Search Results (55)

Bradysia difformis Frey (Diptera: Sciaridae) is a fungus gnat that poses a significant threat to greenhouse cultures, and is attracted to soils devoid of peat. Fungal strains from the German Collection of Microorganisms and Cell Culture (DSMZ), such as Beauveria bassiana, Metarhizium flavoviride, Mucor hiemalis, and Niesslia tinuis, as well as Serendipita indica, were screened for entomopathogenic activity against B. difformis and their capacity to colonize Petunia hybrida cv. “Mitchell” and Ocimum basilicum plants. The survival rates of Bradysia difformis (three instar larvae) treated with Metarhizium flavoviride were 45.33% at 14 days following inoculation with 1 × 10⁶ spores/mL of each fungal strain, when compared to others. We concluded that the fungal strain M. flavoviride could serve as an entomopathogenic fungus with the highest virulence against B. difformis larvae. Although M. flavoviride did not show a beneficial effect as an endophyte, interestingly, the strain Niesslia tinuis exhibited plant growth benefits in Petunia hybrida cv. “Mitchell” by enhancing its shoot length up to 13.18 ± 0.72 cm, whereas the control treatment had a shoot length up to 10.68 ± 0.39. Enzymatic assays confirmed the ability of M. flavoviride to produce cuticle-degrading enzymes such as chitinase and protease. Together, these findings highlight the potential of EMPF—particularly M. flavoviride—as a sustainable biocontrol tool well-suited for peat-free horticultural systems, offering an eco-friendly alternative to chemical insecticides where fungus gnat pressure is typically high. Full article

Lycoriella ingenua (Dufour) is a major pest in mushroom facilities in Serbia and worldwide. The study aimed to determine the virulence (in vitro) and effectiveness (in vivo) of three Serbian native populations of entomopathogenic nematodes (EPNs) Steinernema feltiae (Filipjev), P9, K2, and ZŠT, compared to a commercial population of S. feltiae against L. ingenua, and their impact on mushroom yield. In vitro bioassays showed that seven days after exposure to a series of nematode suspensions (IJ cm⁻²), two of the three native (P9 and K2) populations and the commercial population of S. feltiae caused significant mortality of L₄ instar larvae of L. ingenua. The following LC_50s were estimated: 18.47, 15.77, and 11.48 IJ cm⁻² for P9, K2, and the commercial populations, respectively. These populations were further used for in vivo bioassays, where their IJs were applied as drench treatment twice (at the rate of 75 IJ cm⁻²) during casing time and seven days later. Control of L. ingenua larvae with the commercial population of S. feltiae was 85%, while the effectiveness of the native populations was 70%. The lack of adequate pest control measures emphasizes a need to promote local EPNs as biologically based and ecotoxicologically safe products. Full article

The substrate for button mushroom (Agaricus bisporus) cultivation includes a highly complex microbiome. The aim of the study was to evaluate ecological interactions (synergistic, antagonistic, or additive) between a commercial population of the entomopathogenic nematode Steinernema feltiae (EPN) and beneficial microorganisms, bacterium Bacillus amyloliquefaciens B-241 (BA) or actinobacterium Streptomyces flavovirens A06 (SF). Their relationships were evaluated in efficacy against the pathogenic fungus Trichoderma aggressivum and the fungus gnat Lycoriella ingenua. Moreover, their impact on mushroom yield was estimated. The synergy factor was calculated as the ratio of observed to expected values regarding their efficacy against T. aggressivum/L. ingenua and influence on mushroom production. Additive relationships in efficacy against T. aggressivum were observed between EPN and BA or SF. As for the impact on yield, synergistic interactions were indicated between each beneficial microorganism and EPN. Considering suppression of L. ingenua, a mild antagonistic reaction between EPN and each beneficial microorganism was observed in plots without T. aggressivum and additive in plots inoculated with the pathogenic fungus, although high efficacy was achieved in all combinations (>80%). Tested native strains of both beneficial microorganisms could be combined with the commercial EPN strain for successful biological pest and disease control in mushroom production. Full article

A new extant genus of Keroplatidae (Diptera: Bibionomorpha), Davimacrocera gen. nov., is described in this paper, which includes two new species, Davimacrocera davidi sp. nov. (Brunei, type species of the genus) and D. taiwanensis sp. nov. (Taiwan, China). Its relationships to other extant genera and possible phylogenetic position are briefly discussed, including a comparison with the fossil genus Burmacrocera Cockerell, 1917 from the mid-Cretaceous amber of Myanmar. The identity of Burmacrocera remains unclear, pending further studies of Keroplatidae in Burmese amber. Full article

Background: General control nonderepressible 5 (Gcn5) is a lysine acetyltransferase (KAT) that is evolutionarily conserved across eukaryotes, with two homologs (Kat2a and Kat2b) identified in humans and one (Gcn5) in Drosophila. Gcn5 contains a P300/CBP-associated factor (PCAF) domain, a Gcn5-N-acetyltransferase (GNAT) domain, and a Bromodomain, allowing it to regulate gene expression through the acetylation of both histone and non-histone proteins. In Drosophila, Gcn5 is crucial for embryonic development, with maternal Gcn5 supporting early development. However, the functional mechanisms of Gcn5 after the depletion of maternal deposits remain unclear. Methods: Our study employed the Gal4/UAS-RNAi system to achieve whole-body or heart-specific Gcn5 knockdown in Drosophila and selected 96-hour-old surviving larvae for transcriptomic and metabolomic analyses. Results: Omics results revealed that Gcn5 knockdown significantly impacts various metabolic pathways, as well as lysosomes, non-homologous end-joining, Toll and Imd signaling pathways, and circadian rhythms, among others. Furthermore, defects in chitin synthesis may be associated with impaired pupation. Additionally, heart-specific Gcn5 knockdown affected cardiac physiology but appeared to have a potential protective effect against age-related cardiac decline. Conclusions: These findings deepen our understanding of Gcn5’s roles in Drosophila development and provide valuable insights for developing Gcn5-targeted therapies, particularly considering its involvement in various human diseases. Full article

Achromatopsia is the most common cone dysfunction syndrome, affecting 1 in 30,000 people. It is an autosomal recessive disorder with a heterogeneous genetic background with variants reported in CNGA3, CNGB3, GNAT2, PDE6C, PDE6H, and ATF6. Up to 90% of achromatopsia patients harbour mutations in CNGA3 or CNB3, which encode for the alpha and beta subunits of the cone cyclic nucleotide-gated (CNG) channel in cone-specific phototransduction. The condition presents at birth or early infancy with poor visual acuity, nystagmus, photophobia, and colour vision loss in all axes. Multimodal retinal imaging has provided insightful information to characterise achromatopsia patients based on their genotype. There is no FDA-approved treatment for achromatopsia; however, studies have reported several preclinical gene therapies with anatomical and functional improvements reported in vivo. There are currently five gene therapy clinical trials registered for human patients at the phase I/II stage and for CNGA3 or CNGB3 causing achromatopsia. This review aims to discuss the genetics of achromatopsia, genotypic and phenotypic correlations in multimodal retinal imaging, and the developments and challenges in gene therapy clinical trials. Full article

The Brucella type IV secretion system (T4SS) can promote the intracellular survival and reproduction of Brucella. T4SS secretes effector proteins to act on cellular signaling pathways to inhibit the host’s innate immune response and cause a chronic, persistent Brucella infection. Brucella can survive in host cells for a long time by inhibiting macrophage apoptosis and avoiding immune recognition. The effector protein, BspF, secreted by T4SS, can regulate host secretory transport and accelerate the intracellular replication of Brucella. BspF has an acetyltransferase domain of the GNAT (GCN5-related N-acetyltransferases) family, and in our previous crotonylation proteomics data, we have found that BspF has crotonyl transferase activity and crotonylation regulation of host cell protein in the proteomics data. Here, we found that BspF attenuates the crotonylation modification of the interacting protein p53, which reduces the p53 expression through the GNAT domain. BspF can inhibit the transcription and protein expression of downstream apoptotic genes, thereby inhibiting host cell apoptosis. Additionally, the Brucella ΔbspF mutant stain promotes apoptosis and reduces the survival rate of Brucella in the cells. In conclusion, we identified that the T4SS effector protein BspF can regulate host cell apoptosis to assist Brucella in its long-term survival by attenuating crotonylation modification of p53 and decreasing p53 expression. Our findings reveal a unique mechanism of elucidating how Brucella regulates host cell apoptosis and promotes its proliferation through the secretion of effector proteins. Full article

On the territory of Ukraine during the field seasons 2015–2022, we collected eight Sciara species—S. analis Schiner, 1864, S. flavimana Zetterstedt, 1851, S. hebes (Loew, 1869), S. helvola Winnertz, 1867, S. hemerobioides (Scopoli, 1763), S. humeralis Zetterstedt, 1851, S. incerta Winnertz, 1867 and S. ruficauda Meigen, 1818. All specimens are kept in the collections of the Schmalhausen Institute of Zoology NAS of Ukraine (SIZK). According to the results of our research, the four species S. flavimana, S. hebes, S. helvola and S. incerta are being registered for the first time in Ukraine. New localities are given for S. analis, S. hemerobioides, S. humeralis and S. ruficauda. The distribution, morphological peculiarities, ecology and phenology of registered species are also briefly discussed. A key to 12 European Sciara species is given. Full article

Fungus gnats (Sciaridae) are one of the most devastating pests on mushroom farms. Generally, they are controlled using relatively inefficient physical means, like sticky or pheromone traps, or with chemical pesticides. Here, we have proposed an integrated fungus gnat control system combining a UV-A LED source at 365 nm and a high-power laser diode at 445 nm. The 365 nm UV-A LED serves a light trap, since previous studies have concluded that fungus gnats show maximum attraction in the range of 365–390 nm. The UV-A LED is also modulated at different frequencies, and the response of the gnats corresponding to these different frequencies was observed. We utilized an Arduino Uno microcontroller to run the integrated device, and a BASLER USB camera was used to capture the images. Our experiments indicated that a frequency of 40 Hz is the optimal choice for attracting the gnats most rapidly. Within 20 s of exposure, the UV-A LED operated at 40 Hz was found to trap approximately 80% of the gnats. In a restricted trapping zone measuring 2.5 × 2.5 × 3 cm³, our integrated module, which includes a 40 Hz modulated UV-A LED and a laser, resulted in a survival rate of only 50% for the total number of gnats. This outcome was accomplished through periodic 200 ms long exposures, amounting to a total duration of 2 min for a group of 100 gnats. Full article

Polyamines are simple yet critical molecules with diverse roles in numerous pathogenic and non-pathogenic organisms. Regulating polyamine concentrations affects the transcription and translation of genes and proteins important for cell growth, stress, and toxicity. One way polyamine concentrations are maintained within the cell is via spermidine/spermine N-acetyltransferases (SSATs) that acetylate intracellular polyamines so they can be exported. The bacterial SpeG enzyme is an SSAT that exhibits a unique dodecameric structure and allosteric site compared to other SSATs that have been previously characterized. While its overall 3D structure is conserved, its presence and role in different bacterial pathogens are inconsistent. For example, not all bacteria have speG encoded in their genomes; in some bacteria, the speG gene is present but has become silenced, and in other bacteria, it has been acquired on mobile genetic elements. The latter is the case for methicillin-resistant Staphylococcus aureus (MRSA) USA300, where it appears to aid pathogenesis. To gain a greater understanding of the structure/function relationship of SpeG from the MRSA USA300 strain (SaSpeG), we determined its X-ray crystal structure in the presence and absence of spermine. Additionally, we showed the oligomeric state of SaSpeG is dynamic, and its homogeneity is affected by polyamines and AcCoA. Enzyme kinetic assays showed that pre-incubation with polyamines significantly affected the positive cooperativity toward spermine and spermidine and the catalytic efficiency of the enzyme. Furthermore, we showed bacterial SpeG enzymes do not have equivalent capabilities to acetylate aminopropyl versus aminbutyl ends of spermidine. Overall, this study provides new insight that will assist in understanding the SpeG enzyme and its role in pathogenic and non-pathogenic bacteria at a molecular level. Full article

Achromatopsia (ACHM) is a congenital cone photoreceptor disorder characterized by reduced visual acuity, nystagmus, photophobia, and very poor or absent color vision. Pathogenic variants in six genes encoding proteins composing the cone phototransduction cascade (CNGA3, CNGB3, PDE6C, PDE6H, GNAT2) and of the unfolded protein response (ATF6) have been related to ACHM cases, while CNGA3 and CNGB3 alone are responsible for most cases. Herein, we provide a clinical and molecular overview of 42 Brazilian patients from 38 families affected with ACHM related to biallelic pathogenic variants in the CNGA3 and CNGB3 genes. Patients’ genotype and phenotype were retrospectively evaluated. The majority of CNGA3 variants were missense, and the most prevalent CNGB3 variant was c.1148delC (p.Thr383Ilefs*13), resulting in a frameshift and premature stop codon, which is compatible with previous publications in the literature. A novel variant c.1893T>A (p.Tyr631*) in the CNGB3 gene is reported for the first time in this study. A great variability in morphologic findings was observed in our patients, although no consistent correlation with age and disease stage in OCT foveal morphology was found. The better understanding of the genetic variants landscape in the Brazilian population will help in the diagnosis of this disease. Full article

Achromatopsia is a rare congenital condition with cone photoreceptor dysfunction causing color blindness, reduced vision, nystagmus and photophobia. New treatments are being developed, but the current evidence is still conflicting regarding possible progression over time, and there is no clear genotype-phenotype correlation. This natural history study aimed to further explore the course of disease and potential clinical differences between various genotypes. The retrospective design allowed for the study of a large cohort with a long follow-up. Patients were identified from the Danish national registries. If not already available, genetic analysis was offered to the patient. Clinical data from 1945–2022 were retrieved from medical records and included best-corrected visual acuity (BCVA), color vision, refractive error, nystagmus, visual fields and fundoscopic findings. We identified variants believed to be disease causing in five of the known achromatopsia genes: CNGA3; CNGB3; GNAT2; PDE6C and PDE6H; and novel variants were identified in CNGB3 and PDE6C. Progressive deterioration of BCVA only attributable to achromatopsia was found in three of 58 patients. Progressive phenotype was seen with variants in CNGB3 and PDE6C. The results indicate that myopia could be more frequently occurring with variants in GNAT2, PDE6C and PDE6H and support the evidence that achromatopsia is a predominantly stationary condition with respect to BCVA. Although a clear genotype-phenotype correlation can still not be concluded, there may be differences in phenotypical characteristics with variants in different genes. Full article

This multicenter study aimed to characterize Korean patients with achromatopsia. The patients’ genotypes and phenotypes were retrospectively evaluated. Twenty-one patients (with a mean age at the baseline of 10.9 years) were enrolled and followed up for a mean of 7.3 years. A targeted gene panel or exome sequencing was performed. The pathogenic variants of the four genes and their frequencies were identified. CNGA3 and PDE6C were equally the most prevalent genes: CNGA3 (N = 8, 38.1%), PDE6C (N = 8, 38.1%), CNGB3 (N = 3, 14.3%), and GNAT2 (N = 2, 9.5%). The degree of functional and structural defects varied among the patients. The patients’ age exhibited no significant correlation with structural defects. During the follow-up, the visual acuity and retinal thickness did not change significantly. In CNGA3-achromatopsia patients, a proportion of patients with a normal foveal ellipsoid zone on the OCT was significantly higher than that of patients with other causative genes (62.5% vs. 16.7%; p = 0.023). In PDE6C-achromatopsia patients, the same proportion was significantly lower than that of patients with other causative genes (0% vs. 58.3%; p = 0.003). Korean patients with achromatopsia showed similar clinical features but a higher prevalence of PDE6C variants than those of other ethnic groups. The retinal phenotypes of the PDE6C variants were more likely to be worse than those of other genes. Full article

The genus Spinopygina gen. nov. (type species Camptochaeta uniceps Hippa & Vilkamaa, 1994) from western North America is described. The genus includes the following eight species: Spinopygina acerfalx sp. nov.; S. aurifera sp. nov.; S. camura sp. nov.; S. edura sp. nov.; S. peltata sp. nov.; S. plena sp. nov.; S. quadracantha sp. nov.; and S. uniceps (Hippa & Vilkamaa, 1994) comb. nov., transferred from Corynoptera Winnertz. The new species are described and Spinopygina uniceps is re-diagnosed. The species are keyed and illustrated. In the maximum-likelihood phylogenetic hypothesis based on four gene fragments (28S, 18S, 16S and COI), Spinopygina gen. nov. appears as the sister group of Claustropyga Hippa, Vilkamaa & Mohrig, 2003. In the same analysis, a remarkable, undescribed species is placed within Camptochaeta Hippa & Vilkamaa clade. Full article

Post-translational modifications of chromatin structure by histone acetyltransferase (HATs) play a pivotal role in the regulation of gene expression and diverse biological processes. However, the function of GNAT family HATs, especially Elp3, in the opportunistic human pathogenic fungus Aspergillus fumigatus is largely unknown. To investigate the roles of the GNAT family HATs Elp3 and GcnE in the A. fumigatus, we have generated and characterized individual null Δelp3 and ΔgcnE mutants. The radial growth of fungal colonies was significantly decreased by the loss of elp3 or gcnE, and the number of asexual spores (conidia) in the ΔgcnE mutant was significantly reduced. Moreover, the mRNA levels of the key asexual development regulators were also significantly low in the ΔgcnE mutant compared to wild type (WT). Whereas both the Δelp3 and ΔgcnE mutants were markedly impaired in the formation of adherent biofilms, the ΔgcnE mutant showed a complete loss of surface structure and of intercellular matrix. The ΔgcnE mutant responded differently to oxidative stressors and showed significant susceptibility to triazole antifungal agents. Furthermore, Elp3 and GcnE function oppositely in the production of secondary metabolites, and the ΔgcnE mutant showed attenuated virulence. In conclusion, Elp3 and GcnE are associated with diverse biological processes and can be potential targets for controlling the pathogenic fungus. Full article