Search Results (13)

Anthocyanins are responsible for grape (Vitis vinifera L.) skin color. To obtain a more detailed understanding of the anthocyanin regulatory networks across’ the summer and winter seasons in grapes under a double-cropping viticulture system, the transcriptomes of ‘Summer Black’ grapes were analyzed using RNA sequencing. The average daily temperature during the harvest stage in the summer crop, ranging from 26.18 °C to 32.98 °C, was higher than that in the winter crop, ranging from 11.03 °C to 23.90 °C. Grapes from the winter crop accumulated a greater content of anthocyanins than those from the summer crop, peaking in the harvest stage (E-L38) with 207.51 mg·100 g⁻¹. Among them, malvidin-3-O-glucoside (Mv-3-G) had the highest monomer content, accounting for 32%. The content of Cy-3-G during winter increased by 55% compared to summer. KEGG analysis indicated that the flavonoid biosynthesis and circadian rhythm—plant pathways are involved in the regulation of anthocyanin biosynthesis during fruit development. Pearson’s coefficient showed significant positive correlations between anthocyanin content and the VvDFR, VvUFGT, VvOMT, VvMYB, and VvbHLH genes in the winter crop; at full veraison stage, their expressions were 1.34, 1.98, 1.28, 1.17, and 1.34 times greater than in summer, respectively. The higher expression of VvUFGT and VvOMT led to higher contents of Cy-3-G and Mv-3-G in the winter berries, respectively. Full article

In this study, wind speed sensitivity and calibration bias were first determined for Surface Water and Ocean Topography (SWOT) satellite Ka-band Radar Interferometer (KaRIn) Normalized Radar Backscatter Cross Section (NRCS) data at VV and HH polarizations. Here, the calibration bias was estimated by comparing the KaRIn NRCS with collocated simulations from a model developed using Global Precipitation Measurement (GPM) satellite Dual-frequency Precipitation Radar (DPR) data. To recalibrate the bias, the correlation coefficient between the KaRIn data and the simulations was estimated, and the data with the corresponding top 10% correlation coefficients were used to estimate the recalibration coefficients. After recalibration, a Ka-band NRCS model was developed from the KaRIn data to retrieve ocean surface wind speeds. Finally, wind speed retrievals were evaluated using the collocated European Center for Medium-Range Weather Forecasts (ECMWF) reanalysis winds, Haiyang-2C scatterometer (HY2C-SCAT) winds and National Data Buoy Center (NDBC) and Tropical Atmosphere Ocean (TAO) buoy winds. Evaluation results show that the Root Mean Square Error (RMSE) at both polarizations is less than 1.52 m/s, 1.34 m/s and 1.57 m/s, respectively, when compared to ECMWF, HY2C-SCAT and buoy collocated winds. Moreover, both the bias and RMSE were constant with the incidence angles and polarizations. This indicates that the winds from the SWOT KaRIn data are capable of correcting the sea state bias for sea surface height products. Full article

Adequate intake of mineral nutrients and amino acids is essential for nutrition in the Western diet, where deficiencies of minerals such as Zn, Fe, and good quality proteins are highly prevalent in vulnerable populations in Latin America and the Caribbean (LAC). The aim of the present study was to evaluate the mineral and amino acid content of Kurugua (KWF) wholemeal flour and a derived product (9% K w/v, 0.8% chia oil (w/v), and 1% sweetener v/v). Proteins were analyzed by Microkjeldhal, minerals Na, K, P, Ca, Mg, Zn, Cu, Mn, and Fe by AOAC, and amino acid profile by HPLC-DAD methods. KWF presented a high content of Mg and Zn (207.63 ± 5.27 and 15.76 ± 0.04 mg/100 g, respectively). A KWF-based drink provides 5.05 mg Zn/100 g, equivalent to 46% of the recommended daily intake (RDI) in a 200 mL serving of the beverage. Amino acids (glutamic acid + glutamine) and (aspartic acid + asparagine) were the most abundant in KWF (112.2 and 245 mg of aa/g protein, respectively), with 18.0% of total protein. A serving of KWF-based drink contains about 3.02 g of protein and the essential amino acids Hys, Val, Met, Phe, Ile, Leu, and Lys (31.6, 213, 198, 89.3, 186, 3.7, and 194.3 mg AA/200 mL, respectively). The ready-to-drink Kurugua drink takes full advantage of the wholemeal flour of an indigenous fruit such as Kurugua, providing a source of zinc and an adequate amount of essential amino acids and expanding the supply of healthy products within the framework of food safety. Full article

ATP-binding cassette (ABC) transporters are a large class of superfamily involved in a variety of biological processes with multiple functions, including phytohormone transport, heavy metal ion detoxification, and so on. Anthocyanin pigmentation in grapes is a commercially important feature of this superfamily. To elucidate the mechanisms of the VvABC gene at different stages in grape berries, we analyzed and characterized the ABC family in ‘ZhongShan-HongYu’ (ZS-HY) berries using RNA-seq analysis. In this study, a total of 146 VvABC genes were identified by comprehensive bioinformatics analysis, which outlined their gene structure, chromosomal location, conserved domains, phylogenetic relationships, and collinearity analysis. The VvABC family could be divided into eight subfamilies based on the phylogenetic analysis. Fifty-eight VvABC genes were identified from the RNA-seq data, of which 31 belong to the ABCG subfamily, 15 belong to the ABCC subfamily, 8 belong to the ABCB subfamily, 2 belong to the ABCF subfamily, and only 1 belongs to each of the ABCA and ABCD subfamilies. We used qRT-PCR to detect the expression of VvABC genes in different organs and found that it changed significantly in different organs. Phylogenetic analysis showed that genes involved in anthocyanin transport in other species were closely related to members of the ABCC subfamily. Subsequently, analysis of the promoter elements and the protein interactions of the VvABCC genes using RNA-seq was performed. This study has improved our understanding of the functions of the ABC gene family and provided a basis for the role of ABC genes in grape anthocyanin transport. Full article

Anthocyanins are synthesized in the endoplasmic reticulum and then transported to the vacuole in plants. Glutathione S-transferases (GSTs) are thought to play a key role in anthocyanin transport. To clarify the mechanism of GST genes in the accumulation and transport of anthocyanin in the early fruit stage, we analyzed and characterized the GST family in the flesh of ‘Zhongshan-HongYu’ (ZS-HY) based on the transcriptome. In this study, the 92 GST genes identified through a comprehensive bioinformatics analysis were unevenly present in all chromosomes of grapes, except chromosomes 3, 9 and 10. Through the analysis of the chromosomal location, gene structure, conserved domains, phylogenetic relationships and cis-acting elements of GST family genes, the phylogenetic tree divided the GST genes into 9 subfamilies. Eighteen GST genes were screened and identified from grape berries via a transcriptome sequencing analysis, of which 4 belonged to the phi subfamily and 14 to the tau subfamily, and the expression levels of these GST genes were not tissue-specific. The phylogenetic analysis indicated that VvGST4 was closely related to PhAN9 and AtTT19. This study provides a foundation for the analysis of the GST gene family and insight into the roles of GSTs in grape anthocyanin transport. Full article

On 23 November 2021, the Gaofen-3-02 (GF3-02) satellite was successfully launched in the Jiuquan Satellite Launch Center of China. The primary payload is C-band Synthetic Aperture Radar (SAR), with a maximum resolution of 1 m, and includes 12 imaging modes such as Spotlight, Strip, and TOPSAR, which will play an essential role in marine environment monitoring. As an important marine environmental parameter, the wind speed accuracy retrieved by GF3-02 SAR directly reflects its performance and effectiveness as an operational product. Therefore, based on the wind data of buoys of the National Data Buoy Center (NDBC), ECMWF reanalysis V5 (ERA5), and HY-2B Scatterometer (SCA), a preliminary accuracy assessment of the wind speed retrieved by GF3-02 SAR is carried out in this paper. The wind speed retrieval accuracy of GF3-02 SAR in the co-polarization (HH+VV) data under different Geophysical Model Functions (GMFs) is discussed by using 478 level-1A Single Look Complex (SLC) ocean products acquired in Quad-Polarization Strip I (QPSI) and produced by the National Satellite Ocean Application Service (NSOAS) from January to March 2022. The results show that the optimal root mean square errors (RMSE) are 1.40 m/s, 1.18 m/s, and 1.24 m/s for the VV polarization and 1.39 m/s, 1.19 m/s, and 1.52 m/s for the HH polarization compared to the NDBC wind speed, the ERA5 wind speed, and the HY-2B SCA wind speed, respectively. The preliminary results show that GF3-02 SAR has good wind speed retrieval ability and can meet the needs of operational products. Full article

The essential oils (EOs) of Origanum compactum and Satureja montana chemotyped (CT) at carvacrol, two Thymus vulgaris CT at thujanol and thymol, and Hydrolates (Hys) of S. montana and Citrus aurantium var. amara were chosen for studying their bactericidal efficacy against few phytobacterial pathogens. The Minimal Inhibitory Concentration (MIC) and Bactericidal Concentration (MBC) were found by microdilution assay. The essential oils of O. compactum (MBC 0.06% v/v), T. vulgaris CT thymol (MBC 0.06% v/v), and Hy of C. aurantium (MBC 6.25% v/v) resulted in being the most effective against Erwinia amylovora; thus, they were used as starting concentrations for ex vivo assays. Despite the great in vitro effectiveness, the disease incidence and the population dynamic ex vivo assays showed no significant results. On the other hand, EO of O. compactum and Hy of C. aurantium (at 0.03% and 4.5% v/v, respectively) showed resistance induction in tomato plants against Xanthomonas vesicatoria infections; both treatments resulted in approximately 50% protection. In conclusion, EOs and Hys could be promising tools for agricultural defense, but further studies will be necessary to stabilize the EOs emulsions, while Hys application could be an effective method to prevent bacterial diseases when used as resistance inducer by pre-transplantation treatment at roots. Full article

The present work aimed to chemically characterize and evaluate the antiradical power and biological effects of Citrus medica var. sarcodactylus essential oil (EO) and hydrolate (Hy) from exocarp as well as methanol extracts, from both exocarp and mesocarp (EEX and MEX). The whole fresh fruit was also investigated by SPME-GC/MS to describe its volatile composition. EO and Hy were analyzed by GC/MS and HS-GC/MS techniques, respectively. Limonene and γ-terpinene were found to be the most abundant compounds both in the fresh parts of the fruit and in the EO, while α-terpineol and terpinen-4-ol were in the Hy. The extracts were also rich in furan and coumarin derivatives. A good antiradical activity of all samples except Hy was detected both against ABTS·+ than DPPH·, removed up to about 50%. The antibacterial activity against Bacillus cereus and Escherichia coli was evaluated by microwell dilution method to determine MIC and MBC values. EEX and MEX showed efficacy at very high concentrations against both tested bacteria. The MIC value of EO against B. cereus was 0.5% v/v, while Hy was not able to inhibit the bacterial growth at the tested concentrations. Cytotoxicity investigated on the HL60 leukemia cell line by MTT assay provided an EC₅₀ of 1.24% v/v for EO. Interesting activity of Hy was also observed. Full article

In this work, essential oils (EOs) and hydrolates (Hys) of Rosmarinus officinalis L. and Lavandula angustifolia Mill., grown in Tuscany (Italy), were studied to describe their chemical composition and biological activities. The aromatic profile of the EOs liquid phase was carried out by gas chromatography–mass spectrometry (GC–MS), while the volatile composition of vapor phase EOs and Hys was performed by headspace (HS)/GC–MS. The obtained results show that monoterpene hydrocarbons (71.5% and 89.5%) were the main compounds, followed by oxygenated monoterpenes (26.0% and 10.5%) in the liquid and vapor phase of R. officinalis EO, respectively. The oxygenated monoterpenes were the main components of L. angustifolia EO, reaching 86.9% in the liquid phase and 53.7% in the vapor phase. Regarding Hys, they consisted only of oxygenated monoterpenes, and 1,8-cineole (56.2%) and linalool (42.9%), were the main components of R. officinalis and L. officinalis Hys, respectively. Their cytotoxicity was investigated on an SHSY5Y neuroblastoma cell line by thiazolyl blue tetrazolium bromide (MTT) test, showing a notable effect of the EOs with a time-independent manner of activity and half maximal effective concentration (EC₅₀) values quite similar for the two plant species (from 0.05% to 0.06% v/v for the three time points evaluated). A measurable activity of Hys was also obtained although with higher EC₅₀ values. The antibacterial activity against Escherichia coli ATCC^® 25922, Pseudomonas fluorescens ATCC^® 13525, Acinetobacter bohemicus DSM 102855 as Gram-negative bacteria and Kocuria marina DSM 16420, Bacillus cereus ATCC^® 10876 as Gram-positive bacteria, was evaluated by the agar disk-diffusion method and the VPT (vapor phase test) to determinate the MIC (minimal inhibitory concentration) and the MBC (minimal bactericidal concentration) values. Both EOs possessed a high activity against all the bacterial strains with MIC values ranging from 0.19% to 3.13% v/v. Unlike EOs, Hys did not show an inhibition of the bacterial growth at the tested concentrations. Furthermore, antioxidant power was measured by 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt-based (ABTS•+) and the 2,2-diphenyl-1-picrylhydrazyl (DPPH) assays, showing a remarkable ability to reduce radicals by both EOs; Hys were slightly less active. The findings highlighted that R. officinalis and L. angustifolia EOs and Hys have a chemical composition rich in bioactive molecules, which can exert different biological activities. Full article

On the 4th of August 2020, a massive explosion occurred in the harbor area of Beirut, Lebanon, killing more than 100 people and damaging numerous buildings in its proximity. The current article aims to showcase how open access and freely distributed satellite data, such as those of the Copernicus radar and optical sensors, can deliver a damage proxy map of this devastating event. Sentinel-1 radar images acquired just prior (the 24th of July 2020) and after the event (5th of August 2020) were processed and analyzed, indicating areas with significant changes of the VV (vertical transmit, vertical receive) and VH (vertical transmit, horizontal receive) backscattering signal. In addition, an Interferometric Synthetic Aperture Radar (InSAR) analysis was performed for both descending (31st of July 2020 and 6th of August 2020) and ascending (29th of July 2020 and 10th of August 2020) orbits of Sentinel-1 images, indicating relative small ground displacements in the area near the harbor. Moreover, low coherence for these images is mapped around the blast zone. The current study uses the Hybrid Pluggable Processing Pipeline (HyP3) cloud-based system provided by the Alaska Satellite Facility (ASF) for the processing of the radar datasets. In addition, medium-resolution Sentinel-2 optical data were used to support thorough visual inspection and Principal Component Analysis (PCA) the damage in the area. While the overall findings are well aligned with other official reports found on the World Wide Web, which were mainly delivered by international space agencies, those reports were generated after the processing of either optical or radar datasets. In contrast, the current communication showcases how both optical and radar satellite data can be parallel used to map other devastating events. The use of open access and freely distributed Sentinel mission data was found very promising for delivering damage proxies maps after devastating events worldwide. Full article

Phytochrome-interacting factors (PIFs), as the basic helix–loop–helix (bHLH) transcription factors, are the primary signaling partners for phytochromes (PHY) that play a key role in PHY-mediated light signal transduction. At present, there are few studies on PIFs in fruit trees. In order to clarify the status of PIFs in grapevines, we identified members of the grape PIFs family and conducted phylogenetic and expression analysis. We identified PIF1, PIF3, PIF4, and PIF7 in PIFs families of the grapevine (Vitis vinifera L.), which were distributed on four different chromosomes with similar gene structures. Except for the closer relationship with PIF1 of citrus, PIFs of grape were distant from the other fruit species such as apple, pear, peach, and strawberry. The VvPIFs (except VvPIF4) were located in the syntenic block with those from Arabidopsis thaliana, Solanum lycopersicum, or Citrus sinensis. In addition to PIF1, all PIFs in grapevines have conserved active PHYB binding (APB) sequences. VvPIF1 has a conserved PIF1-specific active PHYA binding (APA) sequence, while amino acid mutations occurred in the specific APA sequence in VvPIF3. Interestingly, two specific motifs were found in the PIF4 amino acid sequence. The photoreceptor-related elements in the VvPIFs promoter region were the most abundant. PIF1, LONG HYPOCOTYL 5 (HY5) and PIF3, PIF4, GIBBERELLIC ACID INSENSITIVE 1 (GAI1) may interact with each other and participate together in light signal transduction. The relative expression levels of the VvPIFs showed diverse patterns in the various organs at different developmental stages, of which PIF4 was most highly expressed. Prior to maturation, the expression of PIF4 and PIF7 in the skin of the different cultivars increased, while the expression of all PIFs in the flesh decreased. The transcription level of PIFs in grape leaves was sensitive to changes in lighting and shading. Shading treatment was beneficial for enhancing the transcription level of VvPIFs, but the effect on VvPIF3 and VvPIF4 was time-controlled. We concluded that PIFs in grapevines are both conservative and species-specific. The identification and analysis of grape PIFs could provide a theoretical foundation for the further construction of grape light regulation networks. Full article

Anthocyanins and proanthocyanidins (PAs) are crucial factors that affect the quality of grapes and the making of wine, which were stimulated by various stimuli and environment factors (sugar, hormones, light, and temperature). The aim of the study was to investigate the influence of exogenous 24-Epibrassinolide (EBR) and light on the mechanism of anthocyanins and PAs accumulation in grape berries. Grape clusters were sprayed with EBR (0.4 mg/L) under light and darkness conditions (EBR + L, EBR + D), or sprayed with deionized water under light and darkness conditions as controls (L, D), at the onset of veraison. A large amount of anthocyanins accumulated in the grape skins and was measured under EBR + L and L treatments, whereas EBR + D and D treatments severely suppressed anthocyanin accumulation. This indicated that EBR treatment could produce overlay effects under light, in comparison to that in dark. Real-time quantitative PCR analysis indicated that EBR application up-regulated the expression of genes (VvCHI1, VvCHS2, VvCHS3, VvDFR, VvLDOX, VvMYBA1) under light conditions. Under darkness conditions, only early biosynthetic genes of anthocyanin biosynthesis responded to EBR. Furthermore, we also analyzed the expression levels of the BR-regulated transcription factor VvBZR1 (Brassinazole-resistant 1) and light-regulated transcription factor VvHY5 (Elongated hypocotyl 5). Our results suggested that EBR and light had synergistic effects on the expression of genes in the anthocyanin biosynthesis pathway. Full article

A sensitive, reliable and specific LC-MS-MS method was developed and validated for the identification and quantitation of all-trans retinoic acid (ATRA) in human plasma. Acitretin was used as the internal standard (IS). After liquid-liquid extraction of 500 μL plasma with methyl tert-butyl ether (MTBE), ATRA and the IS were chromatographed on a HyPURITY C18 column (150 mm × 2.1 mm, 5 μm) with the column temperature set at 40 °C. The mobile phase was consisted of 40% phase A (MTBE–methanol–acetic acid, 50:50:0.5, v/v) and 60% phase B (water–methanol–acetic acid, 50:50:0.5, v/v) with a flow rate of 0.3 mL/min. The API 4000 triple quadrupole mass spectrometer was operated in multiple reaction monitoring (MRM) mode via the positive electrospray ionization interface using the transition m/z 301.4 → 123.1 for ATRA and m/z 326.9 → 177.1 for IS, respectively. The calibration curve was linear over the range of 0.45–217.00 ng/mL (r ≥ 0.999) with a lower limit of quantitation (LLOQ) of 0.45 ng/mL. The intra- and inter-day precisions values were below 8% relative standard deviation and the accuracy was from 98.98% to 106.19% in terms of relative error. The validated method was successfully applied in a bioequivalence study of ATRA in Chinese healthy volunteers. Full article