Search Results (1,825)

This study aimed to investigate the structural differences and functional potential of the gut microbiota between Sichuan-Tibetan black pigs (n = 5) and Landrace pigs (n = 5) under identical rearing conditions. Fecal samples were collected and subjected to 16S rRNA gene sequencing followed by comprehensive bioinformatics analysis. The results revealed 963 and 910 operational taxonomic units (OTUs) in Sichuan-Tibetan black pigs and Landrace pigs, respectively, with 808 OTUs shared between the two breeds. While both breeds shared Firmicutes, Bacteroidota, and Proteobacteria as the dominant phyla, significant compositional differences were observed at the genus level. Sichuan-Tibetan black pigs exhibited higher abundance of Escherichia-Shigella, Streptococcus, Prevotella, Parabacteroides, and Collinsella, whereas Landrace pigs were enriched in Bacteroides. Alpha diversity analysis showed no significant differences in Shannon, Simpson, or ACE indices, though the Chao index differed markedly between the two groups. Beta diversity analysis (PCoA and NMDS) confirmed distinct microbial community structures between the breeds. Functional prediction analysis demonstrated that metabolic pathways dominated in both groups, but with notable functional differentiation: the microbiota of Sichuan-Tibetan black pigs showed significant enrichment in biosynthesis of secondary metabolites, microbial metabolism in diverse environments, and amino acid biosynthesis; whereas, Landrace pigs were characterized by enhanced carbon and energy metabolism pathways. Additionally, BugBase phenotype prediction revealed significant differences in stress tolerance, cell wall properties, and oxygen utilization capabilities between the two groups. These findings provide valuable insights into the breed-specific characteristics of gut microbiota in swine and establish a foundation for further research on host-microbe interactions and their implications for animal health and nutrition. Full article

Gut microbial communities perform a multitude of physiological functions for their hosts; however, the drivers and distribution patterns of microbiota in wild animals remain largely underexplored. Our understanding of how these microbial communities are structured across hosts in natural environments—especially within a single host species remains limited. Here, we characterized the gut microbial communities of four species of ocean fish using 16S rRNA high-throughput sequencing to investigate the structural and functional features of these microbial communities across different fish species. By comparing the gut microbiota compositions of blue sharks (Prionace glauca), bigeye tuna (Thunnus obesus), sickle pomfret (Taractichthys steindachneri), and mackerel (Scomber japonicus), we identified several microbial taxa—including Photobacterium, Pelomonas, Ralstonia, and Rhodococcus—that were consistently detected across all samples, indicating they likely constitute a “common microbiota”. However, the relative abundances of these taxa varied significantly among species, with Photobacterium exhibiting the highest diversity. Blue sharks and bigeye tuna harbored relatively few dominant microbial species, but the abundance of these dominant bacteria was remarkably high, and inter-individual differences in microbial composition were pronounced. In contrast, mackerel and sickle pomfret contained a greater variety of dominant genera, each with low relative abundance, and inter-individual differences within the same species were minimal. Functionally, metabolic pathways, biosynthesis of secondary metabolites, and microbial metabolism represent the predominant functional categories of the intestinal microbiota in marine fish, with only minor interspecific differences observed. In contrast, biosynthesis of amino acids, ABC transporters, and two-component systems are the key functional pathways that exhibit significant variations across different fish species. Collectively, these findings reveal differences in gut microbial stability among different fish hosts. Such variations may be associated with the hosts’ energy utilization needs, and changes in the gut microbiota play a critical role in shaping the diverse survival strategies of these fish species. Full article

Integrated multi-trophic aquaculture (IMTA) has emerged as an ecological intensification strategy capable of enhancing nutrient utilization and improving environmental stability in mariculture systems, yet the microbial mechanisms driving nutrient transformations remain insufficiently understood. This study investigated how culture mode (IMTA vs. monoculture) shape water quality, sediment microbial communities, and nutrient cycling processes in a shrimp–sea urchin system by combining water-quality monitoring, nutrient analysis, 16S rRNA high-throughput sequencing, and redundancy analysis. IMTA significantly increased turbidity, chlorophyll-a, phosphate, ammonium, and nitrite compared with monoculture, while physico-chemical parameters remained stable. Sediment microbiota in IMTA exhibited substantially higher alpha diversity and showed a clear compositional separation from monoculture communities. At the genus level, IMTA sediments were enriched in Vibrio, Motilimonas, and Ruegeria, distinguishing them from monoculture systems. At the phylum level, IMTA was characterized by increased abundances of Proteobacteria and Bacteroidota, accompanied by a marked decline in Spirochaetota. Functional predictions indicated that microbial communities were predominantly characterized by pathways related to amino acid and carbohydrate metabolism, as well as nutrient remineralization. RDA and correlation analyses further identified turbidity, chlorophyll-a, phosphate, ammonium, and nitrite as the principal drivers of microbial divergence. Overall, the findings demonstrate that IMTA reshapes sediment microbial communities toward more efficient nutrient-processing assemblages, thereby promoting active nitrogen and phosphorus transformations and improving biogeochemical functioning relative to monoculture. These results provide mechanistic insight into how IMTA supports nutrient recycling and environmental sustainability in modern mariculture systems. Full article

Background/Objectives: Essential amino acids’ (EAAs) biological effects depend on both gastrointestinal stability and intestinal bioavailability. A commercially available EAA blend has previously shown to be highly bioaccessible and able to inhibit the DPP-IV enzyme both directly and at a cellular level following simulated digestion in vitro. In light with this consideration, the present study aimed to evaluate the intestinal in vitro bioavailability of GAF subjected to INFOGEST digestion (iGAF) and to investigate the metabolic effects of its bioavailable fraction on muscle cells using an integrated Caco-2/C2C12 co-culture model. Methods: Differentiated Caco-2 cell lines were treated with iGAF, and amino acid transport was quantified by ion-exchange chromatography. The basolateral fraction containing bioavailable EAAs was used to treat differentiated C2C12 myotubes for 24 h. Western blot analyses were performed to assess the activation of anabolic and metabolic pathways, including mTOR, Akt, GSK3, AMPK and GLUT-4. Results: More than 50% of each EAA present in iGAF crossed the Caco-2 monolayer, with BCAAs and phenylalanine particularly enriched in the basolateral fraction. Exposure of C2C12 myotubes to the bioavailable iGAF stimulated mTORC1 activation and increased the phosphorylation of Akt and GSK3, indicating an enhanced anabolic response. At a cellular level, iGAF also elevated the p-AMPK/AMPK ratio, suggesting activation of energy-sensing pathways. Moreover, GLUT4 protein levels and glucose uptake were significantly increased. Conclusions: The study focuses exclusively on a cellular model, and results suggested that iGAF is highly bioavailable in vitro and that its absorbed fraction activates key anabolic and metabolic pathways of skeletal muscle cells, enhancing both protein synthesis signaling and glucose utilization in vitro. Full article

Amino acid availability is central for the synthesis of macromolecules and numerous bioactive compounds. Amino acids are also involved in ATP production, cell signaling, and the epigenetic regulation of gene expression in human cells. From clinical and experimental studies, it appears that supplementation with specific amino acids may be relevant to correct for amino acid deficiency in the case of insufficient supply from dietary proteins with regards to the amounts needed for optimal metabolism and physiological functions. Clinical and experimental arguments suggest that amino acid supplementation may be indicated in specific situations under a specific nutritional context. However, it is essential not to overdose with excessive quantities of amino acids in supplements beyond the upper levels of safe intake (ULSI). In this narrative review, I recapitulate the protein and amino acid requirements for the general population and for subgroups of the population, and these requirements are compared to the usual consumption. Typical examples of clinical trials showing the benefits from amino acid supplementation in different physiological and pathophysiological contexts are presented together with results obtained from experimental studies. Parameters such as the no-observed-adverse-effect-level (NOAEL) values used to determine the ULSI for amino acid supplementation are defined, and values determined in clinical trials are given and discussed. Finally, prospects for future research in the field are proposed. Full article

Climate change poses a threat to global rice production by increasing the frequency and intensity of extreme weather events. The widespread cultivation of genetically uniform modern varieties has narrowed the genetic base of rice, increasing its vulnerability to these increased pressures. Rice landraces are traditional rice varieties that have been cultivated by farming communities for centuries and are considered crucial resources of genetic diversity. These landraces are adapted to a wide range of agro-ecological environments and exhibit valuable traits that provide tolerance to various biotic stresses, including drought, salinity, nutrient-deficient soils, and the increasing severity of climate-related temperature extremes. In addition, many landraces possess diverse alleles associated with resistance to biotic stresses, including pests and diseases. In addition, rice landraces exhibit great grain quality characters including high levels of essential amino acids, antioxidants, flavonoids, vitamins, and micronutrients. Hence, their preservation is vital for maintaining agricultural biodiversity and enhancing nutritional security, especially in vulnerable and resource-limited regions. However, rice landraces are increasingly threatened by genetic erosion due to widespread adoption of modern high-yielding varieties, habitat loss, and changing farming practices. This review discusses the roles of rice landraces in developing resilient and climate-smart rice cultivars. Moreover, the Pantiange Heigu landrace, cultivated at one of the highest altitudes globally in Yunnan Province, China, has been used as a case study for integrated conservation by demonstrating the successful combination of in situ and ex situ strategies, community engagement, policy support, and value-added development to sustainably preserve genetic diversity under challenging environmental and socio-economic challenges. Finally, this study explores the importance of employing advanced genomic technologies with supportive policies and economic encouragements to enhance conservation and sustainable development of rice landraces as a strategic imperative for global food security. By preserving and enhancing the utilization of rice landraces, the agricultural community can strengthen the genetic base of rice, improve crop resilience, and contribute substantially to global food security and sustainable agricultural development in the face of environmental and socio-economic challenges. Full article

Bifidobacterium animalis subsp. lactis is a widely used probiotic, yet its efficacy is highly strain-specific, and growing antibiotic resistance necessitates rigorous safety evaluations. We used whole-genome sequencing and in vitro assays to characterize the safety and probiotic traits of infant feces-sourced strain BD1, which shows preliminary mood-modulating and anti-inflammatory potential. The BD1 genome showed a favorable safety profile. VFDB analysis identified 139 low-similarity homologs, with no major toxins detected. Only four chromosomally encoded antibiotic resistance genes were found; phenotypic testing confirmed resistance solely to tetracycline and mupirocin. Although the tetracycline resistance gene tet(W) was identified in genomic island GI01, the absence of associated mobile genetic elements results in a negligible risk of its mobilization. Functional annotation highlighted a dominant metabolic capacity for carbohydrate and amino acid metabolism. BD1 is rich in CAZymes, enabling superior utilization of diverse substrates (starch, sucrose, galactose). Enrichment in lipid metabolism pathways (glycerolipid, sphingolipid) further suggests potential for enhancing fermented product flavor. In vitro assessment demonstrated moderate gastrointestinal tolerance and strong bile salt tolerance. Surface properties showed pronounced cell surface hydrophobicity and confirmed biofilm-forming potential. In conclusion, BD1 exhibits robust safety, metabolic versatility, and strong probiotic characteristics, supporting its development as a functional probiotic strain. Full article

The spoilage phenotype of microorganisms is a key mechanism leading to food spoilage, but how their metabolic environment affects the spoilage phenotype remains unclear. This study utilized metabolomics and spoilage phenotype analysis to reveal metabolic differences between different quorum sensing (QS) genotypes of Hafnia. alvei H4 and their impact on spoilage phenotypes. Ultra-high performance liquid chromatography–fluorescence detection revealed that the QS system participated in the differential metabolic regulation of eight amino acids, with serine exerting the most significant influence on the spoilage phenotype. Subsequent studies demonstrated that QS-promoted serine inhibited bacterial motility by affecting the biosynthesis of rhamnolipid (rather than c-di-GMP) and inhibiting flagellar/chemotactic genes expression. Moreover, QS-promoted serine induced the difference of bacterial inner membrane, further inhibiting bacterial motility. These findings provided fundamental information for the control of biofilms conformation within complex food nutritional background. Full article

This study first adopted a liquid microbial-enzymatic co-fermentation process to enhance the nutritional value of walnut meal (WM) and sesame meal (SM), and systematically evaluated its effect on the nutrient digestibility of growing pigs. WM and SM are two underutilized high-protein by-products, whose application is hindered by anti-nutritional tannin and fiber. Optimal fermentation parameters were determined via single-factor experiments and response surface methodology, utilizing a consortium of Lactobacillus I, Candida utilis, and protease. Fermentation significantly reduced tannin (39.41% in WM) and crude fibre (28.79% in WM), reduced tannin (18.67% in SM) and crude fibre (4.00% in SM), while elevating crude protein (10.63% in WM, 7.47% in SM) and acid-soluble protein in both WM and SM. Results of the microstructure of fermented WM and SM revealed structural loosening, surface porosity, and polysaccharide degradation. Microbial community shifts highlighted the dominance of Lactobacillus and Bacillus in fermented substrates. In growing pigs, fermented WM and SM exhibited improved standardized ileal digestibility (SID) of key amino acids (threonine, tryptophan, valine; p < 0.05), alongside enhanced digestible energy (DE) and metabolizable energy (ME) for SM (p < 0.05). These findings demonstrate that liquid co-fermentation effectively degrades anti-nutritional factors, enhances nutrient bio-availability, and positions WM and SM as viable alternatives to conventional protein sources in swine diets, supporting strategies to reduce reliance on soybean meal. Full article

Eucommia ulmoides Oliv. (E. ulmoides), an endemic tree species in China, holds significant value in traditional Chinese medicine industry and health food. The plant is rich in diverse bioactive compounds, including lignans, iridoids, flavonoids, polysaccharides, E. ulmoides gum, amino acids, and minerals. These components contribute to a range of pharmacological activities such as anti-inflammatory, antioxidant, antihypertensive, immunomodulatory, and bone-protective effects, which support its long-standing traditional use and emerging clinical and adjunctive applications. While current research has predominantly focused on the bark and leaves, other parts, such as flowers, seeds, stems and roots, remain underexplored despite their substantial potential for medicinal and edible applications. Based on the recent literature, this paper systematically summarized the chemical composition, health benefits, and comprehensive utilization of different parts of E. ulmoides (bark, leaves, flowers, and seeds), aiming to provide a theoretical foundation for the high-value utilization of the entire plant resources of E. ulmoides. As a health-promoting plant resource, E. ulmoides has extensive development potential in applications such as health foods, natural medicines, and agricultural inputs. Future research should prioritize elucidating the synergistic mechanisms among different active compounds, advancing technologies for multi-part utilization, and establishing standardized quality evaluation systems to facilitate broader applications in functional foods, pharmaceuticals, and related interdisciplinary fields. Full article

Platycladus orientalis exhibits significant potential as an antioxidant, anti-inflammatory, and hair growth-promoting ingredient, while the low bioavailability of raw Platycladus orientalis leaves extracts limits their further application. In this study, yeast fermentation was employed to prepare Platycladus orientalis Leaves Yeast Fermented Solution (PYFS). Its performance on human dermal papilla cells (HDPCs) was systematically investigated. The optimal fermentation strain was screened using the methyl thiazolyl tetrazolium (MTT) assay, and Saccharomycopsis fibuligera CICC33226 (SF) was identified as the most suitable strain for fermentation. The effects of PYFS on the cell cycle distribution, growth factors, inflammatory factors of HDPCs, as well as its hair growth-promoting mechanism, were investigated. Experiments revealed that after fermentation, the proportion of cells in the G0/G1 phase decreased by 11.09%, while the proportion of cells in the S phase increased by 35.44%. Additionally, the level of the growth factor VEGF increased by 42.34%, while the level of the inflammatory factor TGF-β1 decreased by 23.81%. Moreover, the fermentation process correlates with altered mRNA expression of Wnt/β-catenin pathway-related genes by upregulating the mRNA expression levels of β-catenin, DVL1, and LEF1, and downregulating the mRNA expression level of DKK-1. Finally, non-targeted metabolomics technology was used to analyze the metabolite changes after fermentation. The most significant differential metabolites mainly include flavonoids, amino acids and their derivatives, and organic acids and their derivatives. This study utilized microbial fermentation technology to prepare the yeast fermentation solution, selected the optimal fermentation strain, and demonstrated that its fermentation product significantly promotes HDPC metabolic activity, supports hair follicle health by regulating the balance of growth factors, alters expression patterns of Wnt/β-catenin pathway-related genes, and substantially alters the metabolite composition of Platycladus orientalis leaves extract through fermentation. Full article

The maximum protein or nitrogen deposition is commonly used as the basis for modeling the amino acid intake in growing birds. In previous studies, the exponential functions of the nitrogen balance data were used to estimate the theoretical maximum for nitrogen deposition (ND_maxT) as a reference model for the amino acid intake. However, this amino acid intake value is only valid for the period in which the ND_maxT was estimated. Additionally, physiological changes, such as the rapid development of reproductive organs and associated increases in protein deposition that occur in the period before the first egg is laid, should be considered in the models. Thus, this study was conducted to model the daily ND_maxT of pullets and integrate this value into the factorial model to estimate the daily methionine + cysteine (Met+Cys) intake. Our results showed that, up to 63 days of age, the values of ND_maxT obtained via the modeling procedure were 11% higher than the values predicted using the Gompertz function. At 105 days, there was a protein deposition peak from the growth of the reproductive organs, which contributed 14% of the variation in the model in this age. Alongside these factors, the integration of the models enabled daily Met+Cys estimates consistent with the literature; however, the recommendations varied according to the targeted daily protein deposition (50% or 60% of ND_maxT), daily feed intake, and amino acid utilization efficiency. The modeling approach demonstrated here for Met+Cys can be used to model other amino acid requirements and can be extended to other species. Full article

Selenium-Binding Protein 1 (SBP1), involved in selenium metabolism, contributes to plant stress response. However, it is currently unknown whether the SBP1 protein from Liriodendron hybrid (LhSBP1) plays a role in response to cold stress. In this study, transgenic overexpression lines of LhSBP1 in Arabidopsis thaliana and Populus deltoides × P. euramericana cv. ‘Nanlin 895’, were used as materials to conduct phenotypic observations and physiological and biochemical determinations under cold stress. The results showed that the full-length CDS sequence of LhSBP1 gene was cloned, with a length of 1467 bp, encoding 488 amino acids. Under cold stress, physiological and biochemical indexes showed that the contents of reactive oxygen species (ROS) and malondialdehyde (MDA) in transgenic Arabidopsis were lower, with the contents of hydrogen peroxide (H₂O₂) and superoxide anion (O₂⁻) being 0.72 and 0.71 times those of the wild type, respectively, and the MDA content was 0.53 times that of the wild type. Compared with the wild type, the activities of antioxidant enzymes including superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT) increased by 1.2, 1.75, and 1.48 times respectively, and the soluble protein content increased by 1.41 times, which significantly improved the cold tolerance of Arabidopsis. The contents of H₂O₂, O₂⁻, and MDA in LhSBP1 transgenic ‘Nanlin 895’ poplar were 0.63 and 0.67 times and 0.6 times those of wild type, respectively. The activities of SOD, POD and CAT were increased by 1.37, 1.48, and 1.44 times, and the soluble protein was increased by 1.28 times, which significantly improved the cold tolerance of ‘Nanlin 895’ poplar. Taken together, this study utilized two model plant systems to demonstrate the positive and conserved functions of LhSBP1 in plant cold tolerance defense response, which provided valuable genetic resources for the breeding of cold-tolerance woody plants. Full article

Background/Objectives: Breast cancer is a prevalent and heterogeneous disease with multiple subtypes, which are defined by characteristics such as molecular biomarkers and metastatic status. This study aimed to profile the metabolic activity of various breast cancer subtypes, both with and without chemotherapy (doxorubicin) application. Methods: Six human breast cell lines were evaluated, two non-tumorigenic controls and four cancerous lines. The cancer lines were clustered as primary-derived, metastasis-derived, triple-negative (TNBC), and strong hormone receptor-positive (ER+/PR+) and analyzed using the Biolog phenotype mammalian microarrays (PM-M1 to PM-M8) to assess metabolic activity via NADH production under a wide array of substrate parameters. Results: Unique metabolic profiles emerged across the subtypes and clusters; the TNBC and metastatic cells demonstrated enhanced utilization of glycolytic and anaerobic substrates consistent with the Warburg effect. The ER+/PR+ cells showed heightened glucose utilization and unique sensitivity to metabolic effectors and doxorubicin. Additionally, significant metabolic differences were observed in nucleoside and amino acid utilization between cancer and control cells, particularly in metastatic and TNBC lines. Conclusions: Our findings reveal the profound metabolic diversity among breast cancer subtypes and highlight distinct substrate dependencies for proliferation. The results additionally provide a framework for developing metabolic biomarkers and targeted therapies for chemotherapy resistance in breast cancer subtypes. Full article

Glucagon is a peptide hormone secreted by pancreatic alpha cells which elevates blood glucose and plays a critical role in diabetes onset and homeostasis. The accurate assessment of glucagon concentration is challenging due to its structural similarity with other hormones, causing cross-reactivity in antibody-based methods. Rapid and specific glucagon detection is essential, particularly during hypoglycemia. This study aimed to develop glucagon-specific probes combining high specificity, rapid detection, and ease of operation. We designed novel peptide-based probes by screening glucagon-binding peptides from the glucagon receptor sequence using a peptide array method. This strategy, based on receptor amino acid sequences, can be applied to the identification of binding peptides for other hormones, expanding its potential utility. The screened peptides were conjugated with fluorescent dyes to create probes enabling detection within 30 min. The developed probes demonstrated superior specificity for glucagon relative to similar sequence analogs compared with conventional antibody-based methods, with detection limits in the nanomolar range. This study represents a proof-of-concept approach for rapid and highly specific glucagon detection. However, further optimization of probe sensitivity and validation under physiological conditions will be required before clinical or diagnostic application. These improvements in the probe’s properties will enable the reliable blood glucagon detection and accurate diagnostic assessment of diabetes-related diseases. Full article