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Keywords = acid–base equilibria

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15 pages, 942 KB  
Article
Empowering Environmental Awareness Through Chemistry: A Science–Technology–Society–Environment-Based Approach to Teaching Acid–Base Reactions in 11th-Grade Science
by Gonçalo Gorito and Carla Morais
Educ. Sci. 2026, 16(1), 38; https://doi.org/10.3390/educsci16010038 - 29 Dec 2025
Viewed by 344
Abstract
This study examines the impact of a Science–Technology–Society–Environment (STSE) educational intervention on the teaching of acid–base reactions to 11th-grade students (n = 17). The didactic sequence combined laboratory experiments, real-data analysis, and an interdisciplinary role-play debate, designed to connect chemical concepts with [...] Read more.
This study examines the impact of a Science–Technology–Society–Environment (STSE) educational intervention on the teaching of acid–base reactions to 11th-grade students (n = 17). The didactic sequence combined laboratory experiments, real-data analysis, and an interdisciplinary role-play debate, designed to connect chemical concepts with pressing socio-environmental challenges such as ocean acidification, acid rain, and acid mine drainage. Data collection included a pre- and post-test on environmental awareness and semi-structured interviews, enabling the assessment of both conceptual learning and attitudinal change. Significant conceptual gains were observed, with five of eleven test items reaching a normalized Hake gain ≥ 0.70, alongside increased environmental awareness. Qualitative findings further revealed that students valued the real-world context and interdisciplinary integration, reporting enhanced motivation, civic responsibility, and a more meaningful engagement with science. Overall, the results suggest that STSE-based chemistry instruction not only strengthens students’ understanding of acid–base equilibria but also fosters sustainability competencies essential for responsible and informed citizenship in the 21st century. Full article
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14 pages, 7589 KB  
Article
National-Scale Assessment of Soil pH Change in Chinese Croplands from 1980 to 2018
by Zhong Chen, Yulong Yin, Haiqing Gong, Hongye Wang, Hao Ying, Hongyan Zhang and Zhenling Cui
Agronomy 2025, 15(12), 2775; https://doi.org/10.3390/agronomy15122775 - 30 Nov 2025
Cited by 1 | Viewed by 739
Abstract
Soil acid–base status fundamentally regulates biogeochemical cycling and agroecosystem resilience by controlling nutrient solubility, cation exchange, and redox equilibria. However, the long-term evolution of soil pH and its spatial divergence under intensive agricultural expansion remain poorly quantified. Herein, we integrate three nationwide soil [...] Read more.
Soil acid–base status fundamentally regulates biogeochemical cycling and agroecosystem resilience by controlling nutrient solubility, cation exchange, and redox equilibria. However, the long-term evolution of soil pH and its spatial divergence under intensive agricultural expansion remain poorly quantified. Herein, we integrate three nationwide soil surveys (1980, 2012, 2018) encompassing over 190,000 cropland observations into a harmonized 1 km dataset to reconstruct four decades of soil pH change across China. National mean soil pH declined from 7.1 in 1980 to 6.7 in 2012 and 6.6 in 2018, revealing a sustained acidification trend. Nearly one quarter of neutral soils (pH 6.5–7.5) have shifted into acidic classes (<6.5) since 1980, reflecting widespread depletion of soil buffering capacity under intensive fertilization, high rainfall, and carbonate exhaustion. By integrating current pH conditions with standardized pH change rate, we delineate nine bidirectional soil pH risk zones that capture contrasting acidification and alkalization processes along climatic and edaphic gradients. Acidification-prone zones dominate humid southern croplands, whereas alkalization risk prevails in arid northern regions. Our results provide nationally consistent, grid-level evidence of soil acid–base evolution across nearly four decades, offering a quantitative foundation for region-specific soil management to sustain productivity and mitigate environmental risks. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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18 pages, 4715 KB  
Article
Acid Yellow 9 Azo Dye Gets the Blues: An Optical Spectroscopy and DFT Study of Unusual Photochemistry in Multilayer Films with PAH and Chitosan
by Mikhail Kim, Tristan H. Borchers, Monica Lin and Christopher J. Barrett
Molecules 2025, 30(19), 3850; https://doi.org/10.3390/molecules30193850 - 23 Sep 2025
Viewed by 1538
Abstract
Multilayer and free-standing films self-assembled from water-soluble anionic azo dye acid yellow 9 (AY9) and both poly(allylamine hydrochloride) (PAH) and chitosan (CS) cationic polyelectrolytes were fabricated from water solution using a layer-by-layer (LbL) technique and characterized by UV–Vis and Raman spectroscopy. Observations were [...] Read more.
Multilayer and free-standing films self-assembled from water-soluble anionic azo dye acid yellow 9 (AY9) and both poly(allylamine hydrochloride) (PAH) and chitosan (CS) cationic polyelectrolytes were fabricated from water solution using a layer-by-layer (LbL) technique and characterized by UV–Vis and Raman spectroscopy. Observations were made of a strong, unexpected, and highly unusual colour change from deep red to a distinct dark blue upon exposure of the multilayer films to an acidic environment. The colour change was attributed to the multilayer films only and was not observed either for the polymer or the dye alone, or their mixture in water solution, nor when cast as free-standing films. The significant shift to blue colour of the absorption peaks was quantified with UV–Vis spectroscopy, and a proposed explanation is presented based on density functional theory (DFT) calculations exploring possible and most likely acid-base equilibria configurations of the azo dye that result from being self-assembled. Full article
(This article belongs to the Special Issue Study on Synthesis and Photochemistry of Dyes)
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19 pages, 3832 KB  
Article
Physicochemical Characterization of Kynurenine Pathway Metabolites
by Luca Buzásy, Károly Mazák, Balázs Balogh, Balázs Simon, Anna Vincze, György Tibor Balogh, Tamás Pálla and Arash Mirzahosseini
Antioxidants 2025, 14(5), 589; https://doi.org/10.3390/antiox14050589 - 14 May 2025
Cited by 2 | Viewed by 1875
Abstract
The kynurenine pathway is a significant metabolic route involved in the catabolism of tryptophan, producing various bioactive metabolites with crucial roles as antioxidants in immune regulation and neurobiology. This study investigates the acid-base properties of picolinic acid, kynurenic acid, kynurenine, and 3-hydroxykynurenine, utilizing [...] Read more.
The kynurenine pathway is a significant metabolic route involved in the catabolism of tryptophan, producing various bioactive metabolites with crucial roles as antioxidants in immune regulation and neurobiology. This study investigates the acid-base properties of picolinic acid, kynurenic acid, kynurenine, and 3-hydroxykynurenine, utilizing computational simulations and experimental techniques, including potentiometric and nuclear magnetic resonance titrations. The results reveal distinct pKa values, with kynurenic acid exhibiting a single dissociation step around 2.4, while kynurenine displays three dissociation steps governed by interactions between its functional groups. Additionally, 3-hydroxykynurenine shows overlapping dissociations in two separate pH regions, suggesting nuanced behavior influenced by its molecular structure. The analysis of intramolecular hydrogen bonding in protonation microspecies across varying pH highlights the relevance of the charge state and hydrogen transfer potential of these metabolites in the context of their radical scavenging ability. At physiological pH, most kynurenine and 3-hydroxykynurenine entities exist in zwitterionic form, with hydrogen bonding stabilizing the aromatic amino group, which may significantly influence their interactions with proteins and reactive oxygen species. This study provides critical insights into the acid-base equilibria of kynurenine pathway metabolites. Full article
(This article belongs to the Section Natural and Synthetic Antioxidants)
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19 pages, 1713 KB  
Article
Quantum Chemical Studies on the Prototropic and Acid/Base Equilibria for 2-Aminopyrrole in Vacuo—Role of CH Tautomers in the Design of Strong Brønsted Imino N-Bases
by Ewa Daniela Raczyńska, Pierre-Charles Maria and Jean-François Gal
Molecules 2025, 30(10), 2112; https://doi.org/10.3390/molecules30102112 - 9 May 2025
Cited by 1 | Viewed by 1350
Abstract
In the quest of the pivotal origin of the very strong gas-phase proton basicity for some iminopyrrole derivatives, proposed in the literature on the basis of quantum chemical calculations, the full tautomeric and acid/base equilibria were investigated in vacuo for 2-aminopyrrole exhibiting enamino–imino [...] Read more.
In the quest of the pivotal origin of the very strong gas-phase proton basicity for some iminopyrrole derivatives, proposed in the literature on the basis of quantum chemical calculations, the full tautomeric and acid/base equilibria were investigated in vacuo for 2-aminopyrrole exhibiting enamino–imino tautomerism. Thermochemistry of these processes investigated at the Density Functional Theory (DFT) level indicates a lower stability for the imino than for the enamino tautomers. However, the imino N atom in the imino forms displays an exceptionally high basicity, particularly in the minor and rare tautomers containing at least one tautomeric proton at the pyrrole C atom. This explains why derivatives of CH tautomers (being free of prototropy) display exceptionally high gas-phase proton basicity. As predicted by the Maksić group using quantum chemical methods, these derivatives can be considered as good organic imino N-superbase candidates. Unfortunately, some other structures of iminopyrrole derivatives (proposed by the same group) possess labile protons, and, thus, exhibit prototropy, resulting in the transformation into the more stable but less basic aminopyrrole derivatives under synthesis conditions or acid/base equilibria measurements. Full article
(This article belongs to the Special Issue Quantum Chemical Calculations of Molecular Reaction Processes)
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25 pages, 5180 KB  
Article
Thermodynamics-Guided Neural Network Modeling of a Crystallization Process
by Tae-Hyun Kim, Seon-Hwa Baek, Sung-Jin Yoo, Sung-Kyu Lee and Jeong-Won Kang
Processes 2025, 13(5), 1414; https://doi.org/10.3390/pr13051414 - 6 May 2025
Cited by 1 | Viewed by 1125
Abstract
Melt crystallization is a promising separation technique that produces ultra-high-purity products while consuming less energy and generating lower CO2 emissions than conventional methods. However, accurately modeling melt crystallization is challenging due to significant non-idealities and complex phase equilibria in multicomponent systems. This [...] Read more.
Melt crystallization is a promising separation technique that produces ultra-high-purity products while consuming less energy and generating lower CO2 emissions than conventional methods. However, accurately modeling melt crystallization is challenging due to significant non-idealities and complex phase equilibria in multicomponent systems. This study develops and evaluates two neural network-based surrogate models for acrylic acid melt crystallization: a stand-alone (black-box) model and a thermodynamically guided (hybrid) model. The hybrid model incorporates UNIQUAC-based solid–liquid equilibrium constraints into the learning process. This framework combines first-principles thermodynamic knowledge—particularly activity coefficient calculations and mass balance equations—with multi-output regression to predict key process variables. Both models are rigorously tested for interpolation and extrapolation, with the hybrid approach demonstrating superior accuracy even under operating conditions significantly outside the training domain. Further analysis reveals the critical importance of accurate solid–liquid equilibrium (SLE) data for thermodynamic parameterization. A final case study illustrates how the hybrid approach can quickly explore feasible operating regions while adhering to strict product purity targets. These findings confirm that integrating mechanistic constraints into neural networks significantly enhances predictive accuracy, especially when processes deviate from nominal conditions, providing a practical framework for designing and optimizing industrial-scale melt crystallization processes. Full article
(This article belongs to the Section Separation Processes)
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24 pages, 1331 KB  
Article
Acid-Base Equilibria for Tautomeric Heterocycles in the Gas-Phase: A Case of Uracil
by Ewa Daniela Raczyńska
Symmetry 2025, 17(2), 177; https://doi.org/10.3390/sym17020177 - 24 Jan 2025
Cited by 1 | Viewed by 1542
Abstract
Prototropic conversion (prototropy) for heterocyclic nucleobases was already signaled by Watson and Crick about seventy years ago as one of the reasons for nucleic acids mutations. This isomeric phenomenon has been investigated for neutral derivatives by means of both experimental and theoretical procedures, [...] Read more.
Prototropic conversion (prototropy) for heterocyclic nucleobases was already signaled by Watson and Crick about seventy years ago as one of the reasons for nucleic acids mutations. This isomeric phenomenon has been investigated for neutral derivatives by means of both experimental and theoretical procedures, and their favored tautomers discussed in numerous articles published in the last fifty years. Protonation/deprotonation reactions in the gas phase have also been studied using both quantum-chemical calculations and experimental techniques. Some thermochemical parameters of these processes have been documented. However, prototropy has not always been taken into account in protonation/deprotonation reactions. Most frequently, tautomeric heterocycles have been treated as simple polyfunctional compounds without possible intramolecular protontransfers. Taking into account the lack of data for the complete tautomeric mixtures, quantum-chemical investigations have been undertaken by us about twenty-five years ago for prototropic heterosystems. In this work, the pyrimidine base uracil (U) was chosen. It possesses two identical exo groups (=O/OH) at the 2- and 4-positions, two labile (tautomeric) protons, and five conjugated sites (N1, N3, C5, O7, and O8). Different types of isomerism, prototropy and OH-rotation, were considered for the neutral, protonated, and deprotonated forms. Using quantum-chemical methods, thermochemical stabilities of all possible tautomers-rotamers were examined in vacuo and the potential isomers selected. The selected isomeric mixtures for the neutral and ionic forms were applied for the determination of the thermochemical parameters in the four-step acid/base equilibria: B2− BH BH2 BH3+ BH42+, where BH2 indicates U. For each step, the microscopic (kinetic) and macroscopic (thermodynamic) acid/base parameters were estimated, and sites of the proton gain and proton loss examined. The similarities and differences between the acid/base equilibria for uracil and other pyrimidine nucleobases were discussed. Full article
(This article belongs to the Section Chemistry: Symmetry/Asymmetry)
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17 pages, 1831 KB  
Article
Potential Push-Pull Carbon Superbases Based on Methyl Substitution of Rare Tautomers of Imines
by Ewa Daniela Raczyńska, Jean-François Gal and Pierre-Charles Maria
Molecules 2025, 30(3), 474; https://doi.org/10.3390/molecules30030474 - 22 Jan 2025
Cited by 2 | Viewed by 1068
Abstract
Push-pull imines with strong electron donor group(s) display exceptional basicity in the gas phase. Most of them do not exhibit prototropic tautomerism, and gas-phase acid-base equilibria have been already well described and reviewed. Some questions remain for tautomeric systems, particularly for their uncommon [...] Read more.
Push-pull imines with strong electron donor group(s) display exceptional basicity in the gas phase. Most of them do not exhibit prototropic tautomerism, and gas-phase acid-base equilibria have been already well described and reviewed. Some questions remain for tautomeric systems, particularly for their uncommon forms. As shown by quantum-chemical calculations, some often-neglected tautomers display higher basicity than the thermodynamically favored forms. However, their participation in tautomeric mixtures being in equilibrium is negligible, and their basicity can be impossible to measure in the gas phase by the equilibrium method. During this work, we examined the gas-phase proton basicity for some acyclic and cyclic push-pull organic bases containing the tautomeric amidine or guanidine group. By quantum-chemical calculations, we confirmed the existence of very low amounts of rare tautomeric forms, in particular, those bearing a methylidene (=CH2) group. We also demonstrated that the alkyl derivatives of rare tautomers, being free of prototropy, can be good candidates as very strong push-pull C bases, i.e., bases protonated on the =CH2 group. Full article
(This article belongs to the Section Physical Chemistry)
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11 pages, 1112 KB  
Article
Protolytic Equilibria of Cetirizine in the Presence of Micelle-Forming Surfactants
by Marija Popović-Nikolić, Gordana Popović, Slavica Oljačić and Katarina Nikolić
Organics 2025, 6(1), 2; https://doi.org/10.3390/org6010002 - 2 Jan 2025
Cited by 2 | Viewed by 2249
Abstract
The acid–base equilibria of cetirizine were investigated with and without the presence of differently charged micelle-forming surfactants (anionic, cationic, nonionic). The pKa values were potentiometrically determined at 25 °C and at a constant ionic strength (0.1 M NaCl). Experimental data were [...] Read more.
The acid–base equilibria of cetirizine were investigated with and without the presence of differently charged micelle-forming surfactants (anionic, cationic, nonionic). The pKa values were potentiometrically determined at 25 °C and at a constant ionic strength (0.1 M NaCl). Experimental data were analyzed by applying the computer program Hyperquad 5.2.15. Based on a shift in the ionization constants (∆pKa) in micellar solutions against the pKa values determined in “pure” water under the same conditions, the effects of micelles on the protolytic equilibria of cetirizine were estimated. Applied micelles caused a shift in the protolytic equilibria of all cetirizine ionizable centers, with the piperazine function connected to aliphatic side moiety (∆pKa1 from −0.47 to +1.42), carboxyl group (∆pKa2 from −0.92 to +2.02), and piperazine nitrogen connected to phenyl rings (∆pKa3 from −2.01 to +2.19). Anionic SDS and nonionic Brij 35 micelles caused an increase in the pKa values of the ionizable centers of cetirizine, while a decrease in the pKa values was detected under the influence of cationic CTAB and nonionic TX-100 micelles. The change in the ionization pattern by micelles at pH values with biopharmaceutical significance provides indications of possible interactions of cetirizine with biomolecules of different charge and polarity under physiological conditions. Full article
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22 pages, 4619 KB  
Article
Contribution of Protonation to the Dielectric Relaxation Arising from Bacteriopheophytin Reductions in the Photosynthetic Reaction Centers of Rhodobacter sphaeroides
by Gábor Sipka and Péter Maróti
Biomolecules 2024, 14(11), 1367; https://doi.org/10.3390/biom14111367 - 27 Oct 2024
Viewed by 1461
Abstract
The pH dependence of the free energy level of the flash-induced primary charge pair P+IA was determined by a combination of the results from the indirect charge recombination of P+QA and from the delayed fluorescence [...] Read more.
The pH dependence of the free energy level of the flash-induced primary charge pair P+IA was determined by a combination of the results from the indirect charge recombination of P+QA and from the delayed fluorescence of the excited dimer (P*) in the reaction center of the photosynthetic bacterium Rhodobacter sphaeroides, where the native ubiquinone at the primary quinone binding site QA was replaced by low-potential anthraquinone (AQ) derivatives. The following observations were made: (1) The free energy state of P+IA was pH independent below pH 10 (–370 ± 10 meV relative to that of the excited dimer P*) and showed a remarkable decrease (about 20 meV/pH unit) above pH 10. A part of the dielectric relaxation of the P+IA charge pair that is not insignificant (about 120 meV) should come from protonation-related changes. (2) The single exponential decay character of the kinetics proves that the protonated/unprotonated P+IA and P+QA states are in equilibria and the rate constants of protonation konH +koffH are much larger than those of the charge back reaction kback ~103 s−1. (3) Highly similar pH profiles were measured to determine the free energy states of P+QA and P+IA, indicating that the same acidic cluster at around QB should respond to both anionic species. This was supported by model calculations based on anticooperative proton distribution in the cluster with key residues of GluL212, AspL213, AspM17, and GluH173, and the effect of the polarization of the aqueous phase on electrostatic interactions. The larger distance of IA from the cluster (25.2 Å) compared to that of QA (14.5 Å) is compensated by a smaller effective dielectric constant (6.5 ± 0.5 and 10.0 ± 0.5, respectively). (4) The P* → P+QA and IAQA → IAQA electron transfers are enthalpy-driven reactions with the exemption of very large (>60%) or negligible entropic contributions in cases of substitution by 2,3-dimethyl-AQ or 1-chloro-AQ, respectively. The possible structural consequences are discussed. Full article
(This article belongs to the Special Issue New Insights into the Membranes of Anoxygenic Phototrophic Bacteria)
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21 pages, 4561 KB  
Article
Linoleic Acid Induces Metabolic Reprogramming and Inhibits Oxidative and Inflammatory Effects in Keratinocytes Exposed to UVB Radiation
by Carolina Manosalva, Claudio Bahamonde, Franco Soto, Vicente Leal, César Ojeda, Carmen Cortés, Pablo Alarcón and Rafael A. Burgos
Int. J. Mol. Sci. 2024, 25(19), 10385; https://doi.org/10.3390/ijms251910385 - 26 Sep 2024
Cited by 15 | Viewed by 5509
Abstract
Linoleic acid (LA), the primary ω-6 polyunsaturated fatty acid (PUFA) found in the epidermis, plays a crucial role in preserving the integrity of the skin’s water permeability barrier. Additionally, vegetable oils rich in LA have been shown to notably mitigate ultraviolet (UV) radiation-induced [...] Read more.
Linoleic acid (LA), the primary ω-6 polyunsaturated fatty acid (PUFA) found in the epidermis, plays a crucial role in preserving the integrity of the skin’s water permeability barrier. Additionally, vegetable oils rich in LA have been shown to notably mitigate ultraviolet (UV) radiation-induced effects, including the production of reactive oxygen species (ROS), cellular damage, and skin photoaging. These beneficial effects are primarily ascribed to the LA in these oils. Nonetheless, the precise mechanisms through which LA confers protection against damage induced by exposure to UVB radiation remain unclear. This study aimed to examine whether LA can restore redox and metabolic equilibria and to assess its influence on the inflammatory response triggered by UVB radiation in keratinocytes. Flow cytometry analysis unveiled the capacity of LA to diminish UVB-induced ROS levels in HaCaT cells. GC/MS-based metabolomics highlighted significant metabolic changes, especially in carbohydrate, amino acid, and glutathione (GSH) metabolism, with LA restoring depleted GSH levels post-UVB exposure. LA also upregulated PI3K/Akt-dependent GCLC and GSS expression while downregulating COX-2 expression. These results suggest that LA induces metabolic reprogramming, protecting against UVB-induced oxidative damage by enhancing GSH biosynthesis via PI3K/Akt signaling. Moreover, it suppresses UVB-induced COX-2 expression in HaCaT cells, making LA treatment a promising strategy against UVB-induced oxidative and inflammatory damage. Full article
(This article belongs to the Section Molecular Endocrinology and Metabolism)
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16 pages, 6304 KB  
Article
Effect of Initial Temperature and Pressure on the Explosion Characteristics and Intermediate Reaction Products of Formic Acid Mixtures: A Theoretical Study
by Maria Mitu
Fire 2024, 7(8), 290; https://doi.org/10.3390/fire7080290 - 19 Aug 2024
Cited by 2 | Viewed by 2659
Abstract
Formic acid is a promising candidate fuel that can be produced by reacting renewable hydrogen with carbon dioxide. However, the burning safety characteristics of formic acid–air mixtures have not been fully studied. This paper presents an extensive theoretical study of the adiabatic explosion [...] Read more.
Formic acid is a promising candidate fuel that can be produced by reacting renewable hydrogen with carbon dioxide. However, the burning safety characteristics of formic acid–air mixtures have not been fully studied. This paper presents an extensive theoretical study of the adiabatic explosion pressure of formic acid–air premixed laminar flames at various initial conditions (composition of formic acid: 17–38% volume; initial pressure: 0.1–1.5 bar; initial temperature: 333–500 K), using the GASEQ software package. GASEQ software calculates chemical equilibria based on ideal gas behavior and is based on the hypothesis of adiabatic expansion inside a closed containment that allows ideal expansion. The influence of the initial conditions (pressure, temperature, and concentration) of formic acid–air mixtures on the adiabatic explosion pressures, maximum flame temperature, and peak concentrations of the main reaction intermediates is investigated and discussed. It is found that the adiabatic peak explosion pressure (calculated equilibrium pressure) of the studied concentrations decreases with increasing initial temperature and increases linearly with increasing initial pressure. Full article
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36 pages, 5138 KB  
Review
Strong Bases and beyond: The Prominent Contribution of Neutral Push–Pull Organic Molecules towards Superbases in the Gas Phase
by Ewa Daniela Raczyńska, Jean-François Gal and Pierre-Charles Maria
Int. J. Mol. Sci. 2024, 25(11), 5591; https://doi.org/10.3390/ijms25115591 - 21 May 2024
Cited by 8 | Viewed by 3159
Abstract
In this review, the principles of gas-phase proton basicity measurements and theoretical calculations are recalled as a reminder of how the basicity PA/GB scale, based on Brønsted–Lowry theory, was constructed in the gas-phase (PA—proton affinity and/or GB—gas-phase basicity in the enthalpy and Gibbs [...] Read more.
In this review, the principles of gas-phase proton basicity measurements and theoretical calculations are recalled as a reminder of how the basicity PA/GB scale, based on Brønsted–Lowry theory, was constructed in the gas-phase (PA—proton affinity and/or GB—gas-phase basicity in the enthalpy and Gibbs energy scale, respectively). The origins of exceptionally strong gas-phase basicity of some organic nitrogen bases containing N-sp3 (amines), N-sp2 (imines, amidines, guanidines, polyguanides, phosphazenes), and N-sp (nitriles) are rationalized. In particular, the role of push–pull nitrogen bases in the development of the gas-phase basicity in the superbasicity region is emphasized. Some reasons for the difficulties in measurements for poly-functional nitrogen bases are highlighted. Various structural phenomena being in relation with gas-phase acid–base equilibria that should be considered in quantum-chemical calculations of PA/GB parameters are discussed. The preparation methods for strong organic push–pull bases containing a N-sp2 site of protonation are briefly reviewed. Finally, recent trends in research on neutral organic superbases, leaning toward catalytic and other remarkable applications, are underlined. Full article
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19 pages, 3010 KB  
Article
Lewis Acid-Base Adducts of α-Amino Acid-Derived Silaheterocycles and N-Methylimidazole
by Anne Seidel, Robert Gericke, Beate Kutzner and Jörg Wagler
Molecules 2023, 28(23), 7816; https://doi.org/10.3390/molecules28237816 - 28 Nov 2023
Cited by 3 | Viewed by 1943
Abstract
In chloroform solution, the reaction of bis(tert-butylamino)dimethylsilane ((tBuNH)2SiMe2) and an α-amino acid (α-amino isobutyric acid, H2Aib; D-phenylglycine, H2Phg; L-valine, H2Val) in the presence of N-methylimidazole (NMI) gave [...] Read more.
In chloroform solution, the reaction of bis(tert-butylamino)dimethylsilane ((tBuNH)2SiMe2) and an α-amino acid (α-amino isobutyric acid, H2Aib; D-phenylglycine, H2Phg; L-valine, H2Val) in the presence of N-methylimidazole (NMI) gave rise to the formation of the pentacoordinate silicon complexes (Aib)SiMe2-NMI, (Phg)SiMe2-NMI and (Val)SiMe2-NMI, respectively. Therein, the amino acid building block was a di-anionic bidentate chelator at the silicon atom. In solution, the complexes were involved in rapid coordination–dissociation equilibria between the pentacoordinate Si complex (e.g., (Aib)SiMe2-NMI) and its constituents NMI and a five-membered silaheterocycle (e.g., (Aib)SiMe2), as shown by 29Si NMR spectroscopy. The energetics of the Lewis acid-base adduct formation and the competing solvation of the NMI molecule by chloroform were assessed with the aid of computational methods. In CDCl3 solution, deuteration of the silaheterocycle NH group proceeded rapidly, with more than 50% conversion within two days. Upon cooling to −44 °C, the chloroform solvates of the adducts (Aib)SiMe2-NMI and (Phg)SiMe2-NMI crystallized from their parent solutions and allowed for their single-crystal X-ray diffraction analyses. In both cases, the Si atom was situated in a distorted trigonal bipyramidal coordination sphere with equatorial Si–C bonds and an equatorial Si–N bond (the one of the silaheterocycle). The axial positions were occupied by a carboxylate O atom of the silaheterocycle and the NMI ligand’s donor-N-atom. Full article
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41 pages, 6237 KB  
Review
On Prototropy and Bond Length Alternation in Neutral and Ionized Pyrimidine Bases and Their Model Azines in Vacuo
by Ewa Daniela Raczyńska
Molecules 2023, 28(21), 7282; https://doi.org/10.3390/molecules28217282 - 26 Oct 2023
Cited by 7 | Viewed by 2530
Abstract
In this review, the complete tautomeric equilibria are derived for disubstituted pyrimidine nucleic acid bases starting from phenol, aniline, and their model compounds—monosubstituted aromatic azines. The differences in tautomeric preferences for isolated (gaseous) neutral pyrimidine bases and their model compounds are discussed in [...] Read more.
In this review, the complete tautomeric equilibria are derived for disubstituted pyrimidine nucleic acid bases starting from phenol, aniline, and their model compounds—monosubstituted aromatic azines. The differences in tautomeric preferences for isolated (gaseous) neutral pyrimidine bases and their model compounds are discussed in light of different functional groups, their positions within the six-membered ring, electronic effects, and intramolecular interactions. For the discussion of tautomeric preferences and for the analysis of internal effects, recent quantum-chemical results are taken into account and compared to some experimental ones. For each possible tautomer-rotamer of the title compounds, the bond length alternation, measured by means of the harmonic oscillator model of electron delocalization (HOMED) index, is examined. Significant HOMED similarities exist for mono- and disubstituted derivatives. The lack of parallelism between the geometric (HOMED) and energetic (ΔG) parameters for all possible isomers clearly shows that aromaticity is not the main factor that dictates tautomeric preferences for pyrimidine bases, particularly for uracil and thymine. The effects of one-electron loss (positive ionization) and one-electron gain (negative ionization) on prototropy and bond length alternation are also reviewed for pyrimidine bases and their models. Full article
(This article belongs to the Special Issue Computational and Theoretical Studies on Isomeric Organic Compounds)
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