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12 pages, 11494 KB  
Communication
Overexpression of the Halophytic Vacuolar Na+/H+ Antiporter Enhances Salt Tolerance in Arabidopsis thaliana
by Roksana Aftab, Hiromi Suzuki and Yuichi Tada
Plants 2026, 15(12), 1883; https://doi.org/10.3390/plants15121883 - 17 Jun 2026
Viewed by 570
Abstract
The use of genes derived from halophytes represents a promising strategy for enhancing salt tolerance. Among salt tolerance mechanisms, vacuolar Na+/H+ exchangers (NHXs) play a central role in cellular Na+ sequestration in both halophytes and glycophytes. In this study, [...] Read more.
The use of genes derived from halophytes represents a promising strategy for enhancing salt tolerance. Among salt tolerance mechanisms, vacuolar Na+/H+ exchangers (NHXs) play a central role in cellular Na+ sequestration in both halophytes and glycophytes. In this study, we identified the SvNHX2 gene from the halophyte Sporobolus virginicus and characterized its role in salinity tolerance. SvNHX2 expression was strongly induced by salt stress, particularly in shoots in S. virginicus. Arabidopsis thaliana plants overexpressing SvNHX2 exhibited significantly improved growth at the vegetative growth stage under 100 and 125 mM NaCl on agar plates and at the reproductive growth stage under 100 mM NaCl in hydroponic systems, although no clear correlation was observed between transgene expression levels and tolerance. Ion analysis showed that SvNHX2 overexpression increased Na+ accumulation in roots under NaCl stress, suggesting enhanced vacuolar Na+ sequestration, while K+ levels remained comparable to the wild type. These findings indicated that SvNHX2 contributes to salt tolerance primarily by promoting Na+ compartmentalization, and that its capacity is comparable to those of NHX proteins in glycophytes. In this study, we provide additional insights into the function of halophytic NHX and demonstrated that SvNHX2 is a valuable gene for engineering salt-tolerant crops. Full article
(This article belongs to the Special Issue Plant Salt Stress Tolerance: Mechanisms and Applications)
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20 pages, 12660 KB  
Article
Faunal Restoration and Shellfish Farming: An Ecological–Economic Win-Win Framework for Sporobolus alterniflorus Control in Mangrove Habitats
by Dinglin Liu, Pingping Guo, Yufeng Lin, Hongkun Cai, Kaiyuan Zhao, Mao Wang and Wenqing Wang
Land 2026, 15(5), 882; https://doi.org/10.3390/land15050882 - 19 May 2026
Viewed by 386
Abstract
In Luoyuan Bay, China, Sporobolus alterniflorus invasion has hindered mangrove restoration and disrupted faunal communities within mangrove habitats. This study investigated its impact on mollusk, crab, and fish assemblages across mangrove, mudflat, and invaded habitats from 2019 to 2020. Results showed that species [...] Read more.
In Luoyuan Bay, China, Sporobolus alterniflorus invasion has hindered mangrove restoration and disrupted faunal communities within mangrove habitats. This study investigated its impact on mollusk, crab, and fish assemblages across mangrove, mudflat, and invaded habitats from 2019 to 2020. Results showed that species diversity of three assemblages did not differ significantly between invaded and non-invaded mangrove habitats; however, assemblage structure was altered and functional traits declined markedly in invaded areas. Compared with non-invaded mangroves, invaded habitats showed decreases of 81.6% in mollusk density, 50.7% in mollusk biomass, 66.6% in crab density and 84.2% in crab biomass. Dominant fish species (Acanthogobius ommaturus, Liza carinata, Stolephorus chinensis) also exhibited lower body size, total size and biomass in invaded habitats. Given the close dependence of coastal residents on these faunal resources, a socioeconomic analysis of livelihood strategies was conducted, revealing Sinonovacula constricta aquaculture achieved the highest net income-to-investment ratio, 122.7% higher than nearshore fishery and 308.3% higher than shallow-sea oyster cultivation, while professional shellfish farming yielded the highest net income per hectare, 23.6% higher than oyster cultivation. Thus, both forms of shellfish aquaculture provide greater economic returns than other livelihood options. Based on these findings and niche theory, we propose a management framework: after removing S. alterniflorus, plant native mangroves (Kandelia obovata) in mid-to-high intertidal zones and lease lower flats for shellfish farming. This framework has the potential to integrate ecological restoration with local livelihoods and may inform similar efforts in other regions facing biological invasions and restoration challenges. Full article
(This article belongs to the Section Land, Biodiversity, and Human Wellbeing)
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12 pages, 1946 KB  
Article
Beyond Invasion: How Phragmites australis Modifies Soil Architecture and Carbon Storage in Long Island Sound Salt Marshes
by Sharon N. Kahara, Precious F. Attah and Ritwik Negi
Biology 2026, 15(4), 315; https://doi.org/10.3390/biology15040315 - 11 Feb 2026
Viewed by 648
Abstract
Coastal salt marshes are essential for climate change mitigation due to their high carbon storage capacity, which is influenced by soil type, hydrology, and floristic composition. Over the past century, invasive Phragmites australis has displaced native Sporobolus alterniflorus (formerly Spartina alterniflora) across [...] Read more.
Coastal salt marshes are essential for climate change mitigation due to their high carbon storage capacity, which is influenced by soil type, hydrology, and floristic composition. Over the past century, invasive Phragmites australis has displaced native Sporobolus alterniflorus (formerly Spartina alterniflora) across salt marshes on the Long Island Sound, and it is widely hypothesized that its larger biomass and rapid growth enhance soil carbon sequestration. This study tested that hypothesis by comparing total organic carbon stocks and physical soil properties in two southern Connecticut marshes over multiple seasons. Our results show that mean soil bulk density was significantly higher under P. australis than S. alterniflorus at both locations. However, this did not translate to superior carbon storage. Analysis showed a significant seasonal effect but no significant overall difference in median TOC between species, indicating that P. australis is competitive in total mass only due to its higher soil density. Notably, Levene’s test for homogeneity of variance was significant (p = 0.039), revealing that P. australis creates highly heterogeneous “hot spots” of carbon storage compared to the relatively uniform distribution found in native stands. These findings suggest that while P. australis invasion results in a more physically dense and potentially resilient marsh platform—relevant for surviving sea-level rise and filtering nutrient runoff—it may simultaneously compromise the stability and uniformity of regional carbon sinks. Management strategies should consider these tradeoffs when prioritizing the protection of native S. alterniflorus for consistent carbon sequestration. Full article
(This article belongs to the Section Ecology)
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25 pages, 681 KB  
Review
Drought-Resilience in Mexican Drylands: Integrative C4 Grasses and Forage Shrubs
by Ma. Enriqueta Luna-Coronel, Héctor Gutiérrez-Bañuelos, Daniel García-Cervantes, Alejandro Espinoza-Canales, Luis Cuauhtémoc Muñóz-Salas and Francisco Javier Gutiérrez-Piña
Grasses 2026, 5(1), 2; https://doi.org/10.3390/grasses5010002 - 6 Jan 2026
Cited by 1 | Viewed by 1081
Abstract
Grassland-based livestock systems across Mexico’s arid and semi-arid belt are increasingly exposed to drought, degrading forage reliability, and soil function. This review synthesizes evidence on native C4 grasses and forage shrubs as complementary building blocks of drought-resilient swards. We searched Web of Science, [...] Read more.
Grassland-based livestock systems across Mexico’s arid and semi-arid belt are increasingly exposed to drought, degrading forage reliability, and soil function. This review synthesizes evidence on native C4 grasses and forage shrubs as complementary building blocks of drought-resilient swards. We searched Web of Science, Scopus, CAB Abstracts and key grey sources (USDA/NRCS Plant Guides, USFS FEIS, Tropical Forages, SNICS) for 1990–2025 studies in English/Spanish. Dominant native grasses (Bouteloua spp., Hilaria belangeri, Digitaria californica, Trichloris crinita, Sporobolus airoides, Panicum hallii) provide high warm-season digestibility and structural cover via C4 physiology, basal/intercalary meristems, and deep/fibrous roots. Forage shrubs (Atriplex canescens, Desmanthus bicornutus, Leucaena leucocephala, Flourensia cernua, Prosopis spp.) bridge the dry-season protein/energy gap and create “resource islands” that enhance infiltration, provided anti-nutritional risks (mimosine/DHP, tannins, salts/oxalates, terpenoids) are managed by dose and diet mixing. We integrate these findings into a Resistance–Recovery–Persistence framework and translate them into operations: (i) site-matching rules for species/layouts, (ii) PLS (pure live seed)-based seed specifications and establishment protocols, (iii) grazing TIDD (timing–intensity–distribution–duration) with a practical monitoring dashboard (CP targets, stubble/cover thresholds, NDVI/SPEI triggers). Remaining bottlenecks are seed quality/availability and uneven extension; policy alignment on PLS procurement and regional seed increase can accelerate adoption. Mixed native grass–shrub systems are a viable, scalable pathway to strengthening drought resilience in Mexican rangelands. Full article
(This article belongs to the Special Issue Advances in Grazing Management)
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15 pages, 1430 KB  
Article
Development of a Reference Transcriptome and Identification of Differentially Expressed Genes Linked to Salt Stress in Salt Marsh Grass (Sporobolus alterniflorus) along Delaware Coastal Regions
by Antonette Todd, Ketaki Bhide, Rita Hayford, Vasudevan Ayyappan, Mayavan Subramani, Lathadevi Karuna Chintapenta, Jyothi Thimmapuram, Gulnihal Ozbay and Venu (Kal) Kalavacharla
Plants 2024, 13(14), 2008; https://doi.org/10.3390/plants13142008 - 22 Jul 2024
Viewed by 2131
Abstract
Salt marsh grass (Sporobolus alterniflorus) plays a crucial role in Delaware coastal regions by serving as a physical barrier between land and water along the inland bays and beaches. This vegetation helps to stabilize the shoreline and prevent erosion, protecting the [...] Read more.
Salt marsh grass (Sporobolus alterniflorus) plays a crucial role in Delaware coastal regions by serving as a physical barrier between land and water along the inland bays and beaches. This vegetation helps to stabilize the shoreline and prevent erosion, protecting the land from the powerful forces of the waves and tides. In addition to providing a physical barrier, salt marsh grass is responsible for filtering nutrients in the water, offering an environment for aquatic species and presenting a focal point of study for high salt tolerance in plants. As seawater concentrations vary along the Delaware coast from low to medium to high salinity, our study seeks to identify the impact of salt tolerance in marsh grass and to identify genes associated with salt tolerance levels. We developed more than 211,000 next-generation-sequencing (Illumina) transcriptomic reads to create a reference transcriptome from low-, medium-, and high-salinity marsh grass leaf samples collected from the Delaware coastline. Contiguous sequences were annotated based on a homology search using BLASTX against rice (Oryza sativa), foxtail millet (Setaria italica), and non-redundant species within the Viridiplantae database. Additionally, we identified differentially expressed genes related to salinity stress as candidates for salt stress qPCR analysis. The data generated from this study may help to elucidate the genetic signatures and physiological responses of plants to salinity stress, thereby offering valuable insight into the use of innovative approaches for gene expression studies in crops that are less salt tolerant. Full article
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11 pages, 2544 KB  
Article
Functional Trait Responses of C4 Bunchgrasses to Fire Return Intervals in the Semi-Arid Savanna of South Africa
by Mthunzi Mndela, Siphenamhla Moss, Bukho Gusha, Kgabo Humphrey Thamaga, Gbenga Abayomi Afuye, Hazem Ghassan Abdo and Hussein Almohamad
Diversity 2023, 15(12), 1201; https://doi.org/10.3390/d15121201 - 7 Dec 2023
Cited by 8 | Viewed by 2996
Abstract
C4 grasses coevolved with fires, employing specialized adaptive traits to recover from recurrent fires of varying regimes, thereby maintaining plant diversity and plant population stability. However, the knowledge of how C4 bunchgrasses recover from varying fire return intervals (FRIs) is limited. Biomass, tillering, [...] Read more.
C4 grasses coevolved with fires, employing specialized adaptive traits to recover from recurrent fires of varying regimes, thereby maintaining plant diversity and plant population stability. However, the knowledge of how C4 bunchgrasses recover from varying fire return intervals (FRIs) is limited. Biomass, tillering, flowering, and growth-related traits of Digitaria eriantha, Themeda triandra, Sporobolus fimbriatus, and Cymbopogon plurinodis were assessed in 0- (unburned), 1-, 2-, and 4-year FRIs, each applied in two 0.5 ± 0.01 ha plots from 1980–2022 at the University of Fort Hare research farm, South Africa. FRIs and grass species interacted significantly on biomass production, crown size, tiller production, and reproductive tillers, with responses varying interspecifically depending on the FRI. Cymbopogon plurinodis attained higher total biomass in 1-year FRI, whereas T. triandra produced relatively low biomass in all FRIs compared to 0-year FRI. Nonetheless, T. triandra attained nearly two to three-fold more tillers per plant and three to five-fold more reproductive tillers in 2- and 4-year FRIs compared to other FRIs. Similarly, S. fimbriatus had two-fold more reproductive tillers in 2-year FRIs compared to 0- and 1-year FRIs. We deduce that C4 bunchgrasses respond differentially under recurrent fires depending on the fire return interval, with 2- and 4-year FRIs promoting vegetative and sexual regeneration by enhancing tillering and flowering. Full article
(This article belongs to the Section Biodiversity Conservation)
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16 pages, 2166 KB  
Article
Exogenous Nitric Oxide Alleviates Water Deficit and Increases the Seed Production of an Endemic Amazonian Canga Grass
by Daniela Boanares, Cristiane J. Da-Silva, Keila Jamille Alves Costa, Joana Patrícia Pantoja Serrão Filgueira, Marina Ludmila Oliveira Conor Salles, Luiz Palhares Neto, Markus Gastauer, Rafael Valadares, Priscila Sanjuan Medeiros, Silvio Junio Ramos and Cecilio Frois Caldeira
Int. J. Mol. Sci. 2023, 24(23), 16676; https://doi.org/10.3390/ijms242316676 - 23 Nov 2023
Cited by 1 | Viewed by 2270
Abstract
Open pit mining can cause loss in different ecosystems, including damage to habitats of rare and endemic species. Understanding the biology of these species is fundamental for their conservation, and to assist in decision-making. Sporobolus multiramosus is an annual grass endemic to the [...] Read more.
Open pit mining can cause loss in different ecosystems, including damage to habitats of rare and endemic species. Understanding the biology of these species is fundamental for their conservation, and to assist in decision-making. Sporobolus multiramosus is an annual grass endemic to the Amazon canga ecosystems, which comprise rocky outcrop vegetation covering one of the world’s largest iron ore reserves. Here, we evaluated whether nitric oxide aids S. multiramosus in coping with water shortages and examined the physiological processes behind these adaptations. nitric oxide application improved the water status, photosynthetic efficiency, biomass production, and seed production and germination of S. multiramosus under water deficit conditions. These enhancements were accompanied by adjustments in leaf and root anatomy, including changes in stomata density and size and root endodermis thickness and vascular cylinder diameter. Proteomic analysis revealed that nitric oxide promoted the activation of several proteins involved in the response to environmental stress and flower and fruit development. Overall, the results suggest that exogenous nitric oxide has the potential to enhance the growth and productivity of S. multiramosus. Enhancements in seed productivity have significant implications for conservation initiatives and can be applied to seed production areas, particularly for the restoration of native ecosystems. Full article
(This article belongs to the Special Issue Nitric Oxide Signalling in Plants)
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26 pages, 16612 KB  
Article
Estimation of Species-Scale Canopy Chlorophyll Content in Mangroves from UAV and GF-6 Data
by Liangchao Deng, Bowei Chen, Min Yan, Bolin Fu, Zhenyu Yang, Bo Zhang and Li Zhang
Forests 2023, 14(7), 1417; https://doi.org/10.3390/f14071417 - 11 Jul 2023
Cited by 14 | Viewed by 3107
Abstract
The growth of mangroves is inhibited due to environmental degradation, and changes in the growing health of mangrove forests cause changes in internal physicochemical parameters. The canopy chlorophyll content is an important indicator to monitor the health status of mangroves. We study the [...] Read more.
The growth of mangroves is inhibited due to environmental degradation, and changes in the growing health of mangrove forests cause changes in internal physicochemical parameters. The canopy chlorophyll content is an important indicator to monitor the health status of mangroves. We study the effective inversion data sources and methods of mangrove health indicator parameters to monitor the health of mangrove ecosystems in typical areas of Beibu Gulf, Guangxi. In this study, we evaluated the capability of UAV, GF-6 data, and machine learning regression algorithms in estimating mangrove species-scale canopy chlorophyll content (CCC). Effective measures for mangrove pest and disease pressure, Sporobolus alterniflorus invasion, and anthropogenic risk are also explored, which are important for mangrove conservation and restoration. (1) We obtained several feature variables by constructing a combined vegetation index, and the most sensitive band of mangrove CCC was selected by the characteristic variable evaluation, and the CCC model at the mangrove species-scale was evaluated and validated. Through variable preferences, the feature variables with the highest contribution of Avicennia marina, Aegiceras corniculatum, Kandelia candel, and a collection of three categories of species in the UAV data were indices of RI35, MDATT413, RI35, and NDI35. (2) Random Forest, Gradient Boosting Regression Tree, and Extreme Gradient Boosting were evaluated using the root-mean-square error and coefficient of determination accuracy metrics. Extreme Gradient Boosting regression algorithms were evaluated for accuracy. In both UAV data and GF-6, RF achieved optimal results in inverse mangrove Aegiceras corniculatum species CCC, with higher stability and robustness in machine learning regressors. (3) Due to the sparse distribution of Kandelia candel in the study area and the low spatial resolution of the images, there is an increased possibility that individual image elements contain environmental noise, such as soil. Therefore, the level of CCC can effectively reflect the health status of mangroves and further reflect the increased possibility of the study area being exposed to risks, such as degradation. The establishment of the current protected areas and restoration of degraded ecosystems are effective measures to cope with the risks of mangrove pest and disease stress, invasion of Sporobolus alterniflorus, and anthropogenic activities, which are important for the protection and restoration of mangroves. This study provides an important data reference and risk warning for mangrove restoration and conservation. Full article
(This article belongs to the Special Issue Forestry Remote Sensing: Biomass, Changes and Ecology)
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24 pages, 15367 KB  
Article
UAV-Hyperspectral Imaging to Estimate Species Distribution in Salt Marshes: A Case Study in the Cadiz Bay (SW Spain)
by Andrea Celeste Curcio, Luis Barbero and Gloria Peralta
Remote Sens. 2023, 15(5), 1419; https://doi.org/10.3390/rs15051419 - 2 Mar 2023
Cited by 25 | Viewed by 5182
Abstract
Salt marshes are one of the most productive ecosystems and provide numerous ecosystem services. However, they are seriously threatened by human activities and sea level rise. One of the main characteristics of this environment is the distribution of specialized plant species. The environmental [...] Read more.
Salt marshes are one of the most productive ecosystems and provide numerous ecosystem services. However, they are seriously threatened by human activities and sea level rise. One of the main characteristics of this environment is the distribution of specialized plant species. The environmental conditions governing the distribution of this vegetation, as well as its variation over time and space, still need to be better understood. In this way, these ecosystems will be managed and protected more effectively. Low-altitude remote sensing techniques are excellent for rapidly assessing salt marsh vegetation coverage. By applying a high-resolution hyperspectral imaging system onboard a UAV (UAV-HS), this study aims to differentiate between plant species and determine their distribution in salt marshes, using the salt marshes of Cadiz Bay as a case study. Hyperspectral processing techniques were used to find the purest spectral signature of each species. Continuum removal and second derivative transformations of the original spectral signatures highlight species-specific spectral absorption features. Using these methods, it is possible to differentiate salt marsh plant species with adequate precision. The elevation range occupied by these species was also estimated. Two species of Sarcocornia spp. were identified on the Cadiz Bay salt marsh, along with a class for Sporobolus maritimus. An additional class represents the transition areas from low to medium marsh with different proportions of Sarcocornia spp. and S. maritimus. S. maritimus can be successfully distinguished from soil containing microphytobenthos. The final species distribution map has up to 96% accuracy, with 43.5% of the area occupied by medium marsh species (i.e., Sarcocornia spp.) in the 2.30–2.80 m elevation range, a 29% transitional zone covering in 1.91–2.78 m, and 25% covered by S. maritims (1.22–2.35 m). Basing a method to assess the vulnerability of the marsh to SLR scenarios on the relationship between elevation and species distribution would allow prioritizing areas for rehabilitation. UAV-HS techniques have the advantage of being easily customizable and easy to execute (e.g., following extreme events or taking regular measurements). The UAV-HS data is expected to improve our understanding of coastal ecosystem responses, as well as increase our capacity to detect small changes in plant species distribution through monitoring. Full article
(This article belongs to the Special Issue Crops and Vegetation Monitoring with Remote/Proximal Sensing)
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16 pages, 3759 KB  
Review
Remote Sensing and Invasive Plants in Coastal Ecosystems: What We Know So Far and Future Prospects
by Priscila Villalobos Perna, Mirko Di Febbraro, Maria Laura Carranza, Flavio Marzialetti and Michele Innangi
Land 2023, 12(2), 341; https://doi.org/10.3390/land12020341 - 27 Jan 2023
Cited by 26 | Viewed by 4897
Abstract
Coastal environments are highly threatened by invasive alien plants (IAP), and Remote Sensing (RS) may offer a sound support for IAP detection and mapping. There is still a need for an overview of the progress and extent of RS applications on invaded coasts [...] Read more.
Coastal environments are highly threatened by invasive alien plants (IAP), and Remote Sensing (RS) may offer a sound support for IAP detection and mapping. There is still a need for an overview of the progress and extent of RS applications on invaded coasts that can help the development of better RS procedures to support IAP management. We conducted a systematic literature review of 68 research papers implementing, recommending, or discussing RS tools for IAP mapping in coastal environments, published from 2000 to 2021. According to this review, most research was done in China and USA, with Sporobolus (17.3%) being the better studied genus. The number of studies increased at an accelerated rate from 2015 onwards, coinciding with the transition from RS for IAP detection to RS for invasion modeling. The most used platforms in the 2000s were aircraft, with satellites that increased from 2005 and unmanned aerial vehicles after 2014. Frequentist inference was the most adopted classification approach in the 2000s, as machine learning increased after 2009. RS applications vary with coastal ecosystem types and across countries. RS has a huge potential to further improve IAP monitoring. The extension of RS to all coasts of the world requires advanced applications that bring together current and future Earth observation data. Full article
(This article belongs to the Special Issue Protection, Management and Restoration of Coastal Ecosystems)
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19 pages, 9484 KB  
Article
Seasonality and Characterization Mapping of Restored Tidal Marsh by NDVI Imageries Coupling UAVs and Multispectral Camera
by William Nardin, Yuri Taddia, Michela Quitadamo, Iacopo Vona, Corinne Corbau, Giulia Franchi, Lorie W. Staver and Alberto Pellegrinelli
Remote Sens. 2021, 13(21), 4207; https://doi.org/10.3390/rs13214207 - 20 Oct 2021
Cited by 25 | Viewed by 5626
Abstract
Salt marsh evolution is strongly affected by tidal processes and ecology, which regulate sediment accretion and erosional rates. A balance between marsh erosion and deposition in a restored tidal wetland is crucial for analyzing restoration strategies to adopt in a natural context. Here, [...] Read more.
Salt marsh evolution is strongly affected by tidal processes and ecology, which regulate sediment accretion and erosional rates. A balance between marsh erosion and deposition in a restored tidal wetland is crucial for analyzing restoration strategies to adopt in a natural context. Here, we present an integrated approach monitoring salt marsh seasonal changes over several months in a microtidal restored salt marsh of the Paul S. Sarbanes Ecosystem Restoration Project at Poplar Island (MD, USA). The project is undertaken at a restoration site where sediment dredged from the shipping channels in the upper Chesapeake Bay is being used to restore a tidal marsh habitat in mid-Chesapeake Bay. We flew an Unmanned Aerial Vehicle (UAV) with an RGB and a multispectral camera to obtain a high-resolution map of the planimetric position of vegetation and to monitor the health of the marsh vegetation in diverse seasons. Due to its extension of 400 m by 400 m, a total of four flight plans were necessary to cover the entire marsh flying at a 40 m altitude obtaining a 2 cm Ground Sample Distance (GSD). This technique provides reliable results at a very low cost, enabling an accurate assessment of the marsh platforms to be conducted over time, due to both the very high spatial resolution and the precise georeferencing of the images for the comparisons. Our results show seasonal variability in the two dominant species colonizing the low marsh, Spartina alterniflora, and high marsh, Sporobolus pumilus. While the lower marshes showed a higher variability along seasons, the up-land vegetation showed persistent green foliage during cold seasons. Detecting salt marsh evolution and seasonality coupled with field measurements can help to improve the accuracy of hydrodynamic and sediment transport models. Understanding the drivers of salt marsh evolution is vital for informing restoration practices and designs, in order to improve coastal resilience, and develop and coastal management strategies. Full article
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13 pages, 11738 KB  
Article
The Chloroplast Phylogenomics and Systematics of Zoysia (Poaceae)
by Se-Hwan Cheon, Min-Ah Woo, Sangjin Jo, Young-Kee Kim and Ki-Joong Kim
Plants 2021, 10(8), 1517; https://doi.org/10.3390/plants10081517 - 24 Jul 2021
Cited by 12 | Viewed by 3795
Abstract
The genus Zoysia Willd. (Chloridoideae) is widely distributed from the temperate regions of Northeast Asia—including China, Japan, and Korea—to the tropical regions of Southeast Asia. Among these, four species—Zoysia japonica Steud., Zoysia sinica Hance, Zoysia tenuifolia Thiele, and Zoysia macrostachya Franch. & [...] Read more.
The genus Zoysia Willd. (Chloridoideae) is widely distributed from the temperate regions of Northeast Asia—including China, Japan, and Korea—to the tropical regions of Southeast Asia. Among these, four species—Zoysia japonica Steud., Zoysia sinica Hance, Zoysia tenuifolia Thiele, and Zoysia macrostachya Franch. & Sav.—are naturally distributed in the Korean Peninsula. In this study, we report the complete plastome sequences of these Korean Zoysia species (NCBI acc. nos. MF953592, MF967579~MF967581). The length of Zoysia plastomes ranges from 135,854 to 135,904 bp, and the plastomes have a typical quadripartite structure, which consists of a pair of inverted repeat regions (20,962~20,966 bp) separated by a large (81,348~81,392 bp) and a small (12,582~12,586 bp) single-copy region. In terms of gene order and structure, Zoysia plastomes are similar to the typical plastomes of Poaceae. The plastomes encode 110 genes, of which 76 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Fourteen genes contain single introns and one gene has two introns. Three evolutionary hotspot spacer regions—atpB~rbcL, rps16~rps3, and rpl32~trnL-UAG—were recognized among six analyzed Zoysia species. The high divergences in the atpB~rbcL spacer and rpl16~rpl3 region are primarily due to the differences in base substitutions and indels. In contrast, the high divergence between rpl32~trnL-UAG spacers is due to a small inversion with a pair of 22 bp stem and an 11 bp loop. Simple sequence repeats (SSRs) were identified in 59 different locations in Z. japonica, 63 in Z. sinica, 62 in Z. macrostachya, and 63 in Z. tenuifolia plastomes. Phylogenetic analysis showed that the Zoysia (Zoysiinae) forms a monophyletic group, which is sister to Sporobolus (Sporobolinae), with 100% bootstrap support. Within the Zoysia clade, the relationship of (Z. sinica, Z japonica), (Z. tenuifolia, Z. matrella), (Z. macrostachya, Z. macrantha) was suggested. Full article
(This article belongs to the Special Issue Plant Evolution, Systematics, and Chloroplast Genome)
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14 pages, 2262 KB  
Article
Nitrifying Microbes in the Rhizosphere of Perennial Grasses Are Modified by Biological Nitrification Inhibition
by Yi Zhou, Christopher J. Lambrides, Jishun Li, Qili Xu, Ruey Toh, Shenzhong Tian, Peizhi Yang, Hetong Yang, Maarten Ryder and Matthew D. Denton
Microorganisms 2020, 8(11), 1687; https://doi.org/10.3390/microorganisms8111687 - 29 Oct 2020
Cited by 19 | Viewed by 4398
Abstract
Soil nitrification (microbial oxidation of ammonium to nitrate) can lead to nitrogen leaching and environmental pollution. A number of plant species are able to suppress soil nitrifiers by exuding inhibitors from roots, a process called biological nitrification inhibition (BNI). However, the BNI activity [...] Read more.
Soil nitrification (microbial oxidation of ammonium to nitrate) can lead to nitrogen leaching and environmental pollution. A number of plant species are able to suppress soil nitrifiers by exuding inhibitors from roots, a process called biological nitrification inhibition (BNI). However, the BNI activity of perennial grasses in the nutrient-poor soils of Australia and the effects of BNI activity on nitrifying microbes in the rhizosphere microbiome have not been well studied. Here we evaluated the BNI capacity of bermudagrass (Cynodon dactylon L.), St. Augustinegrass (Stenotaphrum secundatum (Walt.) Kuntze), saltwater couch (Sporobolus virginicus), seashore paspalum (Paspalum vaginatum Swartz.), and kikuyu grass (Pennisetum clandestinum) compared with the known positive control, koronivia grass (Brachiaria humidicola). The microbial communities were analysed by sequencing 16S rRNA genes. St. Augustinegrass and bermudagrass showed high BNI activity, about 80 to 90% of koronivia grass. All the three grasses with stronger BNI capacities suppressed the populations of Nitrospira in the rhizosphere, a bacteria genus with a nitrite-oxidizing function, but not all of the potential ammonia-oxidizing archaea. The rhizosphere of saltwater couch and seashore paspalum exerted a weak recruitment effect on the soil microbiome. Our results demonstrate that BNI activity of perennial grasses played a vital role in modulating nitrification-associated microbial populations. Full article
(This article belongs to the Section Plant Microbe Interactions)
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17 pages, 3892 KB  
Article
Na+ Transporter SvHKT1;1 from a Halophytic Turf Grass Is Specifically Upregulated by High Na+ Concentration and Regulates Shoot Na+ Concentration
by Yuki Kawakami, Shahin Imran, Maki Katsuhara and Yuichi Tada
Int. J. Mol. Sci. 2020, 21(17), 6100; https://doi.org/10.3390/ijms21176100 - 24 Aug 2020
Cited by 19 | Viewed by 4178
Abstract
We characterized an Na+ transporter SvHKT1;1 from a halophytic turf grass, Sporobolus virginicus. SvHKT1;1 mediated inward and outward Na+ transport in Xenopus laevis oocytes and did not complement K+ transporter-defective mutant yeast. SvHKT1;1 did not complement athkt1;1 mutant Arabidopsis [...] Read more.
We characterized an Na+ transporter SvHKT1;1 from a halophytic turf grass, Sporobolus virginicus. SvHKT1;1 mediated inward and outward Na+ transport in Xenopus laevis oocytes and did not complement K+ transporter-defective mutant yeast. SvHKT1;1 did not complement athkt1;1 mutant Arabidopsis, suggesting its distinguishable function from other typical HKT1 transporters. The transcript was abundant in the shoots compared with the roots in S. virginicus and was upregulated by severe salt stress (500 mM NaCl), but not by lower stress. SvHKT1;1-expressing Arabidopsis lines showed higher shoot Na+ concentrations and lower salt tolerance than wild type (WT) plants under nonstress and salt stress conditions and showed higher Na+ uptake rate in roots at the early stage of salt treatment. These results suggested that constitutive expression of SvHKT1;1 enhanced Na+ uptake in root epidermal cells, followed by increased Na+ transport to shoots, which led to reduced salt tolerance. However, Na+ concentrations in phloem sap of the SvHKT1;1 lines were higher than those in WT plants under salt stress. Based on this result, together with the induction of the SvHKT1;1 transcription under high salinity stress, it was suggested that SvHKT1;1 plays a role in preventing excess shoot Na+ accumulation in S. virginicus. Full article
(This article belongs to the Special Issue Molecular Aspects of Plant Salinity Stress and Tolerance)
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Article
Comparative Functional Analysis of Class II Potassium Transporters, SvHKT2;1, SvHKT2;2, and HvHKT2;1, on Ionic Transport and Salt Tolerance in Transgenic Arabidopsis
by Yuichi Tada and Aki Ohnuma
Plants 2020, 9(6), 786; https://doi.org/10.3390/plants9060786 - 23 Jun 2020
Cited by 13 | Viewed by 4460
Abstract
Class II high-affinity potassium transporters (HKT2s) mediate Na+–K+ cotransport and Na+/K+ homeostasis under K+-starved or saline conditions. Their functions have been studied in yeast and X. laevis oocytes; however, little is known about their respective [...] Read more.
Class II high-affinity potassium transporters (HKT2s) mediate Na+–K+ cotransport and Na+/K+ homeostasis under K+-starved or saline conditions. Their functions have been studied in yeast and X. laevis oocytes; however, little is known about their respective properties in plant cells. In this study, we characterized the Na+ and K+ transport properties of SvHKT2;1, SvHKT2;2 and HvHKT2;1 in Arabidopsis under different ionic conditions. The differences were detected in shoot K+ accumulation and root K+ uptake under salt stress conditions, K+ accumulation in roots and phloem sap under K+-starved conditions, and shoot and root Na+ accumulation under K+-starved conditions among the HKT2s transgenic lines and WT plants. These results indicate the diverse ionic transport properties of these HKT2s in plant cells, which could not be detected using yeast or X. laevis oocytes. Furthermore, Arabidopsis expressing HKT2s showed reduced salt tolerance, while over-expression of HvHKT2;1 in barley, which has the ability to sequestrate Na+, showed enhanced salt tolerance by accumulating Na+ in the shoots. These results suggest that the coordinated enhancement of Na+ accumulation and sequestration mechanisms in shoots could be a promising strategy to confer salt tolerance to glycophytes. Full article
(This article belongs to the Special Issue 2019 Feature Papers by Plants’ Editorial Board Members)
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