Search Results (20)

Cave environments represent extreme and underexplored ecosystems wherein fungi play a crucial role in nutrient cycling and ecological dynamics. This study provides the first comprehensive assessment of fungal diversity in air samples from caves across Portugal, with six samples from five locations being assessed through culture-dependent and metabarcoding approaches. From the five bat roosts studied, eleven morphologically distinct fungal colonies were isolated, with genera such as Aspergillus, Penicillium, and Chaetomium identified. Concurrently, Oxford Nanopore sequencing of the internal transcribed spacer (ITS) region of fungal rDNA revealed 286 genera, with Aspergillus, Candida, and Calyptella dominating across the sites. Diversity indices and community composition analyses, including Principal Coordinate Analysis (PCoA) and hierarchical clustering, highlighted distinct fungal profiles influenced by site-specific environmental factors and human activity. The data underscores the dual role of fungi in bat roosts as essential decomposers, emphasizing their adaptability to oligotrophic conditions. These findings advance our understanding of subterranean fungal ecology and emphasize the need for targeted conservation efforts to protect cave ecosystems from anthropogenic impacts. Full article

Rabies, a fatal zoonotic disease, affects humans, domestic animals, and wildlife predominantly in Africa, Asia, and Latin America. In Malawi, rabies virus (RABV) is primarily transmitted by infected dogs, impacting humans and cattle. Lyssavirus has also been documented in insectivorous bats. A community survey near bat roosts assessed knowledge, attitudes, and practices regarding bat-borne zoonoses. Bat samples were tested for lyssavirus using RT-PCR, and RABV genomes from humans and domestic animals were sequenced and analysed phylogenetically. The survey revealed that 50% of participants consumed bat meat, and 47% reported bats entering their homes. Reduced bat presence indoors significantly lowered contact risk (aOR: 0.075, p = 0.021). All 23 bat samples tested negative for lyssavirus. Malawian RABV genomes, 11,801 nucleotides long, belonged to the Africa 1b lineage, showing >95% similarity with GenBank sequences. Phylogenetic analysis indicated close clustering with strains from Tanzania, Zimbabwe, and South Africa. Human and cattle strains shared 99% and 92% amino acid similarity with dog strains, respectively, with conserved critical sites and unique substitutions across all five RABV genes. Frequent human–bat interactions pose zoonotic risks. While no lyssavirus was detected in bats, ongoing surveillance is crucial. This first comprehensive genome analysis of Malawian RABVs highlights their regional transmission and signifies the need for regional collaboration in rabies control, community education, and further study of genetic adaptations. Full article

Bats are recognized as reservoirs for diverse paramyxoviruses, some of which are closely related to known human pathogens or directly implicated in zoonotic transmission. The emergence of the zoonotic Sosuga virus (SOSV) from Egyptian rousette bats (ERBs), which caused an acute febrile illness in a reported human case in Africa, has increased the focus on the zoonotic potential of the Rubulavirinae subfamily. Previous studies identified human parainfluenza virus 2 (HPIV2)- and mumps (MuV)-related viruses in ERBs from South Africa, with HPIV2-related viruses restricted to gastrointestinal samples, an underexplored target for rubulavirus biosurveillance, suggesting that sample-type bias may have led to their oversight. To address this, we performed a longitudinal analysis of population-level fecal samples from an ERB maternity roost for rubulavirus RNA, employing a broadly reactive hemi-nested RT-PCR assay targeting the polymerase gene. We detected HPIV2- and MuV-related viruses in addition to numerous pararubulaviruses, highlighting significant viral diversity. Temporal analysis of three major clades revealed peaks in rubulavirus shedding that correlated with seasonal environmental changes and host reproductive cycles, although shedding patterns varied between clades. These findings identify specific periods of increased risk for the spillover of bat-associated rubulaviruses to humans, providing critical information for developing targeted mitigation strategies to minimize zoonotic transmission risk within the local community. Full article

Coastal wetlands deliver essential ecosystem services, including cultural services, which provide non-material benefits such as recreation, education, and spiritual enrichment that are crucial for human well-being. This study investigates the cultural ecosystem services provided by a 40 ha coastal wetland in the Gulf of Manfredonia, southern Italy, within the Gargano National Park. By integrating an ecological survey of the bird community with a social survey of visitors to the King’s Lagoon Nature Reserve, the content of tailored planning strategies and management tools for the conservation of wetland biodiversity was developed. An ecological analysis of the bird community was carried out on the assumption that it could be representative of the total biodiversity observed in the wetland. On the other hand, a questionnaire was used to collect information from visitors to the reserve, highlighting the aspects of the wetland that they found most interesting and attractive according to their judgement and beliefs, and thus targeting a specific set of cultural ecological services. The two approaches were then combined to develop a comprehensive strategy. The bird community analysis led to the identification of the mixed biotope category (a combination of wetlands, aquatic/riparian ecosystems, semi-natural vegetated areas, and meadows together with agricultural areas) as the reference biotope for prioritizing wetland management. The Ardeidae family was chosen as a bird flagship group because of its high visibility, ease of identification, attractiveness to visitors, wide local distribution, and fairly constant presence in the study area throughout the year. Flagship species have a dual function: to guide conservation measures and actions by wetland managers, and to attract the interest, curiosity and active participation of potential visitors to the wetland. Based on the results, a list of guidelines for improving the birds’ habitats and providing them with resources (feeding, breeding, shelter, roosting, etc.) has been proposed. The aim of these measures is to optimize the presence and abundance of Ardeidae as flagship species, thereby preserving the biodiversity heritage in general and increasing the provision of cultural ecosystem services in the wetland. The resulting dynamic interplay ensures that both natural and cultural resources are fully and appropriately valued, protected, and maintained for the benefit of present and future generations. Full article

Background: Environmental changes impact bat–human interactions, heightening concerns of pathogen spillover and highlighting the need to understand human–bat interactions in the context of ecosystems. The objective of this study was to assess factors associated with human contact with bats in communities living near bat roosts in Northern Tanzania. Methods: A cross-sectional survey was used to investigate the factors associated with human contact with bats. Utilizing a standardized questionnaire administered through face-to-face interviews, relevant data were collected from respondents living in or near regions characterized by high bat density. Descriptive analyses followed by bivariate and multivariate analyses were performed to assess the association between the investigated factors and the outcome variable of interest, contact with bats. Results: Data were collected from 325 respondents. Of the respondents, 57.5% (187/325) reported bat contact, and only 4% believed bats can transmit rabies. The following factors were significantly associated with human–bat contact: being unaware that bats can transmit diseases like rabies (AOR = 8.63, CI = 1.04, 71.43, p = 0.045), feeling safe to handle bats with bare hands (AOR = 3.47, CI = 1.71, 7.05, p < 0.001), not washing hands thoroughly after bat bite or scratch (AOR = 2.43, CI = 1.29, 4.59, p = 0.006), using water from ponds, rivers or wells (AOR = 5.58, CI = 3.17, 9.79, p <0.001), age > 45 years (AOR = 1.77, CI = 1.0, 3.14, p = 0.047) and a low level of education (AOR = 5.86, CI = 2.97, 11.57, p <0.001). Conclusion: The study findings highlight the key factors to be targeted when developing strategies aimed at improving the community’s knowledge of the potential risks of zoonotic infectious diseases associated with bats and reducing the likelihood of human–bat contact and the related public health risks in communities living near bat roosting sites in Tanzania. Full article

Psittaciformes are one of the bird orders with the highest number of threatened species and the most marked declining population trends. At present, the lack of information on the population size, reproductive fraction, and productivity of most parrot populations makes it difficult to design effective conservation actions. In this study, we monitored a population of Burrowing Parrots (Cyanoliseus patagonus) breeding in urbanized habitats in the southwest of Buenos Aires province, Argentina. Every December and February from 2018 to 2023, we counted the individuals arriving at a single communal roost, located in the main park of Bahía Blanca city, which gathers all the parrots breeding in 18–22 colonies within a radius of 20 km. Censuses were conducted before (December) and immediately after the incorporation of juveniles into the flocks (February). Breeding pairs were also counted annually in the colonies, and the average annual productivity and the proportion of juveniles were estimated from surveys in pre-roosting and feeding areas in February. The non-breeding fraction approached half of the population with no statistically significant differences among years (range: 37–53%), and the breeding population showed little annual variation, with a minimum of 1363 and a maximum of 1612 breeding pairs. The proportion of juveniles in the flocks and the estimated productivity showed larger variations among breeding seasons. Our results add insight to the scarce information available on the breeding-to-non-breeding-population ratios in parrots, and birds in general, and show key breeding parameters for a species that is thriving well in urban habitats. Full article

Climate change is exerting a broad range of (mostly adverse) effects on biodiversity, and more are expected under future scenarios. Impacts on species that deliver key ecosystem services, such as bats, are especially concerning, so their better understanding is key to preventing or mitigating them. Due to their physiological requirements, bats are especially sensitive to environmental temperatures and water availability, and heatwave-related mortality has been reported for flying foxes and, more anecdotally, other bat species. For temperate regions, to date, no study has highlighted an association between temperature extremes and bat mortality, mostly due to the difficulty of relying on data series covering long timespans. Heatwaves may affect bats, causing thermal shock and acute dehydration so bats can fall from the roost and, in some cases, are rescued by the public and brought to wildlife rehabilitation centres (WRCs). In our work, we considered a dataset spanning over 20 years of bat admittance to Italian WRCs, covering 5842 bats, and hypothesised that in summer, the number of admitted bats will increase in hotter weeks and young bats will be more exposed to heat stress than adults. We confirmed our first hypothesis for both the overall sample and three out of five synurbic species for which data were available, whereas hot weeks affected both young and adults, pointing to an especially concerning effect on bat survival and reproduction. Although our study is correlative, the existence of a causative relationship between high temperatures and grounded bats is still the best explanation for the recorded patterns. We urge such a relationship to be explored via extensive monitoring of urban bat roosts to inform appropriate management of bat communities in such environments and preserve the precious ecosystem services such mammals provide, especially insectivory services. Full article

A One Health cross-sectoral surveillance approach was implemented to screen biological samples from bats, pigs, and humans at high-risk interfaces for zoonotic viral spillover for five viral families with zoonotic potential in Viet Nam. Over 1600 animal and human samples from bat guano harvesting sites, natural bat roosts, and pig farming operations were tested for coronaviruses (CoVs), paramyxoviruses, influenza viruses, filoviruses and flaviviruses using consensus PCR assays. Human samples were also tested using immunoassays to detect antibodies against eight virus groups. Significant viral diversity, including CoVs closely related to ancestors of pig pathogens, was detected in bats roosting at the human–animal interfaces, illustrating the high risk for CoV spillover from bats to pigs in Viet Nam, where pig density is very high. Season and reproductive period were significantly associated with the detection of bat CoVs, with site-specific effects. Phylogeographic analysis indicated localized viral transmission among pig farms. Our limited human sampling did not detect any known zoonotic bat viruses in human communities living close to the bat cave and harvesting bat guano, but our serological assays showed possible previous exposure to Marburg virus-like (Filoviridae), Crimean–Congo hemorrhagic fever virus-like (Bunyaviridae) viruses and flaviviruses. Targeted and coordinated One Health surveillance helped uncover this viral pathogen emergence hotspot. Full article

The Eurasian tree sparrow (Passer montanus) is a monomorphic passerine, for which it is impossible to differentiate between males and females based on external characteristics. Being a species frequently captured for ringing, having a reliable method to determine sex from conventional biometric measurements would facilitate its study and be very useful for the correct management and conservation of this declining species. In the present study, we used biometric measurements recorded in 66 individuals captured with mist nets in communal roosts in northern Spain during the winter and sexed them using molecular techniques. We conducted a discriminant function analysis (DFA) to derive equations that allowed us to determine the sex of the specimens from some of the measurements recorded in the field. Significant differences were found between males and females in wing length, third primary length, badge width and height and body weight. The DFA provided two functions that correctly classified the sex of 94.7% of the individuals using wing length and badge width, and 98.2% if weight was added to the analysis. Our results allow sexing from measurements that can be easily recorded in the field with the tools commonly used in banding sessions and without the need for additional training. Considerations of Bergmann’s and Allen’s rules on body size and the use of DFA in different populations are discussed. Full article

The surveillance of behavioral interactions between individuals in bird populations is important to understand social dynamics and explain distribution patterns caused by competition for food and space. For waterbirds, little is known about interactions between individuals at high-tide roosts. In the present study, we used surveying with unmanned aircraft systems (UASs) to provide enhanced information on previously hidden aspects of the highly dynamic communities of roosting waterbirds in the non-breeding season. Fine-scale density estimations, derived from aerial photos obtained with UASs, were used as a measure to explain intra- and inter-species interactions for 10 selected waterbird species on a major roost site in the Danish Wadden Sea. Uniquely defined density distributions were detected, which, to some degree, were dependent on species and species size, with smaller waders exhibiting densely packed flocks (e.g., dunlin Calidris alpina and golden plover Pluvialis apricaria), whereas larger species, such as ducks and geese (Anatidae) exhibited lower densities. Multi-species flocks were observed to occur frequently (31.9%) and generally resulted in lower densities than single-species flocks for each of the species involved. Furthermore, it has been demonstrated that UAS aerial photos can be used both to assess positions for roosting waterbirds and to classify habitats (i.e., mudflats, vegetated areas, waterline, and flooded areas) during high-tide. This facilitated the collection of precise data for temporal habitat choices for individual species when using the studied roost site. Our study highlights UAS surveys as an effective tool to gather hitherto unobtainable data for individual occurrences of roosting waterbirds on a spatiotemporal scale. Full article

Bird populations associated with agricultural ecosystems have declined markedly in Europe during the last quarter of the 20th century due to land-use intensification. This has meant that some very common species, in some cases even species considered as pests, are now threatened or subject to management programs to ensure their conservation. Considered pests of crops and predators of small game species, corvids are among the most persecuted common farmland birds. The consideration that these birds are pests lacks any scientific evaluation and is justified by the subjective impression that they are abundant. Here, using estimates of absolute and relative abundances of both the total and the breeding population, we show how jackdaws Corvus monedula have shown a marked negative population trend in central Spain during the last 40 years. Decline involves the loss of multiple colonies, the apparent absence of the species as a breeder in riverside forests, and an overall numerical decrease of about 75% (from 35,000 to 9000 individuals) according to counts in communal roosts. The population decline seems to be more pronounced in areas where land use has been intensified, probably in response to the reduction in the availability of once-abundant food (i.e., invertebrates and weed seeds) but also due to more direct effects such as intoxication and medium to long-term accumulation of agricultural pollutants which may have also affected reproduction and survival. Intensive hunting over decades has undoubtedly contributed to this decline and should therefore be made forbidden urgently. Generally, it seems that high-intensity agricultural management more drastically affects smaller and less adaptable common species, which are expected to decline before and at a higher extent and magnitude than jackdaws. Given that global population estimates based on direct counts of individuals are readily achievable through simultaneous counts in communal roosts, the jackdaw can serve as a model for assessing temporal trends potentially linked to large-scale anthropogenic modifications of open and agricultural environments. Full article

Based on surveys of winter roost sites, the eastern migratory population of the monarch butterfly (Danaus plexippus) in North America appears to have declined in the last 20 years and this has prompted the implementation of numerous conservation strategies. However, there is little information on the survivorship of first-generation monarchs in the core area of occupancy in Texas, Oklahoma, and Louisiana where overwinter population recovery begins. The purpose of this study was to determine the survivorship of first-generation eggs to third instars at a site in north Texas and to evaluate host plant arthropods for their effect on survivorship. Survivorship to third instar averaged 13.4% and varied from 11.7% to 15.6% over three years. The host plants harbored 77 arthropod taxa, including 27 predatory taxa. Despite their abundance, neither predator abundance nor predator richness predicted monarch survival. However, host plants upon which monarchs survived often harbored higher numbers of non-predatory arthropod taxa and more individuals of non-predatory taxa. These results suggest that ecological processes may have buffered the effects of predators and improved monarch survival in our study. The creation of diverse functional arthropod communities should be considered for effective monarch conservation, particularly in southern latitudes. Full article

We located rural communities with pet parrots and used these locations to predict the probability of illegal parrot ownership across coastal Ecuador, using variables related to demand for pets, parrot availability, and trapping accessibility. In 12 pet keeping communities, we carried out in-depth interviews with 106 people, to quantify ownership, trapping, and interviewees’ attitudes towards these behaviours. We combined these data to calculate a trapping pressure index for four key roosting, feeding and nesting sites for the Critically Endangered Lilacine or Ecuadorian Amazon Parrot Amazona lilacina. We found that 66% of all communities had pet parrots and 31% had pet Lilacines. Our predictive models showed that pet parrot ownership occurs throughout coastal Ecuador, but ownership of Lilacines by rural communities, is more likely to occur within the natural distribution of the species. The number of people per community who had owned Lilacines in the last three years varied from 0–50%, as did the number of people who had trapped them—from 0–26%. We interviewed 10 people who had captured the species in the last three years who reported motives of either to sell or keep birds as pets. Attitudes towards pet keeping and trapping differed among the 12 communities: 20–52% believed it was acceptable to keep pet parrots, and for 32–74%, it was acceptable to catch parrots to sell. This being said, most people believed that wild parrots were important for nature and that local people had a responsibility to protect them. We conclude that trapping pressure is greatest in the southern part of the Lilacine’s range, and urgent conservation measures such as nest and roost protection, and local community engagement are needed. Full article

The desert locust, Schistocerca gregaria, is a major migratory pest that causes substantial agricultural damage. Flying adult swarms disperse widely during the daytime, but they densely roost on plants at night. Swarm control operations are generally conducted during the daytime, but night-time control is a significant potential alternative. However, the night-roosting behavior of swarms is poorly understood. We determined night-roosting plant preferences of migrating sexually immature swarms of S. gregaria at four different sites in the Sahara Desert in Mauritania during winter. The night-roosting sites were divided into two types based on presence or absence of large trees. Swarms tended to roost on the largest trees and bushes at a given site. Swarms used medium-sized plants when large trees were not locally available, but the same medium-sized plant species were hardly used when large trees were available. Plant choice influenced roosting group size—large locust groups roosted on larger plants. Night-roosting locusts rarely fled from approaching observers. These results suggest that swarms of S. gregaria exhibit plasticity in their utilization patterns of night-roosting plants depending on the plant community encountered and they selectively use larger plants. We propose that this predictable plant-size dependent night-roosting can be used to particularly ease locust swarm control and to generally adopt anti-locust night control strategy. Full article

The study examines whether crows are carriers of extraintestinal pathogenic E. coli (ExPEC) and avian pathogenic E. coli (APEC)-like strains, and if wetland roost areas contribute to their spread. A total of 10 crow feces (n = 71) and 15 water E. coli isolates (n = 134) from a wetland area could be characterized as potentially ExPEC based on the presence of ≥2 of the five cardinal genes iutA, kpsMT2, papEF, pap A/C, papG, sfa/foc, and afa/dra, while six fecal and 14 water isolates could be characterized as potentially APEC-like based on the presence of plasmid associated genes: iutA, episomal iss, ompT, hlyF and iroN. A total of 32 fecal and 27 water isolates tested carried plasmids based on incompatibility typing. Plasmids from 34 of 38 isolates tested could be transferred to another E. coli strain by conjugation with the antibiotic resistance (AR) profile being transferred, indicating their potential to be transferred to indigenous and non-pathogenic strains in the wetland. APEC-like plasmids could be transferred in six of eight isolates tested. Pathogenic E. coli of importance to the medical community and poultry industry may be detected in high levels in surface water due to corvid activity. Regardless of their role in health or disease, water in wetlands and streams can serve as a media for the dissemination of AR and virulence traits of bacteria, with corvids acting as potential vectors for farther dissemination. Full article