlet oxygen, indicating their pro-oxidant capacity. This investigation answers important questions about the function of these pigments, which may help to understand their influence on the reproductive success of birds. Full article

Hydrogen bonds (HB)s are the most abundant motifs in biological systems. They play a key role in determining protein–ligand binding affinity and selectivity. We designed two pharmaceutically beneficial HB databases, database A including ca. 12,000 protein–ligand complexes with ca. 22,000 HBs and their geometries, and database B including ca. 400 protein–ligand complexes with ca. 2200 HBs, their geometries, and bond strengths determined via our local vibrational mode analysis. We identified seven major HB patterns, which can be utilized as a de novo QSAR model to predict the binding affinity for a specific protein–ligand complex. Glycine was reported as the most abundant amino acid residue in both donor and acceptor profiles, and N–H⋯O was the most frequent HB type found in database A. HBs were preferred to be in the linear range, and linear HBs were identified as the strongest. HBs with HB angles in the range of 100–110°, typically forming intramolecular five-membered ring structures, showed good hydrophobic properties and membrane permeability. Utilizing database B, we found a generalized Badger’s relationship for more than 2200 protein–ligand HBs. In addition, the strength and occurrence maps between each amino acid residue and ligand functional groups open an attractive possibility for a novel drug-design approach and for determining drug selectivity and affinity, and they can also serve as an important tool for the hit-to-lead process. Full article

For many decades, uracil has been an antineoplastic agent used in combination with tegafur to treat various human cancers, including breast, prostate, and liver cancer. Therefore, it is necessary to explore the molecular features of uracil and its derivatives. Herein, the molecule’s 5-hydroxymethyluracil has been thoroughly characterized by NMR, UV–Vis, and FT-IR spectroscopy by means of experimental and theoretical analysis. Density functional theory (DFT) using the B3LYP method at 6-311++G(d,p) was computed to achieve the optimized geometric parameters of the molecule in the ground state. For further investigation and computation of the NLO, NBO, NHO analysis, and FMO, the improved geometrical parameters were utilized. The potential energy distribution was used to allocate the vibrational frequencies using the VEDA 4 program. The NBO study determined the relationship between the donor and acceptor. The molecule’s charge distribution and reactive regions were highlighted using the MEP and Fukui functions. Maps of the hole and electron density distribution in the excited state were generated using the TD-DFT method and PCM solvent model in order to reveal electronic characteristics. The energies and diagrams for the lowest unoccupied molecular orbital (LUMO) and the highest occupied molecular orbital (HOMO) were also provided. The HOMO–LUMO band gap estimated the charge transport within the molecule. When examining the intermolecular interactions in 5-HMU, Hirshfeld surface analysis was used, and fingerprint plots were also produced. The molecular docking investigation involved docking 5-HMU with six different protein receptors. Molecular dynamic simulation has given a better idea of the binding of the ligand with protein. Full article

Integrated wastewater treatment processes are needed due to the inefficient removal of emerging pharmaceuticals by single methods. Herein, an adsorbent-photocatalyst integrated material was fabricated by coupling calcium alginate with sulfur-doped TiO₂/tungsten disulfide (S-TiO₂/WS₂/alginate beads) for the removal of oxytetracycline (OTC) from aqueous solution by an integrated adsorption-photocatalysis process. The semiconductor S-TiO₂/WS₂ hybrid photocatalyst was synthesized with a hydrothermal method, while the integrated adsorbent-photocatalyst S-TiO₂/WS₂/alginate beads were synthesized by blending S-TiO₂/WS₂ with sodium alginate using calcium chloride as a precipitating agent. The physicochemical characteristics of S-TiO₂/WS₂/alginate beads were analyzed using X-ray diffraction , scanning electron microscopy, elemental mapping, X-ray photoelectron spectroscopy, and photoluminescence spectroscopy. The integrated adsorption-photocatalysis process showed enhanced removal from 92.5 to 72%, with a rise in the OTC concentration from 10 to 75 mg/L respectively. The results demonstrated that the adsorption of OTC onto S-TiO₂/WS₂/alginate beads followed the Elovich kinetic model and Redlich–Peterson isotherm models. The formations of H-bonds, cation bridge bonding, and n-π electron donor-acceptor forces were involved in the adsorption of OCT onto S-TiO₂/WS₂/alginate beads. In the integrated adsorption-photocatalysis, surface-adsorbed OTC molecules were readily decomposed by the photogenerated active radical species (h⁺, O₂^•−, and HO^•). The persulfate addition to the OTC solution further increased the photocatalysis efficacy due to the formation of additional oxidizing species (SO₄^•⁻, SO₄⁻). Moreover, S-TiO₂/WS₂/alginate beads showed favorable efficiency and sustainability in OTC removal, approaching 78.6% after five cycles. This integrated adsorption-photocatalysis process offered significant insight into improving efficiency and reusability in water treatment. Full article

The neuronal nicotinic acetylcholine receptors (nAChRs) belong to the ligand-gated ion channel (GLIC) group, presenting a crucial role in several biological processes and neuronal disorders. The α4β2 and α7 nAChRs are the most abundant in the central nervous system (CNS), being involved in challenging diseases such as epilepsy, Alzheimer’s disease, schizophrenia, and anxiety disorder, as well as alcohol and nicotine dependencies. In addition, in silico-based strategies may contribute to revealing new insights into drug design and virtual screening to find new drug candidates to treat CNS disorders. In this context, the pharmacophore maps were constructed and validated for the orthosteric sites of α4β2 and α7 nAChRs, through a docking-based Comparative Intermolecular Contacts Analysis (dbCICA). In this sense, bioactive ligands were retrieved from the literature for each receptor. A molecular docking protocol was developed for all ligands in both receptors by using GOLD software, considering GoldScore, ChemScore, ASP, and ChemPLP scoring functions. Output GOLD results were post-processed through dbCICA to identify critical contacts involved in protein-ligand interactions. Moreover, Crossminer software was used to construct a pharmacophoric map based on the most well-behaved ligands and negative contacts from the dbCICA model for each receptor. Both pharmacophore maps were validated by using a ROC curve. The results revealed important features for the ligands, such as the presence of hydrophobic regions, a planar ring, and hydrogen bond donor and acceptor atoms for α4β2. Parallelly, a non-planar ring region was identified for α7. These results can enable fragment-based drug design (FBDD) strategies, such as fragment growing, linking, and merging, allowing an increase in the activity of known fragments. Thus, our results can contribute to a further understanding of structural subunits presenting the potential for key ligand-receptor interactions, favoring the search in molecular databases and the design of novel ligands. Full article

The families of organic charge-transfer salts $\kappa$-(BEDT-TTF)${}_{2}X$ and $\kappa$-(BETS)${}_{2}X$, where BEDT-TTF and BETS stand for the organic donor molecules C${}_{10}$H${}_8$S${}_8$ and C${}_{10}$H${}_8$S${}_4$Se${}_4$, respectively, and X for an inorganic electron acceptor, have been proven to serve as a powerful playground for the investigation of the physics of frustrated Mott insulators. These materials have been ascribed a model character, since the dimerization of the organic molecules allows to map these materials onto a single band Hubbard model, in which the dimers reside on an anisotropic triangular lattice. By changing the inorganic unit X or applying physical pressure, the correlation strength and anisotropy of the triangular lattice can be varied. This has led to the discovery of a variety of exotic phenomena, including quantum-spin liquid states, a plethora of long-range magnetic orders in proximity to a Mott metal-insulator transition, and unconventional superconductivity. While many of these phenomena can be described within this effective one-band Hubbard model on a triangular lattice, it has become evident in recent years that this simplified description is insufficient to capture all observed magnetic and electronic properties. The ingredients for generalized models that are relevant include, but are not limited to, spin-orbit coupling, intra-dimer charge and spin degrees of freedom, electron-lattice coupling, as well as disorder effects. Here, we review selected theoretical and experimental discoveries that clearly demonstrate the relevance thereof. At the same time, we outline that these aspects are not only relevant to this class of organic charge-transfer salts, but are also receiving increasing attention in other classes of inorganic strongly correlated electron systems. This reinforces the model character that the $\kappa$-phase organic charge-transfer salts have for understanding and discovering novel phenomena in strongly correlated electron systems from a theoretical and experimental point of view. Full article

Flavonoids are a secondary metabolite group with various bioactivities, such as antioxidants. They are rich in the genus Erythrina, such as Erythrina crista-galli. This research aims to isolate and characterize flavonoids from the twigs of E. crista-galli and determine their antioxidant properties through in silico and in vitro assays. The ethyl acetate extract of E. crista-galli twigs were separated by column chromatography and characterized using spectroscopic methods. Density functional theory (DFT) calculations were performed on the isolated flavonoids and the reference compounds (ascorbic acid and quercetin) to obtain global descriptive parameters and a donor–acceptor map (DAM). We successfully isolated lupinifolin (1) and citflavanone (2) for the first time from E. crista-galli, along with lonchocarpol A (3), which has been discovered previously. The DAM suggests that these flavanones are good antiradicals with effective electron donors. However, they tend to be electron acceptors in methanol. The frontier molecular orbital analysis implies that lupinifolin (1) is a better antiradical than the other flavanones. The DPPH assays show that lupinifolin (1) has the highest antioxidant (antiradical) activity, with an IC₅₀ value of 128.64 ppm. The in silico studies showed similar trends to the in vitro assays using the DPPH method. Full article

Owing to several mutations, the oncogene Kirsten rat sarcoma 2 viral oncogene homolog (KRAS) is activated in the majority of cancers, and targeting it has been pharmacologically challenging. In this study, using an in silico approach comprised of pharmacophore modeling, molecular docking, and molecular dynamics simulations, potential KRAS G12D inhibitors were investigated. A ligand-based common feature pharmacophore model was generated to identify the framework necessary for effective KRAS inhibition. The chemical features in the selected pharmacophore model comprised two hydrogen bond donors, one hydrogen bond acceptor, two aromatic rings and one hydrophobic feature. This model was used for screening in excess of 214,000 compounds from InterBioScreen (IBS) and ZINC databases. Eighteen compounds from the IBS and ten from the ZINC database mapped onto the pharmacophore model and were subjected to molecular docking. Molecular docking results highlighted a higher affinity of four hit compounds towards KRAS G12D in comparison to the reference inhibitor, BI-2852. Sequential molecular dynamics (MD) simulation studies revealed all four hit compounds them possess higher KRAS G12D binding free energy and demonstrate stable polar interaction with key residues. Further, Principal Component Analysis (PCA) analysis of the hit compounds in complex with KRAS G12D also indicated stability. Overall, the research undertaken provides strong support for further in vitro testing of these newly identified KRAS G12D inhibitors, particularly Hit1 and Hit2. Full article

Heterocyclic compounds, including pyrimidine derivatives, exhibit a broad variety of biological and pharmacological activities. In this paper, a previously synthesized novel pyrimidine molecule is proposed, and its pharmaceutical properties are investigated. Computational techniques such as the density functional theory, ADMET evaluation, and molecular docking were applied to elucidate the chemical nature, drug likeness and antibacterial function of molecule. The viewpoint of quantum chemical computations revealed that the molecule was relatively stable and has a high electrophilic nature. The contour maps of HOMO-LUMO and molecular electrostatic potential were analyzed to illustrate the charge density distributions that could be associated with the biological activity. Natural bond orbital (NBO) analysis revealed details about the interaction between donor and acceptor within the bond. Drug likeness and ADMET analysis showed that the molecule possesses the agents of safety and the effective combination therapy as pharmaceutical drug. The antimicrobial activity was investigated using molecular docking. The investigated molecule demonstrated a high affinity for binding within the active sites of antibacterial and antimalarial proteins. The high affinity of the antibacterial protein was proved by its low binding energy (−7.97 kcal/mol) and a low inhibition constant value (1.43 µM). The formation of four conventional hydrogen bonds in ligand–protein interactions confirmed the high stability of the resulting complexes. When compared to known standard drugs, the studied molecule displayed a remarkable antimalarial activity, as indicated by higher binding affinity (B.E. −5.86 kcal/mol & Ki = 50.23 M). The pre-selected molecule could be presented as a promising drug candidate for the development of novel antimicrobial agents. Full article

Laser-induced forward transfer for high-viscosity—of Pa·s—pastes differ from standard LIFT processes in its dynamics. In most techniques, the transference after setting a great gap does not modify the shape acquired by the fluid, so it stretches until it breaks into droplets. In contrast, there is no transferred material when the gap is bigger than three times the paste thickness in LIFT for high-viscosity pastes, and only a spray is observed on the acceptor using this configuration. In this work, the dynamics of the paste have been studied using a finite-element model in COMSOL Multiphysics, and the behavior of the paste varying the gap between the donor and the acceptor substrates has also been modeled. The paste bursts for great gaps, but it is confined when the acceptor is placed close enough. The obtained simulations have been compared with a previous work, in which the paste structures were photographed. The analysis of the simulations in terms of speed allows for predicting the burst of the paste—spray regime—and the construction of a printability map regarding the gap between the substrates. Full article