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6,549 Results Found

  • Article
  • Open Access
51 Citations
5,624 Views
22 Pages

Plant Taxonomic Diversity Better Explains Soil Fungal and Bacterial Diversity than Functional Diversity in Restored Forest Ecosystems

  • Md. Abu Hanif,
  • Zhiming Guo,
  • M. Moniruzzaman,
  • Dan He,
  • Qingshui Yu,
  • Xingquan Rao,
  • Suping Liu,
  • Xiangping Tan and
  • Weijun Shen

6 November 2019

Plant attributes have direct and indirect effects on soil microbes via plant inputs and plant-mediated soil changes. However, whether plant taxonomic and functional diversities can explain the soil microbial diversity of restored forest ecosystems re...

  • Article
  • Open Access
25 Citations
6,604 Views
18 Pages

Profiling the Bacterial Diversity in a Typical Karst Tiankeng of China

  • Gaozhong Pu,
  • Yanna Lv,
  • Lina Dong,
  • Longwu Zhou,
  • Kechao Huang,
  • Danjuan Zeng,
  • Ling Mo and
  • Guangping Xu

While karst tiankengs have a higher capacity to act as safe havens for biodiversity in changing climates, little is known about their soil microorganisms. To fill this gap, we investigate the distribution and driving factors of the bacterial communit...

  • Article
  • Open Access
3 Citations
2,188 Views
11 Pages

Although there have been some studies on pathogenic bacteria and their pathogenicity in animals, few studies have assessed the effects of aquaculture on the diversity of potentially pathogenic bacteria. This study used Illumina sequencing and quantit...

  • Article
  • Open Access
11 Citations
3,160 Views
22 Pages

4 October 2022

Plant secondary succession is a very effective approach for the rejuvenation of degraded ecosystems. In order to comprehend alterations and driving mechanisms of soil bacterial communities under secondary succession of old-field and reveal their subs...

  • Article
  • Open Access
16 Citations
5,056 Views
16 Pages

How Do Soil Bacterial Diversity and Community Composition Respond under Recommended and Conventional Nitrogen Fertilization Regimes?

  • Sami Ullah,
  • Ping He,
  • Chao Ai,
  • Shicheng Zhao,
  • Wencheng Ding,
  • Dali Song,
  • Jiajia Zhang,
  • Shaohui Huang,
  • Tanveer Abbas and
  • Wei Zhou

Shifts in soil bacterial diversity and community composition are suggested to be induced by elevated input of nitrogen (N) fertilization with implications for soil quality, and consequently production. In this study, we evaluated the impacts of recom...

  • Case Report
  • Open Access
11 Citations
2,170 Views
6 Pages

Within-Household Transmission and Bacterial Diversity of Staphylococcus pseudintermedius

  • Alice Wegener,
  • Birgitta Duim,
  • Linda van der Graaf-van Bloois,
  • Aldert L. Zomer,
  • Caroline E. Visser,
  • Mirlin Spaninks,
  • Arjen J. Timmerman,
  • Jaap A. Wagenaar and
  • Els M. Broens

Staphylococcus pseudintermedius can be transmitted between dogs and their owners and can cause opportunistic infections in humans. Whole genome sequencing was applied to identify the relatedness between isolates from human infections and isolates fro...

  • Article
  • Open Access
7 Citations
3,144 Views
15 Pages

Being regarded as one of the environmental problems endangering biodiversity and ecosystem health, acid rain has attracted wide attention. Here, we studied the effects of nitric acid rain (NAR) on the structure and diversity of microbial communities...

  • Article
  • Open Access
15 Citations
3,659 Views
15 Pages

23 June 2021

Citrus orchards receive increasing amounts of nitrogen fertilizer for the purpose of optimal yields and good quality of citrus fruits. Although the effects of increased nitrogen fertilizer on citrus fruit trees have been reasonably well studied, few...

  • Article
  • Open Access
65 Citations
11,181 Views
13 Pages

Stingless Bee Honey: Evaluating Its Antibacterial Activity and Bacterial Diversity

  • Farah Nadiah Rosli,
  • Mohd Hafiz Fikri Hazemi,
  • Muhamad Afiq Akbar,
  • Syazwani Basir,
  • Hakimi Kassim and
  • Hamidun Bunawan

4 August 2020

Stingless bee honey (SBH) is an astounding ‘miracle liquid’ with countless medicinal properties for various diseases such as gastroenteritis, cataracts, as well as for wound-healing. However, knowledge regarding it is still rather scarce....

  • Article
  • Open Access
24 Citations
5,006 Views
13 Pages

Dynamics of Bacterial Community Diversity and Structure in the Terminal Reservoir of the South-To-North Water Diversion Project in China

  • Jiangqi Qu,
  • Chengxia Jia,
  • Qing Liu,
  • Zhi Li,
  • Pan Liu,
  • Mu Yang,
  • Meng Zhao,
  • Wentong Li,
  • Hua Zhu and
  • Qingjing Zhang

31 May 2018

The South-to-North Water Diversion Project (SNWDP) is the largest water transfer project in the world, and its purpose is to relax water constraints in a region facing severe water scarcity. Bacterial communities from these reservoirs are important t...

  • Article
  • Open Access
2 Citations
1,896 Views
14 Pages

Metagenomic Insights into the Bacterial Diversity of Balinese Fermented Sausage (Urutan) from the Household Industry

  • Ida Bagus Agung Yogeswara,
  • Ni Wayan Nursini,
  • I Gusti Ayu Wita Kusumawati and
  • Purwaningtyas Kusumaningsih

Fermented urutan is a dry fermented sausage made from a mixture of pork and Balinese spices, traditionally prepared using conventional methods. However, variations in spices and raw materials may affect the bacterial diversity of urutan. This study a...

  • Article
  • Open Access
15 Citations
4,053 Views
12 Pages

Metagenomic Analysis for Evaluating Change in Bacterial Diversity in TPH-Contaminated Soil after Soil Remediation

  • Jin-Wook Kim,
  • Young-Kyu Hong,
  • Hyuck-Soo Kim,
  • Eun-Ji Oh,
  • Yong-Ha Park and
  • Sung-Chul Kim

24 November 2021

Soil washing and landfarming processes are widely used to remediate total petroleum hydrocarbon (TPH)-contaminated soil, but the impact of these processes on soil bacteria is not well understood. Four different states of soil (uncontaminated soil (co...

  • Article
  • Open Access
27 Citations
9,254 Views
17 Pages

Metagenomic Analysis of Bacterial Diversity in Traditional Fermented Foods Reveals Food-Specific Dominance of Specific Bacterial Taxa

  • Purbajyoti Deka,
  • Gajanan T. Mehetre,
  • Esther Lalnunmawii,
  • Kalidas Upadhyaya,
  • Garima Singh,
  • Abeer Hashem,
  • Al-Bandari Fahad Al-Arjani,
  • Elsayed Fathi Abd_Allah and
  • Bhim Pratap Singh

Traditional fermented foods have been recognized by various communities to be good for health since ancient times. There is a provincial legacy of traditional fermented foods among the ethnic population of North-East India. Fermented bamboo shoots (l...

  • Article
  • Open Access
1 Citations
2,480 Views
15 Pages

Stochastic Processes Shape Bacterial Community Diversity Patterns along Plant Niche Gradients

  • Zhiyuan Yang,
  • Jiayi Xu,
  • Junlin Li,
  • Lirong He,
  • Hongwei Xu,
  • Xinrong Guo,
  • Sha Xue and
  • Yang Cao

17 January 2024

The ecological niche gradient is an important determinant of microbial community structure. In this paper, we studied variation in rhizosphere bacterial diversity and community composition along an ecological niche gradient. We used the high-throughp...

  • Article
  • Open Access
24 Citations
5,010 Views
12 Pages

Meta-Analysis of Organic Fertilization Effects on Soil Bacterial Diversity and Community Composition in Agroecosystems

  • Xiangyang Shu,
  • Weijia Liu,
  • Han Huang,
  • Qinxin Ye,
  • Shunxi Zhu,
  • Zhaohui Peng,
  • Yiding Li,
  • Liangji Deng,
  • Zepeng Yang and
  • Honglin Chen
  • + 2 authors

8 November 2023

Application of organic fertilizers or their combination with chemical fertilizers is a feasible practice for improving soil fertility and reducing soil degradation in agroecosystems, and these regulations are mainly mediated though soil microbial com...

  • Article
  • Open Access
2 Citations
2,474 Views
14 Pages

Towels with complex woven structures are susceptible to biofilm formation during daily use. The composition of biofilms formed on towels used under real-life conditions has yet to be studied. Thus, we investigated the color changes, structural integr...

  • Article
  • Open Access
3 Citations
3,517 Views
15 Pages

Bacterial Diversity in the Asphalt Concrete Lining of the Upper Water Reservoir of a Pumped-Storage Scheme

  • Miroslav Špano,
  • Jaromír Říha,
  • Alena Španová,
  • Ondrej Šedo and
  • Bohuslav Rittich

30 October 2020

Asphalt concrete linings (ACLs) are frequently used in pumped-storage hydropower schemes with frequently oscillating reservoir water levels. ACLs can be damaged during operation, which shortens their service life. One type of damage is the formation...

  • Article
  • Open Access
3 Citations
3,730 Views
15 Pages

Aquatic Bacterial Community Connectivity: The Effect of Hydrological Flow on Community Diversity and Composition

  • Javad Sadeghi,
  • Clare J. Venney,
  • Shelby Wright,
  • James Watkins,
  • Dana Manning,
  • Edel Bai,
  • Chelsea Frank and
  • Daniel D. Heath

Microbial communities are vital components of freshwater ecosystems due to their role in nutrient cycling and energy flow; however, the mechanisms driving their variation are still being explored. In aquatic systems, water flow (hydrology) can impact...

  • Article
  • Open Access
42 Citations
6,643 Views
20 Pages

Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition

  • Akane Chiba,
  • Yoshitaka Uchida,
  • Susanne Kublik,
  • Gisle Vestergaard,
  • Franz Buegger,
  • Michael Schloter and
  • Stefanie Schulz

This study aimed to investigate the effects of different levels of soil- and plant-associated bacterial diversity on the rates of litter decomposition, and bacterial community dynamics during its early phases. We performed an incubation experiment wh...

  • Article
  • Open Access
13 Citations
2,890 Views
14 Pages

Soil bacterial communities and root-associated microbiomes play important roles in the nutrient absorption and healthy growth of host plants. Cinnamomum camphora is an important timber and special economic forest tree species in Fujian Province. In t...

  • Article
  • Open Access
1 Citations
1,926 Views
17 Pages

Bacterial diversity and its distribution characteristics in sediments are critical to understanding and revealing biogeochemical cycles in sediments. However, little is known about the relationship between biogeochemistry processes and vertical spati...

  • Article
  • Open Access
23 Citations
3,553 Views
18 Pages

Effects of Graphene on Bacterial Community Diversity and Soil Environments of Haplic Cambisols in Northeast China

  • Jinfeng Song,
  • Chengwei Duan,
  • Ying Sang,
  • Shaoping Wu,
  • Jiaxin Ru and
  • Xiaoyang Cui

28 October 2018

Graphene is the thinnest and toughest two-dimensional nanomaterial yet discovered. However, it inevitably enters the biosphere, where it may pose potential risks to ecosystems. We investigated the impact of applied graphene concentrations on bacteria...

  • Article
  • Open Access
9 Citations
3,601 Views
16 Pages

Determinants of Soil Bacterial Diversity in a Black Soil Region in a Large-Scale Area

  • Jiacheng Niu,
  • Huaizhi Tang,
  • Qi Liu,
  • Feng Cheng,
  • Leina Zhang,
  • Lingling Sang,
  • Yuanfang Huang,
  • Chongyang Shen,
  • Bingbo Gao and
  • Zibing Niu

12 May 2022

Soils in black soil areas are high in organic matter and rich in nutrients. Soil microorganisms are particularly critical to cultivated land. The objective of this study was to explore the influencing factors of soil bacterial diversity under special...

  • Article
  • Open Access
17 Citations
2,464 Views
14 Pages

Evaluation of Bacterial Diversity and Quality Features of Traditional Sichuan Bacon from Different Geographical Region

  • Song Wang,
  • Xingjie Wang,
  • Wanshu Pan,
  • Aiping Liu,
  • Shuliang Liu,
  • Yong Yang and
  • Likou Zou

19 October 2021

Sichuan bacon is one of the most popular types of Chinese bacon in the domestic market. High-throughput sequencing was used to characterize the bacterial diversity of 39 Sichuan bacon samples collected from 3 geographical regions. The results showed...

  • Article
  • Open Access
42 Citations
5,313 Views
17 Pages

Effects of Phytoremediation Treatment on Bacterial Community Structure and Diversity in Different Petroleum-Contaminated Soils

  • Yuanyuan Shen,
  • Yu Ji,
  • Chunrong Li,
  • Pingping Luo,
  • Wenke Wang,
  • Yuan Zhang and
  • Daniel Nover

Increased exploitation and use of petroleum resources is leading to increased risk of petroleum contamination of soil and groundwater. Although phytoremediation is a widely-used and cost-effective method for rehabilitating soils polluted by petroleum...

  • Article
  • Open Access
10 Citations
3,072 Views
21 Pages

Insight into the Taxonomic and Functional Diversity of Bacterial Communities Inhabiting Blueberries in Portugal

  • Ana C. Gonçalves,
  • Fernando Sánchez-Juanes,
  • Sara Meirinho,
  • Luís R. Silva,
  • Gilberto Alves and
  • José David Flores-Félix

Vaccinium myrtillus is a dwarf shrub of the Ericaceae family with a Palearctic distribution, associated with temperate and cold humid climates. It is widespread on the European continent; on the Iberian Peninsula it is located on Atlantic climate mou...

  • Article
  • Open Access
6 Citations
1,927 Views
17 Pages

16 August 2024

The gut microbiota is a diverse and complex population, and it has a key role in the host’s health and adaptability to the environment. The present study investigated the fecal bacterial community of wild grazing (WG) and domestic grazing (DG)...

  • Article
  • Open Access
5 Citations
3,025 Views
13 Pages

In this study, high-throughput sequencing technology was used to analyze the bacterial diversity of sauerkraut produced at home and in factories in Chaozhou. The differences in bacterial community structure among different sauerkraut samples were stu...

  • Article
  • Open Access
1 Citations
1,298 Views
15 Pages

Conversion to Greenhouse Cultivation from Continuous Corn Production Decreases Soil Bacterial Diversity and Alters Community Structure

  • Yaqiong Fan,
  • Yamin Jia,
  • Xinyang Zhang,
  • Guoqiang Geng,
  • Ronghao Liu,
  • Lixia Shen,
  • Jingjuan Hu and
  • Xinmei Hao

20 September 2024

Changes in crop types and long-term monoculture substantially impact soil microbial communities. Exploring these changes and their influencing factors is of great significance for addressing the challenges posed by continuous cropping. Soil surface l...

  • Article
  • Open Access
629 Views
15 Pages

The increased production of sewage sludge is a major environmental concern as the sludge contains hazardous components, particularly human bacterial pathogens (HBPs). Transit of sewage sludge through the earthworm gut reduce or even eliminate HBPs an...

  • Article
  • Open Access
12 Citations
3,084 Views
13 Pages

Reducing nitrogen fertilizer application highlights its role in optimizing soil bacterial communities to achieve sustainable agriculture. However, the specific mechanisms of bacterial community change under these conditions are not yet clear. In this...

  • Article
  • Open Access
20 Citations
8,354 Views
15 Pages

In Situ Cultured Bacterial Diversity from Iron Curtain Cave, Chilliwack, British Columbia, Canada

  • Soumya Ghosh,
  • Elise Paine,
  • Rob Wall,
  • Gabrielle Kam,
  • Tanna Lauriente,
  • Pet-Chompoo Sa-ngarmangkang,
  • Derrick Horne and
  • Naowarat Cheeptham

29 August 2017

The culturable bacterial diversity from Iron Curtain Cave, Chilliwack, British Columbia, Canada was examined. Sixty five bacterial isolates were successfully cultivated, purified, and identified based on 16S rRNA gene sequencing. Four distinguishable...

  • Article
  • Open Access
49 Citations
6,952 Views
16 Pages

17 April 2019

Land-use change from natural to managed agricultural ecosystems significantly impacts soil bacterial diversity and function. The Eastern Free State (EFS) is one of the most productive agricultural regions in South Africa. However, no studies aiming t...

  • Article
  • Open Access
13 Citations
4,621 Views
19 Pages

Bacterial Diversity in a Dynamic and Extreme Sub-Arctic Watercourse (Pasvik River, Norwegian Arctic)

  • Maria Papale,
  • Alessandro Ciro Rappazzo,
  • Anu Mikkonen,
  • Carmen Rizzo,
  • Federica Moscheo,
  • Antonella Conte,
  • Luigi Michaud and
  • Angelina Lo Giudice

4 November 2020

Microbial communities promptly respond to the environmental perturbations, especially in the Arctic and sub-Arctic systems that are highly impacted by climate change, and fluctuations in the diversity level of microbial assemblages could give insight...

  • Article
  • Open Access
14 Citations
3,743 Views
13 Pages

Host Species Affects Bacterial Evenness, but Not Diversity: Comparison of Fecal Bacteria of Cows and Goats Offered the Same Diet

  • Tiziana Maria Mahayri,
  • Kateřina Olša Fliegerová,
  • Silvana Mattiello,
  • Stefania Celozzi,
  • Jakub Mrázek,
  • Chahrazed Mekadim,
  • Hana Sechovcová,
  • Simona Kvasnová,
  • Elie Atallah and
  • Giuseppe Moniello

9 August 2022

The aim of this study was to compare the diversity and composition of fecal bacteria in goats and cows offered the same diet and to evaluate the influence of animal species on the gut microbiome. A total of 17 female goats (Blond Adamellan) and 16 fe...

  • Article
  • Open Access
3 Citations
3,068 Views
12 Pages

Effect of Energy Provision Strategy on Rumen Fermentation Characteristics, Bacterial Diversity and Community Composition

  • Qinghua Qiu,
  • Jiantong Zhang,
  • Mingren Qu,
  • Yanjiao Li,
  • Xianghui Zhao and
  • Kehui Ouyang

This study was conducted to explore the rumen fermentation characteristics, bacterial diversity, and community composition of Hu sheep under four energy provision strategies. Ninety-six Hu sheep (body weight: 17.78 ± 1.24 kg) were equally assi...

  • Article
  • Open Access
8 Citations
2,594 Views
14 Pages

Impact of Insect-Resistant Transgenic Maize 2A-7 on Diversity and Dynamics of Bacterial Communities in Rhizosphere Soil

  • Xiaohui Xu,
  • Xin Liu,
  • Fan Li,
  • Chaofeng Hao,
  • Hongwei Sun,
  • Shuke Yang,
  • Yue Jiao and
  • Xingbo Lu

21 May 2023

Artificial modification of Bacillus thuringiensis (Bt) proteins can effectively improve their resistance to target pests, but the effect of such modification on the diversity of rhizosphere microorganisms remains unclear. Transgenic maize 2A-7 contai...

  • Article
  • Open Access
361 Views
17 Pages

Plant Diversity Exerts a Stronger Influence than Short-Term Climate Manipulations on the Structure of Soil Bacterial Communities

  • Mingxuan Yi,
  • Pengfei Cong,
  • Dongming Zhang,
  • Jiangong You,
  • Yan Zhang,
  • Wentao Jing and
  • Liwen Shang

Soil microbial communities face the combined pressures of climate change and biodiversity loss, yet how these stressors interact to shape ecosystem function remains a critical uncertainty. To investigate this, we established a constructed grassland p...

  • Article
  • Open Access
9 Citations
5,664 Views
18 Pages

Bacterial Diversity and Dominant Spoilage Microorganisms in Fresh-Cut Broccoli

  • Siqi Cui,
  • Xiaolu Yu,
  • Ya Chen,
  • Jianli Zhang and
  • Guangmin Liu

25 March 2022

Different cutting types not only affect the quality and bioactive substances of broccoli but may produce wounding stress that influences the quantity and diversity of microorganisms and finally leads to safety concerns. In this study, three different...

  • Article
  • Open Access
13 Citations
3,477 Views
16 Pages

Our understanding on the effects of tillage intensity on the soil microbial community structure and composition in crop production systems are limited. This study evaluated the soil microbial community composition and diversity under different tillag...

  • Article
  • Open Access
3 Citations
3,601 Views
18 Pages

The Impact of Selective Dry Cow Therapy Adopted in a Brazilian Farm on Bacterial Diversity and the Abundance of Quarter Milk

  • Juliano L. Goncalves,
  • Juliana Young,
  • Renata de F. Leite,
  • Carlos E. Fidelis,
  • Priscila A. Trevisoli,
  • Luiz L. Coutinho,
  • Nathália C. C. Silva,
  • Roger I. Cue,
  • Vera Lucia Mores Rall and
  • Marcos V. dos Santos

8 October 2022

We aimed to evaluate the impact of selective dry cow therapy (SDCT) (protocol 1: antimicrobial combined with internal teat sealant (ITS); vs. protocol 2: ITS alone) on bacterial diversity and the abundance of quarter milk. Eighty high production cows...

  • Article
  • Open Access
109 Citations
9,430 Views
14 Pages

Soil bacteria play a major role in ecological and biodegradable function processes in oil-contaminated soils. Here, we assessed the bacterial diversity and changes therein in oil-contaminated soils exposed to different periods of oil pollution using...

  • Article
  • Open Access
15 Citations
3,443 Views
18 Pages

28 February 2023

The accumulation of biowastes is one of the main concerns of modern society. One of the most environmentally friendly solutions to convert biowaste into a product is composting. Biowastes may contain unknown substances that are persistent in the fina...

  • Review
  • Open Access
10 Citations
3,282 Views
29 Pages

Taxonomic Diversity and Functional Traits of Soil Bacterial Communities under Radioactive Contamination: A Review

  • Elena Belykh,
  • Tatiana Maystrenko,
  • Ilya Velegzhaninov,
  • Marina Tavleeva,
  • Elena Rasova and
  • Anna Rybak

Studies investigating the taxonomic diversity and structure of soil bacteria in areas with enhanced radioactive backgrounds have been ongoing for three decades. An analysis of data published from 1996 to 2024 reveals changes in the taxonomic structur...

  • Article
  • Open Access
16 Citations
2,693 Views
17 Pages

High Ammonium Addition Changes the Diversity and Structure of Bacterial Communities in Temperate Wetland Soils of Northeastern China

  • Xiaohong Weng,
  • Mingyu Wang,
  • Xin Sui,
  • Beat Frey,
  • Yingnan Liu,
  • Rongtao Zhang,
  • Hongwei Ni and
  • Maihe Li

The soil microbiome is an important component of wetland ecosystems and plays a pivotal role in nutrient cycling and climate regulation. Nitrogen (N) addition influences the soil’s microbial diversity, composition, and function by affecting the...

  • Article
  • Open Access
1,020 Views
15 Pages

Soil bacterial community composition and diversity can be an important bioindicator for assessing ecosystem stability, and photovoltaic (PV) shading is a key factor influencing soil bacterial communities in rocky desertification areas; however, how t...

  • Article
  • Open Access
5 Citations
4,110 Views
22 Pages

30 March 2021

Freshwater ecosystems are affected by anthropogenic alterations. Different studies have extensively studied the concentrations of metals, nutrients, and water quality as measurements of pollution in freshwater ecosystems. However, few studies have be...

  • Article
  • Open Access
6 Citations
2,351 Views
16 Pages

Agriophara rhombata is a tea leaf moth that is considered one of the most destructive pests of Camellia sinensis (tea plant). Several recent studies have shown that many insects acquire part of the microbiome from their host and soil, but the pattern...

  • Article
  • Open Access
5 Citations
2,665 Views
15 Pages

19 May 2022

The characteristics of plant and soil bacterial communities in forest ecosystems have been reported, but our understanding of the relationship between plant communities and soil bacteria in different stages of secondary tropical rainforest succession...

  • Article
  • Open Access
5 Citations
3,837 Views
17 Pages

The Structure and Diversity of Bacterial Communities in Differently Managed Soils Studied by Molecular Fingerprinting Methods

  • Katarína Ondreičková,
  • Michaela Piliarová,
  • Rastislav Bušo,
  • Roman Hašana,
  • Ľudovít Schreiber,
  • Jozef Gubiš and
  • Ján Kraic

5 April 2018

The soil bacterial community structure is sensitive to different agricultural management practices and changes in the soil community composition can affect ecosystem sustainability and ecosystem stability. The basic idea of reduced and conservation s...

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