Search Results (223)

Springs are unique ecosystems found in lowland areas. In urban environments, these springs often have niches that are heavily transformed by human activity. In this study, we identified and compared the taxonomic diversity of diatom communities across various microhabitats—epilithon, epipelon, epipsammon, epibryon, and epixylon—within altered lowland urban springs. Our results revealed differences in diatom communities among the microhabitats, with the highest species richness observed in the epibryon. Notably, the presence of extremely rare species such as Amphora eximia, Caloneis aerophila, and Stauroneis muriella suggest that, even under urban conditions, springs continue to serve a refugial function for diatom diversity. These findings underscore the important role of urban springs in maintaining diatom diversity despite high anthropogenic pressure. We also assessed the ecological status of the springs using the Polish Multimetric Diatom Index (IO), which incorporates indicators of trophy, saprobity, and the abundance of reference species. All studied springs were classified as having very good ecological status. Full article

This study aimed to analyse the spatiotemporal evolution of phytoplankton community dynamics and its underlying mechanisms in the Liaoning section of the Liao River Basin in 2010, 2015, and 2020. Phytoplankton species diversity increased significantly, with an increase from three phyla and 31 species in 2010 to six phyla and 74 species in 2020. Concurrent increases in α-diversity indicated continuous improvements in habitat heterogeneity. The community structure shifted from a diatom-dominated assemblage to a green algae–diatom co-dominated configuration, contributing to an enhanced water purification capacity. The upstream agricultural zone (Tieling section) had elevated biomass and low diversity, indicating persistent non-point-source pollution stress. The midstream urban–industrial zone (Shenyang–Anshan section) emerged as a phytoplankton diversity hotspot, likely due to expanding niche availability in response to point-source pollution control. The downstream wetland zone (Panjin section) exhibited significant biomass decline and delayed diversity recovery, shaped by the dual pressures of resource competition and habitat filtering. The driving mechanism of community succession shifted from nutrient-dominated factors (NH₃-N, TN) to redox-sensitive factors (DO, pH). These findings support a ‘zoned–graded–staged’ ecological restoration strategy for the Liao River Basin and inform the use of phytoplankton as bioindicators in watershed monitoring networks. Full article

Diatoms are the most numerous of algae and scanning electron microscopy continues to reveal ever-increasing diversity. Two new species of Hyalosira from Florida add new characters distinguishing species in this recently redefined genus: H. ornata sp. nov. from Florida Bay has consistent and elaborate ornamentation on both valves and undulate valve margins; H. sertifera sp. nov., from the Atlantic coast of Key Largo, has a thick, consistent, garland-like ring of cristae on only one valve; the former species has deep septa on all copulae except the valvocopula, the latter shallow septa or none on the copulae. Hyalosira hesperia was also found in the Atlantic sample; this is the first record outside the Mediterranean. The number of species known from SEM is now twelve, including four with septa, a diversity potentially useful in exploring outstanding questions of septum function; a key to these species is appended. Full article

With rapid economic and social development, eutrophication in coastal areas is currently one of the most severe environmental problems worldwide. However, our understanding of the response of the phytoplankton community structure to the intensification of coastal eutrophication is still relatively limited. Here, seasonal phytoplankton, environmental factors, and nutrients were investigated in 2009 and 2019 in Zhanjiang Bay, where eutrophication has intensified in recent years, to analyze the variation in nutrient structure and its impact on the phytoplankton community. The results revealed that the DIP and DSI concentrations in 2019 were higher than those in 2009. However, dissolved inorganic nitrogen (DIN) has decreased substantially over the past several decades, which is due mainly to the decrease in anthropogenic nitrogen emissions, the substantial increase in the intrusion of high-salinity seawater, and the high-phosphorus wastewater discharged from urban industries. This resulted in a decrease in phytoplankton cell abundance, phytoplankton composition, and species diversity (H′) in 2019 compared with 2009. In addition, the superior N transport, storage, and response strategy to a low N supply of diatoms, especially Skeletonema and Chaetoceros, might benefit the growth of diatoms under low DIN conditions. The lower DIN/DIP ratio in 2019 favored the growth of diatoms, especially Skeletonema and Chaetoceros, leading diatoms to dominate the phytoplankton assemblage. This study demonstrates how changes in nutrient structure alter the community structure of phytoplankton, providing new insights into deepening our understanding of eco-environmental evolution. Full article

The ecological assessment of rivers under the Water Framework Directive (WFD) requires the use of biological quality elements (BQEs) across defined abiotic types of rivers. However, limited evidence exists on how well biological indices perform across multiple typological classes, particularly under the influence of complex, overlapping stressors. This study evaluated the diagnostic performance of four biological indices (IO—diatoms, MIR—macrophytes, MMI_PL—benthic macroinvertebrates, and EFI + PL—fish) in 16 river sites in southern Poland. These were classified into four abiotic types (5, 6, 12, and 17) and subjected to varying levels of human pressure. Biological, physical and chemical, and hydromorphological data were collected along environmental gradients including conductivity, nutrient enrichment, and habitat modification. Statistical analyses were used to evaluate patterns in community composition and index responsiveness. The IO and MMI_PL indices were the most consistent and sensitive in distinguishing between reference and degraded river conditions. MIR and EFI + PL were more variable, especially in lowland rivers, and showed stronger associations with habitat structure and oxygen levels. Conductivity emerged as a key driver of biological responses across all BQEs, with clear taxonomical shifts observed. The results support the need to consider both typological context and local environmental variation in ecological classification. The findings underscore the need for typology-aware, pressure-specific biomonitoring strategies that combine multiple organism groups and integrate continuous environmental variables. Such approaches can enhance the ecological realism and diagnostic accuracy of river assessment systems, supporting more effective water resource management across diverse hydroecological contexts. Full article

Mangrove forests are vital ecosystems along tropical coasts, playing crucial roles in water purification and biodiversity conservation. Diatoms, as sensitive ecological indicators, were employed in this study to evaluate the health of the mangrove forests along the Sanya River. The research involved analyzing the community structure of planktonic diatoms and water physicochemical properties during spring and winter, as well as carrying out a comprehensive assessment of the ecological health of the region in terms of four seasonal–spatial–environmental–biological indices. A total of 22 genera of planktonic diatoms were identified. In winter, Melosira sp. (34.94%), Skeletonema sp. (25.50%), and Chaetoceros sp. (15%) were dominant, with relative abundances of 34.94%, 25.50%, and 15.00%. In spring, Melosira sp. became the absolutely dominant species, averaging 70.16%. Diatom cell abundance shows both significant seasonal and spatial variation. In winter, it ranged from 0.53 to 17.4 × 10⁹ cells-L⁻¹, peaking in the midstream region, whereas in spring, it ranged from 2.48 to 21.0 × 10⁹ cells-L⁻¹, peaking at the mouth of the estuary. A higher abundance of diatoms in spring strengthens primary productivity and supports the subsequent functioning of the food chain. Diatom indices (Shannon–Wiener index H’, Pielou evenness index J, and Margalef richness index D) indicated an intermediate ecological health level for the Sanya River mangrove forests. Diversity was higher in winter than in spring, with the lowest values recorded in the midstream region. Redundancy analysis (RDA) indicated that T, pH, and PO₄³⁻ were the primary environmental drivers of diatom community succession. In spring, pH was positively correlated with T and PO₄³⁻, respectively. They drove the succession of diatom communities from diverse assemblages in winter to a single dominant species. Full article

An oceanographic cruise with 34 stations was conducted in the central-southwestern region of the Gulf of Mexico from February 19 to 10 March 2013. This study included the measurement of hydrographic and phytoplankton bio-optical parameters, and pigment samples were collected at two depth levels (10 and 50 m). Our results showed a warm and nutrient-depleted water column associated with low chlorophyll a (<1 mg Chla m⁻³) and average values of a_ph440 (0.01 ± 0.008, m⁻¹) and a_d350 (0.04 ± 0.02, m⁻¹). In addition, nano-microphytoplankton abundance and pigments were analyzed using a light microscope and HPLC, respectively. Overall, the Gulf of Mexico exhibited oligotrophic characteristics, with Chla (0.17 ± 0.11 mg m⁻³) and NO₃⁻ (0.03 ± 0.001 µM), except at 50 m depth in some stations north of Yucatán and in Campeche Bay and at surface level off the Tamaulipas shelf. In these three regions, values of a_ph(440), a_d(350), (Chla) and phytoplankton abundance (>12 × 10³ cells L⁻¹) were observed near river mouths and under seasonal oceanographic forcings, which increased the growth and diversity of phytoplankton. The most relevant pigments found were DVchla (0.06 ± 0.13 mg m⁻³), Chlb (0.16 ± 0.21 mg m⁻³), Zea (0.06 ± 0.03 mg m⁻³), and Hex-fuco (0.02 ± 0.02 mg m⁻³); these are associated with the presence of Prochlorococcus, chlorophytes, Synechococcus, prymnesiophytes, and diatoms. Through the bio-optical variability, we determined the ecological geography of phytoplankton in four different spectral shapes, where M1 and M2 represent the group of cyanobacteria (Prochlorococcus and Synechococcus) and M3 and M4 represent a mixture of diatoms, dinoflagellates, and chlorophytes. In conclusion, we consider that oceanographic processes such as cyclonic and anticyclonic structures and permanent rivers determine the favorable changes in phytoplankton (>nutrients, Chla, a_ph440) and an increment in the number of phytoplankton spectral shapes). Full article

Benthic diatoms are key primary producers in aquatic ecosystems and sensitive bioindicators for water quality monitoring; for example, the Yellow River Basin exhibits high diatom species diversity. However, traditional microscopic identification of such species remains inefficient and inaccurate. To enable automated identification, we established a benthic diatom dataset containing 3157 SEM images of 32 genera/species from the Yellow River Basin and developed a novel identification method. Specifically, the knowledge extraction module distinguishes foreground features from background noise by guiding spatial attention to focus on mutually exclusive regions within the image. This mechanism allows the network to focus more on foreground features that are useful for the classification task while significantly reducing the interference of background noise. Furthermore, a dual knowledge guidance module is designed to enhance the discriminative representation of fine-grained diatom images. This module strengthens multi-region foreground features through grouped channel attention, supplemented with contextual information through convolution-refined background features assigned low weights. Finally, the proposed method integrates multi-granularity learning, knowledge distillation, and multi-scale training strategies, further improving the classification accuracy. The experimental results demonstrate that the proposed network outperforms comparative methods on both the self-built diatom dataset and a public diatom dataset. Ablation studies and visualization further validate the efficacy of each module. Full article

Phytoplankton are single-celled microorganisms with short generation times that may comprise high diversity in genetic and phenotypic traits, allowing them to acclimate to changes rapidly. High intraspecific genetic variation is well known in phytoplankton, but less is known about variation in physiological traits. To investigate variability and plasticity in genetic, morphological, and physiological traits of the toxigenic diatom genus Pseudo-nitzschia in a global warming scenario, we exposed 40 strains of the cold-water P. seriata to different temperatures (2 °C, 6 °C and 10 °C). The maximum growth rate and cellular toxin content showed extensive intraspecific variation, whereas morphological and genetic variation was minor. Thermal reaction norms showed a general increase in growth rate with increasing temperature; however, three distinct types of thermal responses were found among the 40 strains. All 40 strains contained toxins (domoic acid) in both exponential and stationary growth phase, and toxin content increased significantly with temperature. Most strains (>87%) contained measurable levels of domoic acid at all three temperatures. In conclusion, P. seriata shows extensive intraspecific variation in measured physiological traits like growth and toxin content, a variation exceeding the response of each strain to increases in temperature. Intraspecific variation in harmful species thus needs attention for the future understanding of food web dynamics, as well as the management and forecasting of harmful blooms. Full article

Mastogloia is a large, morphologically diverse genus of primarily benthic marine species defined by the presence of partecta (chambers) on the valvocopula (girdle band next to the valve). Several genera have been found with valves that resemble Mastogloia but lack the ring of partecta; the most diverse group is in freshwaters, especially Aneumastus, but there are two marine genera, both monotypic. A third such species has been found in Cuba and is described here as Paramastogloia cubana gen. nov., sp. nov. Paramastogloia cubana, Mastoneis biformis, and Mastogloiopsis biseriata each resemble the valve structure of some species of Mastogloia but do not resemble one another. Paramastogloia is indistinguishable in light microscopy (LM) from naviculoid diatoms and had been identified as Navicula cf. sovereigniae. The resemblance of P. cubana to Mastogloia is in the areolae, particularly to those of M. umbra, M. dicephala, and M. mammosa, three species not likely to be in one monophyletic group. Mastoneis has been observed in LM from widespread warm-water localities and resembles some Mastogloia in having costae extending partway across the virgae (interstriae); new ultrastructural details are presented showing the girdle bands and absence of partecta, and a clearer genus diagnosis is proposed. The third genus, Mastogloiopsis, was established with ultrastructure and resembles species of Mastogloia sec. Marginulatae. The range of areolar characters that might be admissible to Paramastogloia is unknown, so the generic diagnosis has been left imprecise to allow for the possibility of other species. The relationships among these genera await genetic studies, which are still scarce in Mastogloiaceae. Full article

Background/Objectives: Taxonomic profiling of soil microbial communities is useful for assessing and monitoring the biological status of agricultural land. In this study, we aimed to investigate changes in the taxonomic structure of soil organisms in minimally managed agricultural fields. Methods: We used DNA metabarcoding to investigate both terrestrial prokaryotes and eukaryotes in cabbage-cultivated and uncultivated sites in a minimally managed agricultural field in central Japan from February to August 2021. Analyses of the relative abundances of prokaryotic and eukaryotic sequence variants (SVs) and their β-diversities, and the subsequent redundancy analysis (RDA) clarified the dynamic changes in eukaryotic communities during cultivation. We further investigated taxonomic changes in fungi-, protist-, and animal-derived SVs, abundant SVs in each eukaryotic phylum, as well as the co-occurrence networks of the top 150 SVs. Results: The results revealed that the fractions of predatory or parasitic protists and animals increased, whereas those of fungi and earthworm Enchytraeus spp. decreased. The fractions of abundant SVs derived from diatoms, Ciliophora, the class Vampyrellidae (Cercozoa), and mites increased and subsequently decreased during this period. These findings suggest that predatory protists and animals fed on bacteria and autotrophic eukaryotes (such as diatoms) propagated in spring, followed by their propagation and parasitism to host eukaryotes. The networks also changed, especially prokaryotic networks that markedly changed from April to May, and those of eukaryotes from May to June–August, supporting the observations mentioned above. Conclusions: These findings indicate the dynamic and sequential changes in soil communities in fields with minimal agricultural practices and could be useful for sustainable natural farming. Full article

Mariculture is currently experiencing rapid growth in response to the rising global food demand, while simultaneously posing significant challenges to environmental issues, such as pollution stress and ecological degradation. To achieve a balance between ecosystem maintenance and seafood supply, marine ranching has flourished as a sustainable approach through the implementation of artificial reef construction, stock enhancement, and strategic releasing. However, few studies have evaluated the ecological impacts through a comparison of in situ survey data across geographical areas. Phytoplankton are vital organisms in marine ecosystems that function as essential indicators of seawater quality and biological diversity, reflecting environmental health and ecological sustainability. In this study, we investigated the species diversity, community structure, and co-occurrence network of phytoplankton based on 175 samples collected from 75 sites encompassing all 26 marine ranching seawater areas, along with their corresponding surrounding areas in Yantai’s coastal sea. A total of 112 species were identified across three phyla of diatoms, dinoflagellates, and chrysophytes; among them, diatoms dominated the community with a notably high proportion of 98.83%. Their diversity and structure exhibited significant variations across different seasons and geographic locations. Moreover, no preference was observed between the marine ranching seawater and the surrounding areas. Nevertheless, a co-occurrence network analysis demonstrated that lower values for average degree, clustering coefficient, and average path length were exhibited in marine ranching, indicating that aquaculture activities have reduced connectivity among potential interactions. Additionally, it showed reduced stability as indicated by the remaining nodes and the natural connectivity indices, regardless of the proportion of nodes removed. These findings illustrate that while marine ranching processes can mitigate species losses with maintaining phytoplankton community structure, they still alter association among species and reduce overall stability. This research recommends that scientifically informed expansion of marine ranching necessitates robust environmental monitoring datasets and systematic validation to ensure holistic sustainability. Full article

This study reports two novel species, Gogorevia contracta sp. nov. and G. recticentralis sp. nov., which were isolated from freshwater environments in South Korea. Using an integrative taxonomic approach, we conducted morphological analyses using light microscopy and scanning electron microscopy, along with molecular phylogenetic investigations using SSU rRNA and rbcL gene sequences. Phylogenetic reconstructions highlighted the distinct characteristics of both species, confirming their classification within the genus Gogorevia and elucidating their evolutionary relationships. Morphologically, G. contracta was characterized by a bow-tie-shaped central area and circular depressions in the rapheless valve, whereas G. recticentralis exhibited a rectangular-to-wedge-shaped central area with parallel striae near the center of the raphe valve. Our findings highlighted the ecological significance of Gogorevia species and suggested their potential role as bioindicators of water quality in relatively unpolluted freshwater systems. Over the past decade, our research has focused on the taxonomic and ecological study of diatoms in the Han River system and identified 136 species, including nine newly described taxa. The findings of the present study contribute to a growing understanding of Gogorevia diversity, underscore the importance of region-specific diatom indices, and support the integration of morphological and molecular methods into diatom systematics. Full article

Microalgae are microscopic unicellular organisms that inhabit marine, freshwater, and moist terrestrial ecosystems. The vast number and diversity of microalgal species provide a significant reservoir of biologically active compounds, highly promising for biomedical applications. Diatoms are unicellular eukaryotic algae belonging to the class Bacillariophyceae. They possess intricately structured silica-based cell walls, which contain long-chain polyamines that play important roles in the formation of silica. Long-chain polyamines are uncommon polyamines found only in organisms that produce biosilica. Diatomite, which is a marine sediment of the remains of the silica skeleton of diatoms, could be an abundant source of biogenic silica that can easily be converted to silica particles. This concise review focuses on the biofabrication of polyamine-based nanosilica from diatoms and highlights the possibility of utilizing diatom biosilica as a nanocarrier for drug and siRNA delivery, bioimaging, and bone tissue engineering. The challenges that may affect diatom production, including environmental stresses and climate change, are discussed together with the prospect of increasing diatom-based biosilica production with the desired nanostructures via genetic manipulation. Full article

A total of 18 Humidophila strains isolated from soil samples from Cát Tiên National Park have been studied. Based on morphometric analysis and molecular data for the V4 18S rDNA and rbcL regions, we proposed the presence of four new species: H. vietnamica, H. paravietnamica, H. cattiensis, and H. concava. This is the first study that provides molecular data for such a large number of Humidophila strains. Furthermore, we encountered some Humidophila strains with clear morphological differences (which we assigned to several morphotypes) that cannot be separated using the selected genetic markers and cannot be attributed to phenotypic variations in one species; these require further study of their genetic structure. We also observed the opposite case, where in the absence of morphological differences, clear genetic differentiation is shown, which demonstrates the presence of cryptic taxa in our sample. The maximum differences for these strains were observed in the V4 18S rDNA region. Our results show that the effectiveness of commonly used genetic markers V4 18S rDNA and rbcL for separating species can vary greatly. Our study highlights the need to research different genetic markers and their use for proper species separation, as well as the genetic diversity of diatoms, and the need for further studies of intra- and interspecific genetic distances. Full article