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Keywords = allergen adsorption

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18 pages, 15800 KB  
Article
Molecular Dynamics Studies on Epitope-Resolved Structural Dynamics and Energetics of Japanese Cedar Cry j 1 Allergen Adsorption onto PET Microplastics
by Tochukwu Oluwatosin Maduka, Qingyue Wang and Christian Ebere Enyoh
Physchem 2026, 6(2), 29; https://doi.org/10.3390/physchem6020029 - 19 May 2026
Viewed by 118
Abstract
The interaction between airborne allergens and environmental microplastics is an emerging concern in the context of increasing plastic pollution and allergic disease prevalence. In this study, we investigated the molecular interaction between Cry j 1, the major allergen of Japanese cedar (Cryptomeria [...] Read more.
The interaction between airborne allergens and environmental microplastics is an emerging concern in the context of increasing plastic pollution and allergic disease prevalence. In this study, we investigated the molecular interaction between Cry j 1, the major allergen of Japanese cedar (Cryptomeria japonica) pollen, and polyethylene terephthalate (PET) microplastic surfaces using all-atom molecular dynamics simulations integrated with computational epitope selection analyses. The simulations showed that Cry j 1 adsorbs onto PET primarily through hydrophobic and van der Waals interactions, with residues Pro165, Ala227, Tyr228, and Val163 contributing prominently to surface association. Mapping of selected epitope regions indicated that several linear B-cell epitopes remained solvent exposed following adsorption, whereas two CD4+ T-cell epitope regions (T5 and T6) contributed more directly to PET interaction. PET adsorption was accompanied by moderate changes in conformational dynamics, including reduced residue-level flexibility and localized secondary-structure adjustments, while the overall protein fold remained structurally stable throughout the simulation. Small decreases in radius of gyration and solvent-accessible surface area suggested mild adsorption-associated compaction rather than major unfolding. These findings indicate that PET association can influence the structural dynamics and interfacial behavior of Cry j 1 without extensive disruption of its global architecture. Because the study is entirely computational, the immunological implications remain hypothetical and require experimental validation. Nevertheless, this work provides a molecular-level framework for understanding how airborne microplastics may influence allergen behavior and protein-surface interactions in polluted atmospheric environments. Full article
(This article belongs to the Section Theoretical and Computational Chemistry)
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21 pages, 3143 KB  
Article
Polyethylene Terephthalate Micro/Nano-Plastics Induce Structural and Conformational Changes in Cedar Pollen Proteins: Spectroscopic and Molecular Dynamics Evidence
by Tochukwu Oluwatosin Maduka, Qingyue Wang, Christian Ebere Enyoh, Miho Suzuki, Weiqian Wang and Md. Sohel Rana
Appl. Sci. 2026, 16(3), 1577; https://doi.org/10.3390/app16031577 - 4 Feb 2026
Cited by 1 | Viewed by 710
Abstract
Pollen allergy represents a growing public health concern, yet the role of microplastic pollution in modulating allergen behavior remains largely unresolved. In this study, we investigated interactions between polyethylene terephthalate (PET) microplastics (0.2–12 µm; predominantly 0.4–1 µm) and cedar pollen proteins, with emphasis [...] Read more.
Pollen allergy represents a growing public health concern, yet the role of microplastic pollution in modulating allergen behavior remains largely unresolved. In this study, we investigated interactions between polyethylene terephthalate (PET) microplastics (0.2–12 µm; predominantly 0.4–1 µm) and cedar pollen proteins, with emphasis on the major allergen Cry j 1. Surface charge characterization using the pH drift method revealed two apparent points of zero charge in the acidic (pH 3.0–3.8) and near-neutral (~7.5) regions, indicating surface chemical heterogeneity. Protein adsorption experiments conducted at physiological pH (7.4) showed concentration-dependent and saturable removal of proteins from solution with increasing PET mass and a 3.10-fold preferential enrichment of aromatic-rich protein fractions. Spectroscopic analyses revealed adsorption-induced but non-denaturing structural perturbations, including increased exposure of aromatic residues and partial β-sheet destabilization. Complementary all-atom molecular dynamics simulations showed rapid and stable Cry j 1 adsorption onto PET, anisotropic surface accommodation, modest increases in solvent accessibility, and subtle secondary structure rearrangements without global unfolding. Together, these findings indicate that PET microplastics can selectively bind and structurally modulate pollen allergens in ways that may influence allergen persistence and epitope presentation, with potential implications for IgE-mediated sensitization in polluted environments. Full article
(This article belongs to the Special Issue Advanced Research on Microplastics, Human Exposure and Food Safety)
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24 pages, 3770 KB  
Article
Effects of Polypropylene and Polyethylene Terephthalate Microplastics on Trypsin Structure and Function
by Tamara Lujic, Nikola Gligorijevic, Dragana Stanic-Vucinic, Maja Krstic Ristivojevic, Tamara Mutic, Lukas Wimmer, Lea Ann Dailey and Tanja Cirkovic Velickovic
Int. J. Mol. Sci. 2025, 26(13), 5974; https://doi.org/10.3390/ijms26135974 - 21 Jun 2025
Cited by 5 | Viewed by 2123
Abstract
Ingestion is one of the main exposure routes of humans and animals to microplastics (MPs). During digestion, MPs can interact with both gastrointestinal enzymes and food proteins. This study investigated the adsorption of trypsin onto polypropylene (PP) and polyethylene terephthalate (PET) MPs, the [...] Read more.
Ingestion is one of the main exposure routes of humans and animals to microplastics (MPs). During digestion, MPs can interact with both gastrointestinal enzymes and food proteins. This study investigated the adsorption of trypsin onto polypropylene (PP) and polyethylene terephthalate (PET) MPs, the influence of MPs on trypsin structure and activity, and the in vitro trypsin digestibility of bovine meat extract (BME) sarcoplasmic proteins and BME α-Gal-carrying allergens (α-GalA) in the presence of PP and PET MPs. Trypsin, BME and α-GalA proteins interact with MPs, resulting in the formation of a soft (SC) and hard (HC) corona. This interaction is dynamic, leading to the adsorption and desorption of protein through time. Trypsin adsorption onto MPs results in slight structural changes in the SC and bulk solution, while a trypsin fraction residing in the HC loses most of its specific activity. The presence of MPs slightly slows down the digestibility of proteins with a mass of 38 kDa, while it does not affect the digestion of α-GalA. According to our results, it is unlikely that realistic concentrations of MPs in the intestine would have significant effects on meat extract proteins’ and allergens’ digestibility by trypsin. We confirmed that during trypsin digestion, the corona on PP and PET MP is composed of BME sarcoplasmic proteins and allergenic α-Gal-carrying proteins. Full article
(This article belongs to the Section Biochemistry)
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26 pages, 1741 KB  
Article
Purified Clinoptilolite-Tuff as an Efficient Sorbent for Food-Derived Peanut Allergens
by Carmen Ranftler, Magdalena Zehentner, Andreas Pengl, Andreas Röhrich, Cornelius Tschegg and Dietmar Nagl
Int. J. Mol. Sci. 2024, 25(12), 6510; https://doi.org/10.3390/ijms25126510 - 13 Jun 2024
Cited by 3 | Viewed by 2894
Abstract
The avoidance of allergen intake is crucial for persons affected by peanut allergy; however, the cross-contamination of food is common and leads to unpredictable consequences after the consumption of supposedly “safe” food. The aim of the present study was to eliminate harmful traces [...] Read more.
The avoidance of allergen intake is crucial for persons affected by peanut allergy; however, the cross-contamination of food is common and leads to unpredictable consequences after the consumption of supposedly “safe” food. The aim of the present study was to eliminate harmful traces of peanut allergens from food using purified clinoptilolite-tuff (PCT)—a specially processed zeolite material. Analyses were performed using a peanut ELISA and a Coomassie blue (Bradford) assay. Mimicking conditions of the human gastrointestinal tract demonstrated a higher efficacy of PCT in the intestine (pH 6.8) than in the stomach (pH 1.5). Adsorption rates were fast (<2 min) and indicated high capacities (23 µg and 40 µg per 1 mg of PCT at pH 1.5 and pH 6.8, respectively). Allergenically relevant peanut protein concentrations were sorbed in artificial fluids (32 µg/mL by 4 mg/mL of PCT at pH 1.5 and 80.8 µg/mL by 0.25 mg/mL of PCT at pH 6.8) when imitating a daily dose of 2 g of PCT in an average stomach volume of 500 mL. Experiments focusing on the bioavailability of peanut protein attached to PCT revealed sustained sorption at pH 1.5 and only minor desorption at pH 6.8. Accompanied by gluten, peanut proteins showed competing binding characteristics with PCT. This study therefore demonstrates the potential of PCT in binding relevant quantities of peanut allergens during the digestion of peanut-contaminated food. Full article
(This article belongs to the Section Materials Science)
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11 pages, 2270 KB  
Article
Design of a Facile Antifouling Sensor Based on the Synergy between an Antibody and Phase-Transited BSA
by Siqi Wang, Xinru Dong, Jialu Li, Jialei Liu, Yifei Ruan and Yinqiang Xia
Biosensors 2023, 13(12), 1004; https://doi.org/10.3390/bios13121004 - 29 Nov 2023
Cited by 3 | Viewed by 2842
Abstract
Nonspecific adsorption has always been a critical challenge for sensor detection; thus, an efficient and facile approach for fabricating antifouling sensors is highly desirable. Here, we developed an antifouling coating on sensor surfaces, conveniently made with a simple drip of phase-transited BSA (PTB) [...] Read more.
Nonspecific adsorption has always been a critical challenge for sensor detection; thus, an efficient and facile approach for fabricating antifouling sensors is highly desirable. Here, we developed an antifouling coating on sensor surfaces, conveniently made with a simple drip of phase-transited BSA (PTB) followed by a modification with a peanut allergen antibody, which unexpectedly provides synergistic antifouling properties in sensors. Atomic force microscopy and scanning electron microscopy were used to evaluate the surface evenness. Optimizations in terms of PTB modification time and concentrations were performed using surface plasmon resonance by measuring protein resistance capabilities. Compared to bare Au surfaces, the PTB-modified surfaces exhibited low adsorption against BSA (<10 ng/cm2) and good resistance against lysozyme (Lyz). After immobilizing antibodies, the antifouling performance of the sensor coatings had an obvious enhancement, with almost no BSA adsorption and low lysozyme adsorption. The target recognition was also analyzed to verify the good sensing performance of the antifouling sensor. This understanding of antibody synergy provides suggestions for the development of antifouling sensors. Full article
(This article belongs to the Special Issue New Biosensors and Nanosensors)
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15 pages, 16093 KB  
Article
Evaluation of Plant-Based Byproducts as Green Fining Agents for Precision Winemaking
by Andrea Versari, Arianna Ricci, Annacarla Brioni, Cristian Galaz Torres, Carolina Alejandra Pavez Moreno, Javiera Concha García and Giuseppina Paola Parpinello
Molecules 2022, 27(5), 1671; https://doi.org/10.3390/molecules27051671 - 3 Mar 2022
Cited by 5 | Viewed by 3774
Abstract
Consumers are increasingly looking for foods, including wine, that are free of animal-derived proteins. This study seeks to evaluate patatin, a new, plant-based and allergen-free fining agent, by comparing it with the fining agents polyvinipolypyrrolidone, bovine serum albumin, and methylcellulose. Specifically, its effects [...] Read more.
Consumers are increasingly looking for foods, including wine, that are free of animal-derived proteins. This study seeks to evaluate patatin, a new, plant-based and allergen-free fining agent, by comparing it with the fining agents polyvinipolypyrrolidone, bovine serum albumin, and methylcellulose. Specifically, its effects on the phenolic profile of enological tannins were analyzed with four spectrophotometric assays: OD 280 nm, Folin–Ciocâlteu, Adams–Harbertson, and methylcellulose. In addition, changes in the polyphenol composition of Sangiovese red wine were determined by UV-Vis spectrophotometry and HPLC with adsorption trials, and the solid–liquid interaction in a wine solution was modeled by both Langmuir and Freundlich equations. Our findings highlight the occurrence of systematic proportional error between the selected spectrophotometric assays. As a result, direct comparisons of protein precipitation assays can be made only among results obtained with the same spectrophotometric method. However, it is clear that patatin has an impact on the phenolic profile of Sangiovese red wine: it removes simple phenolics (gallic acid, (+)-catechin, (–)-epicatechin, epicatechin gallate, syringic acid, fertaric acid, coutaric acid, and rutin) as well as both oligomeric and polymeric tannins to different extents. In concentrations of less than 1 g/L, the patatin isotherm showed a linear relation between the equilibrium concentration and the quantity absorbed, obeying the Freundlich model reasonably well (KF 1.46; 1/n 1.07; R2 0.996 with 1/n > 1). Thus, the adsorption process is strongly dependent on the fining dosage. Full article
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16 pages, 4474 KB  
Article
Structural Alterations of Antigens at the Material Interface: An Early Decision Toolbox Facilitating Safe-by-Design Nanovaccine Development
by Litty Johnson, Lorenz Aglas, Wai Tuck Soh, Mark Geppert, Sabine Hofer, Norbert Hofstätter, Peter Briza, Fatima Ferreira, Richard Weiss, Hans Brandstetter, Albert Duschl and Martin Himly
Int. J. Mol. Sci. 2021, 22(19), 10895; https://doi.org/10.3390/ijms221910895 - 8 Oct 2021
Cited by 8 | Viewed by 3750
Abstract
Nanomaterials have found extensive interest in the development of novel vaccines, as adjuvants and/or carriers in vaccination platforms. Conjugation of protein antigens at the particle surface by non-covalent adsorption is the most widely used approach in licensed particulate vaccines. Hence, it is essential [...] Read more.
Nanomaterials have found extensive interest in the development of novel vaccines, as adjuvants and/or carriers in vaccination platforms. Conjugation of protein antigens at the particle surface by non-covalent adsorption is the most widely used approach in licensed particulate vaccines. Hence, it is essential to understand proteins’ structural integrity at the material interface in order to develop safe-by-design nanovaccines. In this study, we utilized two model proteins, the wild-type allergen Bet v 1 and its hypoallergenic fold variant (BM4), to compare SiO2 nanoparticles with Alhydrogel® as particulate systems. A set of biophysical and functional assays including circular dichroism spectroscopy and proteolytic degradation was used to examine the antigens’ structural integrity at the material interface. Conjugation of both biomolecules to the particulate systems decreased their proteolytic stability. However, we observed qualitative and quantitative differences in antigen processing concomitant with differences in their fold stability. These changes further led to an alteration in IgE epitope recognition. Here, we propose a toolbox of biophysical and functional in vitro assays for the suitability assessment of nanomaterials in the early stages of vaccine development. These tools will aid in safe-by-design innovations and allow fine-tuning the properties of nanoparticle candidates to shape a specific immune response. Full article
(This article belongs to the Special Issue Functional Nanomaterials for Healthcare)
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17 pages, 3030 KB  
Article
Cross-Reactive Carbohydrate Determinant in Apis mellifera, Solenopsis invicta and Polybia paulista Venoms: Identification of Allergic Sensitization and Cross-Reactivity
by Débora Moitinho Abram, Luís Gustavo Romani Fernandes, Amilcar Perez-Riverol, Márcia Regina Brochetto-Braga and Ricardo de Lima Zollner
Toxins 2020, 12(10), 649; https://doi.org/10.3390/toxins12100649 - 8 Oct 2020
Cited by 7 | Viewed by 3576
Abstract
Allergic reactions to Hymenoptera venom, which could lead to systemic and even fatal symptoms, is characterized by hypersensitivity reactions mediated by specific IgE (sIgE) driven to venom allergens. Patients multisensitized to sIgE usually recognize more than one allergen in different Hymenoptera species. However, [...] Read more.
Allergic reactions to Hymenoptera venom, which could lead to systemic and even fatal symptoms, is characterized by hypersensitivity reactions mediated by specific IgE (sIgE) driven to venom allergens. Patients multisensitized to sIgE usually recognize more than one allergen in different Hymenoptera species. However, the presence of sIgE directed against Cross-Reactive Carbohydrate Determinant (CCD), which occurs in some allergens from Hymenoptera venom, hampers the identification of the culprit insects. CCD is also present in plants, pollen, fruits, but not in mammals. Bromelain (Brl) extracted from pineapples is a glycoprotein commonly used for reference to sIgE-CCD detection and analysis. In sera of fifty-one Hymenoptera allergic patients with specific IgE ≥ 1.0 KU/L, we assessed by immunoblotting the reactivity of sIgE to the major allergens of Apis mellifera, Polybia paulista and Solenopsis invicta venoms. We also distinguished, using sera adsorption procedures, the cases of CCD cross-reaction using Brl as a marker and inhibitor of CCD epitopes. The presence of reactivity for bromelain (24–28 kDa) was obtained in 43% of the patients, in which 64% presented reactivity for more than one Hymenoptera venom in radioallergosorbent (RAST) tests, and 90% showed reactivity in immunoblot analysis to the major allergens of Apis mellifera, Polybia paulista and Solenopsis invicta venoms. Sera adsorption procedures with Brl lead to a significant reduction in patients’ sera reactivity to the Hymenoptera allergens. Immunoblotting assay using pre- and post-Brl adsorption sera from wasp-allergic patients blotted with non-glycosylated recombinant antigens (rPoly p1, rPoly p5) from Polybia paulista wasp venom showed no change in reactivity pattern of sIgE that recognize allergen peptide epitopes. Our results, using Brl as a marker and CCD inhibitor to test sIgE reactivity, suggest that it could complement diagnostic methods and help to differentiate specific reactivity to allergens’ peptide epitopes from cross-reactivity caused by CCD, which is extremely useful in clinical practice. Full article
(This article belongs to the Section Animal Venoms)
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