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Keywords = N-trifluoromethyl group

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17 pages, 1721 KB  
Article
Fluorine- and Trifluoromethyl-Substituted Iminopyridinenickel(II) Complexes Immobilized into Fluorotetrasilicic Mica Interlayers as Ethylene Oligomerization Catalysts
by Hideki Kurokawa, Shingo Haruta, Riku Sunagawa and Hitoshi Ogihara
Catalysts 2025, 15(11), 1073; https://doi.org/10.3390/catal15111073 - 13 Nov 2025
Abstract
Heterogeneous catalysts comprising immobilized nickel(II) complexes bearing a fluorine- or trifluoromethyl-substituted iminopyridine ligand (Xn-C6H5–n-N=C (CH3)-C5H5N, X = F or CF3) in fluorotetrasilicic mica interlayers were prepared by reacting [...] Read more.
Heterogeneous catalysts comprising immobilized nickel(II) complexes bearing a fluorine- or trifluoromethyl-substituted iminopyridine ligand (Xn-C6H5–n-N=C (CH3)-C5H5N, X = F or CF3) in fluorotetrasilicic mica interlayers were prepared by reacting Ni2+-exchange fluorotetrasilicic mica with the appropriate ligand. Upon activating the precatalyst with triethylaluminum or triisobutylaluminum, the generated active species showed catalytic activity for ethylene oligomerization, yielding low-molecular-weight polyethylene (PE), ethylene oligomers, and wax-like PE. The oligomer distribution almost agreed with what we expected according to the Schultz–Flory distribution. However, the amount of solid products was much higher than the theoretical value, indicating that at least two active species were formed, i.e., the oligomer and low-molecular-weight PE. The precatalyst with a 2,4-F2C6H3 group on the imino nitrogen atom activated by triethylaluminum showed the highest catalytic activity for ethylene oligomerization (408 g-C2 g-cat−1 h−1), with selectivities to the liquid and solid products of 51.0% and 11.5%, respectively, with the rest of the product corresponding to wax-like PE. Meanwhile, the highest selectivity to the liquid product (66.7% at 233 g-C2 g-cat−1 h−1) was obtained using the precatalyst with a 2-FPh group on the imino nitrogen atom activated by triisobutylaluminum. Full article
(This article belongs to the Special Issue Advances in Group 10(Ni, Pd, Pt...)-Catalyzed Reactions)
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45 pages, 5593 KB  
Review
Synthesis of 2-Oxazolines from N-Allyl and N-Propargyl Amides
by Karolina Bojar, Danuta Branowska and Ewa Wolińska
Molecules 2025, 30(22), 4369; https://doi.org/10.3390/molecules30224369 - 12 Nov 2025
Abstract
2-Oxazolines are five-membered heterocyclic compounds with significant biological properties. They also play an important role in organic synthesis, acting as chiral ligands and protecting groups for hydroxyamino acids and amino alcohols. Poly(2-oxazolines) are known coating materials, for example, in biomedicine. Classic synthetic methods [...] Read more.
2-Oxazolines are five-membered heterocyclic compounds with significant biological properties. They also play an important role in organic synthesis, acting as chiral ligands and protecting groups for hydroxyamino acids and amino alcohols. Poly(2-oxazolines) are known coating materials, for example, in biomedicine. Classic synthetic methods of 2-oxazolines involve a dehydrative cyclisation reaction between amino alcohols and carboxylic acids, acid chlorides, nitriles, imidates, and aldehydes. However, the electrophilic intramolecular cyclization of unsaturated amides is becoming an increasingly important synthetic method for the preparation of 2-oxazolines. This brief review summarizes procedures for synthesizing oxazolines using the electrophilic intramolecular oxidative cyclisation of N-allyl and N-propargyl amides, as published between 2014 and 2024. It covers the synthesis of 5-halomethyl-, 5-trifluoromethyl-, 5-sulfonylmethyl-, 5-sulfenylmethyl-, 5-selenylmethyl-, 5-acetoxymethyl-, 5-hydroxymethyl-, 5-aminomethyl-, 5-alkilo-, and 5-alkylideneoxazolines. Full article
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18 pages, 2608 KB  
Article
Switching N-Alkylation Regioselectivity of Trifluoromethylated Pyrazoles Guided by Functional Group Tuning
by Yulia O. Edilova, Yulia S. Kudyakova, Ekaterina A. Osipova, Pavel A. Slepukhin, Yanina V. Burgart, Victor I. Saloutin and Denis N. Bazhin
Int. J. Mol. Sci. 2025, 26(21), 10335; https://doi.org/10.3390/ijms262110335 - 23 Oct 2025
Viewed by 326
Abstract
The similar properties of the nitrogen atoms in azole ring complicate the regioselective N-functionalization of pyrazoles. This work demonstrates the role of the hydrazone substituent in the control of the alkylation selectivity of (trifluoromethyl)pyrazoles. Reaction conditions for the synthesis of 3- and [...] Read more.
The similar properties of the nitrogen atoms in azole ring complicate the regioselective N-functionalization of pyrazoles. This work demonstrates the role of the hydrazone substituent in the control of the alkylation selectivity of (trifluoromethyl)pyrazoles. Reaction conditions for the synthesis of 3- and 5-(trifluoromethyl)pyrazoles were developed, and all types of regioisomers formed under the alkylation of bis-pyrazolyl NH-ketazine were isolated. The structures of the synthesized compounds were confirmed by NMR spectroscopy and XRD data. Full article
(This article belongs to the Section Biochemistry)
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8 pages, 1323 KB  
Short Note
N-(2-Fluoro-2-propen-1-yl)-5-(trifluoromethyl)-2-pyridinecarboxamide
by Taylor Semeniuk and Jean-Denys Hamel
Molbank 2025, 2025(4), M2078; https://doi.org/10.3390/M2078 - 21 Oct 2025
Viewed by 320
Abstract
Herein, the synthesis and crystallization of the unreported compound N-(2-fluoro-2-propen-1-yl)-5-(trifluoromethyl)-2-pyridinecarboxamide is achieved via amide coupling with a (2-fluoroallyl)ammonium salt. The structural properties are analyzed via single-crystal X-ray crystallography. Hydrogen bonding interactions between the amide groups and pyridine nitrogen atoms create a unique [...] Read more.
Herein, the synthesis and crystallization of the unreported compound N-(2-fluoro-2-propen-1-yl)-5-(trifluoromethyl)-2-pyridinecarboxamide is achieved via amide coupling with a (2-fluoroallyl)ammonium salt. The structural properties are analyzed via single-crystal X-ray crystallography. Hydrogen bonding interactions between the amide groups and pyridine nitrogen atoms create a unique linear array of molecules in the crystal packing diagram. Furthermore, to validate the crystallographic data, the structural features of the compound are evaluated and compared to values reported in the literature. Full article
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29 pages, 7913 KB  
Article
Synthesis, Characterization, and Screening Anticancer—Antibiofilm Activities of Theophylline Derivatives Containing CF3/OCF3 Moiety
by Serpil Demir Düşünceli, Kübra Açıkalın Coşkun, Murat Kaloğlu, Elvan Üstün, Reyhan Çalışkan and Yusuf Tutar
Biology 2025, 14(9), 1180; https://doi.org/10.3390/biology14091180 - 2 Sep 2025
Viewed by 857
Abstract
Background: Theophylline, which is biologically important and found in tea, coffee, and cocoa beans, can be synthesized chemically or by direct extraction and concentration from natural sources. Theophylline derivatives have garnered attention in recent years for their potential therapeutic effects on Mycobacterium tuberculosis [...] Read more.
Background: Theophylline, which is biologically important and found in tea, coffee, and cocoa beans, can be synthesized chemically or by direct extraction and concentration from natural sources. Theophylline derivatives have garnered attention in recent years for their potential therapeutic effects on Mycobacterium tuberculosis, antihistaminic, anti-inflammatory, and anticancer. Also, trifluoromethyl (CF3) group has also been widely used in drug and agrochemical design. Methods: In this study, a series of new theophylline derivatives containing substituted trifluoromethyl and trifluoromethoxy groups were synthesized. The structures of these new compounds were confirmed by NMR, FT-IR, and elemental analyses. Additionally, the anticancer activities of the molecules were analyzed against VEGFR-2, CYP P450, and estrogen receptor by molecular docking method. Furthermore, in vitro biological effects of the compounds were comprehensively evaluated in cancer (A549 and HeLa) and normal (BEAS-2B) cells. Cell viability was assessed by MTT assay, and selectivity index (SI) values were calculated to determine tumor-specific toxicity. Results: N(7)-substituted theophyllines were prepared by the reaction of 1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione (theophylline) and trifluoromethyl substituted benzyl halide compounds. The synthesized N(7)-substituted theophyllines were obtained as white powder in high yield. The structure of synthesized compounds was confirmed by various spectroscopic techniques such as 1H, 13C, 19F NMR, and FT-IR spectroscopy, and elemental analysis. The highest interaction was recorded as −5.69 kcal/mol for 3-CF3 substituted against VEGFR-2 structure while the best binding affinity was determined for 4-OCF3 substituted with −6.69 kcal/mol against Human Cytochrome P450 with in silico analysis. The in vitro anticancer activities of the molecules were also evaluated against A549 and HeLa cells, and displayed considerably higher cytotoxicity with 2-CF3, 3-CF3, and 4-CF3 substituted molecules in Hela and A549 cell line. To elucidate the molecular mechanism, apoptosis-related gene expression changes were analyzed by RT-qPCR in A549 and HeLa cells treated with compound 2-CF3. Significant upregulation of pro-apoptotic markers and downregulation of anti-apoptotic genes were observed. Consistently, ELISA-based quantification confirmed increased protein levels of Caspase-3, BAX, and Cytochrome C, and decreased BCL-2, validating the apoptotic mechanism at the protein level. Also, the antibacterial and antibiofilm activity details of the molecules were evaluated against DNA Gyrase, and SarA crystal structures by molecular docking method. The highest interaction was recorded as −5.56 kcal/mol for 2-CF3 substituted with H-bonds with Asn46, Val71, Asp73, and Thr165 against DNA Gyrase crystal structure while 3-CF3 substituted has the best binding affinity against SarA. The in vitro antimicrobial effects of the molecules were also evaluated. Conclusions: The synthesized molecules may provide insight into the development of potential therapeutic agents to the increasing antimicrobial resistance and biofilm-forming capacity of microorganisms. Additionally, compound 2-CF3 substituted exhibited promising and selective anticancer activity through apoptosis induction, supported by gene and protein level evidence. Full article
(This article belongs to the Topic Advances in Anti-Cancer Drugs: 2nd Edition)
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12 pages, 2329 KB  
Article
Comparative Analysis of the Substituent Effects on the Supramolecular Structure of N′-(4-Methyl-2-nitrophenyl)benzohydrazide and N′-(2-Nitro-(4-trifluoromethyl)phenyl)benzohydrazide)
by Christos P. Constantinides, Syed Raza, Fadwat Bazzi, Nisreen Sharara and Simona Marincean
Crystals 2025, 15(8), 732; https://doi.org/10.3390/cryst15080732 - 19 Aug 2025
Viewed by 957
Abstract
N′-Phenylbenzohydrazides are valuable precursors for air- and moisture-stable Blatter radicals, with applications in magnetism and spintronics. This study presents the single-crystal X-ray structures of N′-(4-methyl-2-nitrophenyl)benzohydrazide (I) and N′-(2-nitro-(4-trifluoromethyl)phenyl)benzohydrazide (II), highlighting the influence of substituents on supramolecular [...] Read more.
N′-Phenylbenzohydrazides are valuable precursors for air- and moisture-stable Blatter radicals, with applications in magnetism and spintronics. This study presents the single-crystal X-ray structures of N′-(4-methyl-2-nitrophenyl)benzohydrazide (I) and N′-(2-nitro-(4-trifluoromethyl)phenyl)benzohydrazide (II), highlighting the influence of substituents on supramolecular arrangement. Compounds I and II are found to crystallize within the monoclinic crystal system, with the space groups I2/a and P21/n, respectively, with centrosymmetric, one-dimensional columnar packing driven by π-π stacking. In I, π-π dimers form between benzoyl rings (3.018 Å), with additional stacking between aryls (3.408 Å) of neighboring dimers. In II, alternating benzoyl and aryl rings stack with interplanar distances of 2.681 and 2.713 Å. Bifurcated intra- and intermolecular hydrogen bonds (1.938–2.478 Å) further stabilize the packing. Compound II exhibits inter-stack F···F contacts (2.924 Å), attributed to steric effects. The trifluoromethyl group enhances N′NCO-NO2 conjugation, resulting in a near-parallel arrangement of aromatic rings and planar geometry at the N′ nitrogen. In contrast, compound I shows reduced conjugation, leading to pyramidalization at the N′ nitrogen and increased hydrazide bond flexibility, as seen in the 56° angle between aromatic rings. Full article
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19 pages, 974 KB  
Article
Design, Synthesis and Antiplasmodial Activities of a Library of Fluorine-Based 3-Benzylmenadiones
by Matthieu Roignant, Jimmy Richard, Maxime Donzel, Matthias Rottmann, Pascal Mäser and Elisabeth Davioud-Charvet
Molecules 2025, 30(11), 2446; https://doi.org/10.3390/molecules30112446 - 3 Jun 2025
Viewed by 875
Abstract
Plasmodione is a potent early antiplasmodial compound. A metabolic study on mice treated with plasmodione revealed that 6-hydroxy–plasmodione was the main metabolite eliminated in the urine of treated mice. To block the metabolic pathway in the host, the introduction of fluorine at C-6 [...] Read more.
Plasmodione is a potent early antiplasmodial compound. A metabolic study on mice treated with plasmodione revealed that 6-hydroxy–plasmodione was the main metabolite eliminated in the urine of treated mice. To block the metabolic pathway in the host, the introduction of fluorine at C-6 of the 3-benzylmenadione core was applied and showed potent antiplasmodial activity similar to that of the plasmodione analogue in vitro. In this work, a library of 38 6-fluoro-3-benzylmenadione analogues (a series) was constructed by incorporating structurally diverse groups in place of the 4-(trifluoromethyl) substituent present in the antiplasmodial plasmodione, via three synthetic routes. All new compounds were tested against the P. falciparum NF54 strain and for cytotoxicity with the rat L6 line. With a fluorine atom at C-6, A-a-21 was revealed to be the only compound from the a series, superior to the 6-H- analogue from the b series, with an IC50 value of 70 nM versus 200 nM. Then, five other fluorine-based 3-benzylmenadiones, in which the fluorine was introduced in various positions of the 3-benzylmenadione core, were synthetized to assist our understanding of the impact of fluorine on antiplasmodial potencies in vitro; in particular, the aim here was to compare the effects of human serum and P. berghei species in these drug screens. This was also conducted in vivo with the P. berghei-infected mouse model. In the P. berghei species assay, PD and the 4′-fluoro-3′-trifluoromethyl-benzylmenadione A-b-9 exhibited a similar antiplasmodial behavior toward P. falciparum versus P. berghei. In the human serum versus Albumax assays, only the 6-fluoro–plasmodione showed a lower shift factor between Albumax assays and human serum conditions, suggesting a lower protein binding for the 6-F-PD compared to plasmodione or A-b-9. In vivo, 6-fluoro–plasmodione proved to be the most potent 3-benzylmenadione, reducing parasitemia by 50% after oral administration at 50 mg/kg. Full article
(This article belongs to the Special Issue Synthesis of Bioactive Compounds, 3rd Edition)
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16 pages, 1654 KB  
Article
Copper(II)-Catalyzed Direct C3 Chalcogenylation of Indoles
by Liuyan Pan, Shengwei Chen, Dongfang Wu, Jian Shao, Xiaofeng Bao and Gong-Qing Liu
Molecules 2025, 30(9), 1870; https://doi.org/10.3390/molecules30091870 - 22 Apr 2025
Viewed by 1036
Abstract
3-Chalcogenylindoles serve as crucial building blocks in organic synthesis and pharmaceutical chemistry. Herein, we describe a simple and general synthesis of 3-chalcogenylindoles through the direct C–H chalcogenation of indoles using N-selenophthalimide and N-sulfenylsuccinimide as chalcogenation reagents in the presence of CuBr [...] Read more.
3-Chalcogenylindoles serve as crucial building blocks in organic synthesis and pharmaceutical chemistry. Herein, we describe a simple and general synthesis of 3-chalcogenylindoles through the direct C–H chalcogenation of indoles using N-selenophthalimide and N-sulfenylsuccinimide as chalcogenation reagents in the presence of CuBr2 as the catalyst. The reactions were carried out in CH2Cl2 at room temperature under an air atmosphere with a low loading of catalyst, and a wide range of 3-selenylindoles and 3-thioindoles were obtained in good yields. Various functionalities, namely, methyl, methoxy, halo, ester, cyano, trifluoromethyl, and formyl groups on indoles, have shown amenability to the developed reaction. A mechanism involving the activation of the chalcogenation agent through CuBr2 coordination with the amide carbonyl group is proposed. Full article
(This article belongs to the Section Organic Chemistry)
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36 pages, 13267 KB  
Article
Synthesis, Antiproliferative Activity, and ADME Profiling of Novel Racemic and Optically Pure Aryl-Substituted Purines and Purine Bioisosteres
by Martina Piškor, Astrid Milić, Sanja Koštrun, Maja Majerić Elenkov, Petra Grbčić, Sandra Kraljević Pavelić, Krešimir Pavelić and Silvana Raić-Malić
Biomolecules 2025, 15(3), 351; https://doi.org/10.3390/biom15030351 - 28 Feb 2025
Viewed by 1407
Abstract
The aim of this study was to synthesize new racemic and optically pure aryl-substituted purine bioisosteres using ultrasound-assisted Cu(I)-catalyzed Huisgen 1,3-dipolar cycloaddition. Regioselective synthesis of α-azido alcohols was applied to afford heterocycles with a 2-hydroxyeth-1-yl linker. Catalytic asymmetric synthesis using halohydrin dehalogenase in [...] Read more.
The aim of this study was to synthesize new racemic and optically pure aryl-substituted purine bioisosteres using ultrasound-assisted Cu(I)-catalyzed Huisgen 1,3-dipolar cycloaddition. Regioselective synthesis of α-azido alcohols was applied to afford heterocycles with a 2-hydroxyeth-1-yl linker. Catalytic asymmetric synthesis using halohydrin dehalogenase in the ring-opening of epoxides gave enantioenriched azido alcohols, which subsequently afforded R- and S-enantiomers of purine and pyrrolo[2,3-d]pyrimidines with a 1-hydroxyeth-2-yl linker. The newly synthesized compounds were evaluated in vitro for their antiproliferative activity against four malignant tumor cell lines. The influence of regioisomerism and the stereochemistry of the hydroxyethyl group, as well as a N-heterocyclic scaffold linked to the aryl moiety on cytostatic activity was evaluated. Of all the compounds tested, purine 40a and pyrrolo[2,3-d]pyrimidine 45a derivatives with p-trifluoromethyl-substituted aryl connected to 1,2,3-triazole via a 2-hydroxyeth-1-yl spacer showed promising submicromolar antiproliferative activity. In addition, compound 45a exhibited selectivity towards the tumor cell line, with a selectivity index (SI) of 40, moderate clearance, and good membrane permeability. Full article
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22 pages, 2471 KB  
Article
Stereoselective Synthesis and Antimicrobial Studies of Allo-Gibberic Acid-Based 2,4-Diaminopyrimidine Chimeras
by Dima Depp, Noémi Regina Sebők, András Szekeres and Zsolt Szakonyi
Pharmaceuticals 2025, 18(2), 168; https://doi.org/10.3390/ph18020168 - 26 Jan 2025
Viewed by 2025
Abstract
Background: Gibberellins (GAs) are a family of tetracyclic ent-kaurenoid diterpenes found widely in several commonly used plants. Besides agricultural applications, gibberellins play an important role in the synthesis of bioactive compounds, especially those with antiproliferative and antibacterial activity. Methods: A [...] Read more.
Background: Gibberellins (GAs) are a family of tetracyclic ent-kaurenoid diterpenes found widely in several commonly used plants. Besides agricultural applications, gibberellins play an important role in the synthesis of bioactive compounds, especially those with antiproliferative and antibacterial activity. Methods: A series of gibberellic acid-based 2,4-diaminopyrimidines was designed and synthesized from commercially available gibberellic acid. The antimicrobial activity of the prepared compounds was also explored in B. subtilis, S. aureus, E. coli, and P. aeruginosa bacteria, as well as in C. krusei and C. albicans fungi. Results: The treatment of gibberellic acid with hydrochloric acid under reflux conditions resulted in aromatization followed by rearrangement to form allo-gibberic acid. The key intermediate azido alcohol was prepared according to the literature methods. The second key intermediate azidotriol was synthesized by the stereoselective dihydroxylation of the allylic function by the osmium (VIII)-tetroxide/NMO system. Starting from azide intermediates, click reactions were also carried out with 4-monoamino- and 2,4-diaminopyrimidines functionalized with the N-propargyl group. The new chimeric compounds, coupled with gibberellins thus obtained, were characterized by 1D- and 2D-NMR techniques and HRMS measurements. While the 4-monoamino-substituted derivatives exhibited only weak antibacterial activity, they demonstrated significant antifungal effectiveness against C. krusei. In general, 5-chloro-substituted pyrimidine derivatives displayed more consistent biological activities compared to their 5-fluoro counterparts, with the exception of one derivative, which showed acceptable activity against both C. krusei and C. albicans. The two derivatives featuring 5-chloro and 2-((4-(trifluoromethyl)phenyl)amino substituents proved to be highly effective against P. aeruginosa, making them promising candidates for further research. Aiming to elucidate the molecular interactions between the active compounds and their potential targets, molecular docking studies were conducted using AutoDock Vina 1.1.2. involving the most active compounds against P. aeruginosa.Conclusions: The biological effects of 2-monoamino or 2,4-diamino substitution as well as the effect of chloro or fluoro substitution at position 5 of the pyrimidine ring combined with the allo-gibberic acid moiety were determined. Compounds with selective antibacterial activity against P. aeruginosa as well as selective antifungal activity against C. krusei and C. albicans fungi were identified. Full article
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20 pages, 9784 KB  
Article
Transparent Poly(amide-imide)s with Low Coefficient of Thermal Expansion from Trifluoromethylated Trimellitic Anhydride
by Seong Jong Kim, SeongUk Jeong, Taejoon Byun, Jun Sung Kim, Haeshin Lee and Sang Youl Kim
Polymers 2025, 17(3), 309; https://doi.org/10.3390/polym17030309 - 24 Jan 2025
Cited by 1 | Viewed by 1556
Abstract
Making transparent aromatic polymers with high Tg and low thermal expansion behavior, like glass, is challenging. We report transparent and soluble poly(amide-imide)s (PAIs) with high dimensional stability synthesized from the new monomer, trifluoromethylated trimellitic anhydride. Insertion of trifluoromethyl (CF3) groups [...] Read more.
Making transparent aromatic polymers with high Tg and low thermal expansion behavior, like glass, is challenging. We report transparent and soluble poly(amide-imide)s (PAIs) with high dimensional stability synthesized from the new monomer, trifluoromethylated trimellitic anhydride. Insertion of trifluoromethyl (CF3) groups into polymer chains enhanced solubility and the optical properties of polymers without sacrificing high thermal stability. Model reactions were utilized to study how the CF3 group in trimellitic anhydride affects the polymerization reaction with aromatic diamine monomers, and a series of new PAIs were synthesized. All the polymers were soluble in polar organic solvents and can be solution-cast into nearly colorless and flexible freestanding films. The obtained PAI films possessed high thermal stability (Td5: 437–452 °C in N2) and high transparency (84~87% transmittance at 550 nm). Interestingly, PAIs prepared in this study exhibited high thermodimensional stability with low CTE values from 9 to 26 ppm/°C. The transparent poly(amide-imide) film with low CTE value finds its application in display and optical devices that require flexible and transparent form factors. Full article
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19 pages, 740 KB  
Article
Synthesis and Antiviral Evaluation of 5-(4-Aryl-1,3-butadiyn-1-yl)-uridines and Their Phosphoramidate Pronucleotides
by Evan Saillard, Otmane Bourzikat, Koffi Assa, Vincent Roy and Luigi A. Agrofoglio
Molecules 2025, 30(1), 96; https://doi.org/10.3390/molecules30010096 - 29 Dec 2024
Viewed by 1751
Abstract
The emergence of RNA viruses driven by global population growth and international trade highlights the urgent need for effective antiviral agents that can inhibit viral replication. Nucleoside analogs, which mimic natural nucleotides, have shown promise in targeting RNA-dependent RNA polymerases (RdRps). Starting from [...] Read more.
The emergence of RNA viruses driven by global population growth and international trade highlights the urgent need for effective antiviral agents that can inhibit viral replication. Nucleoside analogs, which mimic natural nucleotides, have shown promise in targeting RNA-dependent RNA polymerases (RdRps). Starting from protected 5-iodouridine, we report the synthesis of hitherto unknown C5-substituted-(1,3-diyne)-uridines nucleosides and their phosphoramidate prodrugs. The modifications at C5 include 4-(trifluoromethyl)benzene (a), 4-pentyl-benzene (b), 3,5-dimethoxy-benzene (c), 4-(trifluoromethoxy)benzene (d), 3-aniline (e), 4-pyridine (f), 3-thiophene (g), C6H13 (h), 2-pyrimidine (i), cyclopropyl (j), and phenyl (k) groups. These compounds were synthesized using Sonogashira palladium-catalyzed reactions and nickel–copper-catalyzed C-H activation between various alkynes, yielding between 25% and 67%. The antiviral activities of obtained compounds were measured through HTS against RNA viruses including influenza H1N1 and H3N2, human respiratory syncytial virus (RSV), SARS-CoV-2, Zika, hepatitis C virus (HCV), Hepatitis E virus (HEV), as well as against coronavirus (HCoV-229E). Unfortunately, none of them showed promising antiviral activity, with less than 85% inhibition observed in the cell viability screening of infected cells. Full article
(This article belongs to the Special Issue Bioorganic Chemistry in Europe)
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18 pages, 2114 KB  
Article
Synthesis of Oxazoles Containing CF3-Substituted Alcohol Unit via Tandem Cycloisomerization/Hydroxyalkylation from N-Propargylamides with Trifluoropyruvates
by Juan-Juan Gao, Long-Hui Wu, Shu-Qin Yu, Xue Zhu, Yu Zeng, Kai Yang and Zhao-Yang Wang
Molecules 2024, 29(24), 5848; https://doi.org/10.3390/molecules29245848 - 11 Dec 2024
Cited by 2 | Viewed by 3324
Abstract
Oxazoles are important five-membered heterocycles that contain both nitrogen and oxygen atoms. Due to their wide range of biological activities, many oxazoles demonstrate potential for extensive application in various fields, including medicinal chemistry. Trifluoromethyl carbinol, an important pharmacophore, contains both trifluoromethyl and hydroxyl [...] Read more.
Oxazoles are important five-membered heterocycles that contain both nitrogen and oxygen atoms. Due to their wide range of biological activities, many oxazoles demonstrate potential for extensive application in various fields, including medicinal chemistry. Trifluoromethyl carbinol, an important pharmacophore, contains both trifluoromethyl and hydroxyl groups and is common in molecules with important biological activities. Constructing oxazoles that contain a trifluoromethyl carbinol unit is undoubtedly important and valuable for expanding the chemical space in drug discovery. In this study, a simple and efficient method was developed for the synthesis of oxazoles containing a CF3-substituted alcohol unit via the tandem cycloisomerization/hydroxyalkylation of N-propargylamides with trifluoropyruvates through a rational Lewis acid catalytic mechanism. This Zn(OTf)2-catalyzed synthetic protocol is operationally simple and provides a series of oxazoles in moderate to good yields. The protocol demonstrates broad substrate scope, high functional group tolerance, and high atom economy and can achieve gram-level reactions, indicating the strong possibility of its practical application. Full article
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20 pages, 976 KB  
Article
Benzo[d]oxazoles from Anilides by N-Deprotonation–O-SNAr Cyclization
by Nash E. Nevels, Luke Subera and Richard A. Bunce
Molecules 2024, 29(18), 4322; https://doi.org/10.3390/molecules29184322 - 12 Sep 2024
Cited by 2 | Viewed by 1734
Abstract
A synthesis of benzo[d]oxazoles by an N-deprotonation–O-SNAr cyclization sequence from anilide precursors is reported. Anilides derived from 2-fluorobenzaldehydes, activated toward SNAr ring closure by C5 electron-withdrawing groups, were prepared and subjected to deprotonation–cyclization using [...] Read more.
A synthesis of benzo[d]oxazoles by an N-deprotonation–O-SNAr cyclization sequence from anilide precursors is reported. Anilides derived from 2-fluorobenzaldehydes, activated toward SNAr ring closure by C5 electron-withdrawing groups, were prepared and subjected to deprotonation–cyclization using 2 equiv. of K2CO3 in anhydrous DMF. Following deprotonation at nitrogen, the delocalized anion cyclized from the amide oxygen to give high yields of benzo[d]oxazoles. The temperature required for the cyclization of benzanilides correlated with the potency of the C5 activating group on the SNAr acceptor ring with nitro (most potent) reacting at 90 °C (1 h), cyano reacting at 115 °C (1 h), methoxycarbonyl reacting at 120 °C (2 h), and trifluoromethyl (least potent) reacting at 130 °C (3 h). Acetanilides were more difficult to cyclize but generally required 4–6 h at these same temperatures for completion. Product purification was accomplished by recrystallization or chromatography. Full article
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18 pages, 2650 KB  
Article
Novel Copper (II) Complexes with Fluorine-Containing Reduced Schiff Base Ligands Showing Marked Cytotoxicity in the HepG2 Cancer Cell Line
by Bianka Oboňová, Jindra Valentová, Miroslava Litecká, Ľudmila Pašková, Jana Hricovíniová, Andrea Bilková, František Bilka, Branislav Horváth and Ladislav Habala
Int. J. Mol. Sci. 2024, 25(17), 9166; https://doi.org/10.3390/ijms25179166 - 23 Aug 2024
Cited by 5 | Viewed by 1999
Abstract
Several novel copper (II) complexes of reduced Schiff bases containing fluoride substituents were prepared and structurally characterized by single-crystal X-ray diffraction. The complexes exhibited diverse structures, with the central atom in distorted tetrahedral geometry. The biological effects of the products were evaluated, specifically [...] Read more.
Several novel copper (II) complexes of reduced Schiff bases containing fluoride substituents were prepared and structurally characterized by single-crystal X-ray diffraction. The complexes exhibited diverse structures, with the central atom in distorted tetrahedral geometry. The biological effects of the products were evaluated, specifically their cytotoxicity, antimicrobial, and antiurease activities, as well as affinity for albumin (BSA) and DNA (ct-DNA). The complexes showed marked cytotoxic activities in the HepG2 hepatocellular carcinoma cell line, considerably higher than the standard cisplatin. The cytotoxicity depended significantly on the substitution pattern. The best activity was observed in the complex with a trifluoromethyl group in position 4 of the benzene ring—the dichloro[(±)-trans-N,N′-bis-(4-trifluoromethylbenzyl)-cyclohexane-1,2-diamine]copper (II) complex, whose activity (IC50 28.7 μM) was higher than that of the free ligand and markedly better than the activity of the standard cisplatin (IC50 336.8 μM). The same complex also showed the highest antimicrobial effect in vitro. The affinity of the complexes towards bovine serum albumin (BSA) and calf thymus DNA (ct-DNA) was established as well, indicating only marginal differences between the complexes. In addition, all complexes were shown to be excellent inhibitors of the enzyme urease, with the IC50 values in the lower micromolar region. Full article
(This article belongs to the Special Issue Novel Metal Complexes for Biomedical Applications)
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