Search Results (11,165)

The Florida softshell turtle, Apalone ferox, is considered common and found in many different types of freshwater habitats throughout its range. However, despite its prevalence where it occurs, little is understood about the species’ life history and population dynamics due to difficulties with capture and long-term marking. Building on a foundational study of the Florida softshell turtle at Wekiwa Springs State Park (WSSP) from 2007 to 2012, we present findings from an extended 16-year mark–recapture study spanning from 2007 to 2023. A total of 31 sampling events were conducted with a median of two capture events per year. Sampling events were spread over a median of 5 days each year (range, 2–11 days), with a total of 88 capture days. One hundred and twenty individual A. ferox were captured over 225 encounters. We estimated an average population size of 135.6 individuals using an annual Schumacher–Eschmeyer ratio estimator. Using a state-space Jolly–Seber model, we estimated that 204 individuals entered the population over the 16 years (the superpopulation), while the average current population size was 40 individuals. The median survival probability was 0.884 but the median detection probability was 0.10, reinforcing the perceived difficulty with capturing A. ferox. The continued influx of new juveniles, recapture of these individuals as adults, and strong female bias support the possibility that the WSSP and Rock Springs greater ecosystem functions as a potential nursery habitat for the Florida softshell. Though population estimates dropped 20% following a two-year sampling gap owing to the COVID-19 pandemic, the population is currently growing slowly and highlights the value of continued, long-term monitoring of elusive freshwater turtle species. Full article

The large yellow croaker (Larimichthys crocea) is susceptible to microbial contamination during storage due to its high protein and moisture contents. This study was designed to find a new way to reduce bacteria in large yellow croakers by combining slightly acidic electrolyzed water (SAEW) with nano-bubble (NB) technology. Exploring the effects of available chlorine concentration (ACC), processing time, and water temperature on the bacteria reduction effect of the SAEW-NB treatment for large yellow croakers. Also, the effects of the SAEW-NB combined treatment on sensory evaluation, total viable counts (TVCs), total volatile basic nitrogen (TVB-N), texture, taste profile, and volatile flavor compounds of large yellow croakers were analyzed during the storage period at 4 °C. The results show that the SAEW-NB treatment achieved significantly enhanced microbial reduction compared to individual treatments. Under the conditions of a 4 °C water temperature, 40 mg/L ACC, and 15 min treatment, the SAEW-NB treatment inhibited the increases in physical and chemical indexes such as TVC and TVB-N, maintained the fish texture, and delayed the production of off-flavor volatiles such as aldehydes, alcohols, esters, and ketones, compared with the control group (CG) during storage at 4 °C. In conclusion, the SAEW-NB treatment could better retard fish spoilage, extending the shelf life by approximately 2 days. It might be a promising new industrial approach for large yellow croakers’ storage. Full article

Macrobrachium nipponense represents a commercial decapod species that predominantly inhabits freshwater ecosystems or environments with low salinity. However, the species exhibits normal survival and reproductive capacity in natural aquatic habitats with salinity levels up to 10 parts per thousand (ppt). The present study aimed to elucidate the molecular mechanisms underlying salinity acclimation in M. nipponense by investigating alterations in oxidative stress, morphological adaptations, and hepatopancreatic gene expression profiles following exposure to a salinity level of 10 ppt. The present study demonstrates that glutathione peroxidase and Na⁺/K⁺-ATPase play critical roles in mitigating oxidative stress induced by elevated salinity in M. nipponense. Furthermore, histological analysis revealed distinct pathological alterations in the hepatopancreas of M. nipponense following 7-day salinity exposure, including basement-membrane disruption, luminal expansion, vacuolization, and a marked reduction in storage cells. Transcriptomic profiling of M. nipponense hepatopancreas suggested coordinated activation of both immune (lysosome and protein processing in endoplasmic reticulum pathways) and energy (pyruvate metabolism, glycolysis/gluconeogenesis, and citrate cycle) metabolic processes during salinity acclimation in M. nipponense. Quantitative real-time PCR validation confirmed the reliability of RNA-seq data. This study provides molecular insights into the salinity adaptation mechanisms in M. nipponense, offering potential applications for improving cultivation practices in brackish water environments. Full article

As a semi-pelagic fish with commercial value, Mediterranean horse mackerel, Trachurus mediterraneus (Steindachner, 1868), is highly important both for the ecosystem, as a link between trophic levels, and for fisheries and local livelihoods. This study investigates the T. mediterraneus stock along the Romanian coast for more than 10 years (2014–2024), reporting the following data on its bio-ecological characteristics and stock status: size, age, sex ratio, and estimated biomass. Horse mackerel at the Romanian coast revealed an initially slower growth rate followed by acceleration in later years, which may reflect local ecological influences such as resource availability, environmental conditions, or selective pressure. The spatial distribution of the species along the Romanian shelf indicates a clear pattern of coastal aggregation, highlighting the need for targeted and precautionary fisheries management measures, aiming to ensure a sustainable stock. Full article

Water-related ecosystem services provide a broad range of benefits, including the mitigation of extreme hydrometeorological events, the provision of water for various uses, the support of tourism, and the provision of cultural services. This study assesses the perceptions and accessibility of these services among communities located near the Alafiarou and Okpara dams in Benin and the Bagré dam in Burkina Faso. The methodology involved designing and implementing a questionnaire in KoboCollect, with trained agents deployed to conduct data collection at each of the three sites. Data analysis indicates that respondents identified biodiversity conservation and the provision of drinking water as the most crucial ecosystem services. Over two-thirds of participants reported observing both positive and negative changes in the services provided by rivers and in socio-economic activities since the construction of the dams. While the majority noted improvements in agriculture, irrigation, water quality, fisheries, and flow rates, other changes included biodiversity loss, a decrease in vegetation cover (notably trees and shrubs), an increase in the population of mosquitoes and other insects, and a decline in fishery resources downstream. Despite these challenges, local communities were strongly willing to participate in initiatives aimed at protecting and restoring river ecosystems and their related services. Full article

Trace metal pollution in tropical freshwater ecosystems poses growing public health concerns, particularly in regions where fisheries are central to food security; however, little is known about metal exposure risks in the Western Amazon. This study presents the first assessment of trace metal concentrations in fish sold at the main market in El Coca, a rapidly growing city in the Ecuadorian Amazon. We analyzed 11 trace metals in 17 commercially important species and estimated seven health risk indices based on two fish consumption scenarios and international reference dose standards. Our results show that all species exceeded recommended thresholds for arsenic, mercury, and lead, while one species surpassed guidelines for aluminum. Metal concentrations varied by species and river of origin: small catfish from the Payamino River had elevated cadmium, chromium, copper, and manganese levels, potentially linked to upstream gold mining, whereas larger catfish showed higher mercury and arsenic accumulation. Monte Carlo simulations of risk indices suggested overall low disease risk, but the lack of local demographic data limits accurate assessments for vulnerable groups. Despite sampling limitations, our findings offer the first baseline for monitoring trace metal exposure in the northern Ecuadorian Amazon and underscore the need for targeted public health strategies in this understudied region. Full article

Obtaining the echo of individual fish is an important prerequisite for fisheries acoustic applications, such as in situ measurement of fish target strength and assessment of fish abundance using the counting method. It is also the foundation for evaluating the growth status of farmed fish and managing aquaculture risks. The density of farmed fish populations is typically higher, and such high-density aquaculture further increases the difficulty of obtaining individual fish echoes in practical applications. Building upon previous research and considering the behavioral characteristics of fish in aquaculture settings, this study conducted performance simulations, live fish experiments in simulated aquaculture cages, and comparative evaluations of three individual fish broadband echo detection methods based on a broadband signal system: the amplitude pulse width method (APM) based on echo envelopes, the peak detection and time delay estimation method (PDM), and the peak time delay combined with instantaneous frequency method (PDIM). This study assumed a dorsolateral fish orientation, which limits its research scope and applicability. The results showed that the PDIM achieved a detection accuracy of 78.34% and a false recognition rate of 1.32%. The APM based on echo envelopes was insensitive to individual fish echoes and had lower recognition accuracy. The PDM exhibited better individual fish echo capture capabilities, while the PDIM demonstrated superior overlapping echo rejection capabilities. Full article

In this study, we sought to improve the productivity of Far Eastern catfish (Silurus asotus) and tropical eel (Anguilla bicolor), which are high-value fish species in the Republic of Korea, as well as that of associated crops by applying biofloc technology (BFT)-based aquaponics systems. The following three systems were used: the flow-through system (FTS), BFT, and BFT aquaponics system (BAPs). Caipira lettuce (Lactuca sativa) was utilized and hydroponics (HP) was implemented to compare crop productivity. After 42 days of treatment, the BAPs and BFT systems improved fish productivity, with weight gain rates of 134.47 ± 1.80% in BAPs-cat, 130.38 ± 0.95% in BFT, and 114.21 ± 6.62% in FTS for S. asotus, and 70.61 ± 3.26% in BAPs-eel, 62.37 ± 7.04% in BFT, and 47.83 ± 1.09% in FTS for A. bicolor. During the experiment, the total ammonia nitrogen and NO₂⁻-N concentrations were stable in all plots. In the case of NO₃⁻-N, BFT showed an increasing tendency while both BAPs showed a decrease compared with that of the BFT. BAPs-cat (total weight: 224.1 ± 6.37 g) and HP (220.3 ± 7.17 g) resulted in similar growth. However, in BAPs-eel was 187.7 ± 3.46 g due to root degradation. Water content analysis showed that BAPs-cat and BAPs-eel contained sufficient K, Ca, P, and S, which are important for crop growth. Overall, the effect of BAPs on fish growth was higher than that of FTS. This study reveals that integrating BFT with aquaponics improves productivity for high-value fish and associated crops while maintaining stable water quality. This method offers sustainable, efficient production, reduces environmental impact, and provides insights for future research in sustainable aquaculture practices. Full article

Generic and consistent formulations for measurement of the backscattering cross section $\left({\sigma }_{bs}\right)$ and the volume backscattering coefficient $\left(s_v\right)$ using broadband pulse compression and narrowband echo integration are derived, for small- and finite-amplitude sound propagation. The theory applies to backscattering operation of echosounders and sonars in general, with focus on fisheries acoustics. Formally consistent mathematical relationships for broadband and narrowband operation of such instruments are established that ensure consistency with the underlying power budget equations on average-power form, bridging a gap in prior literature. The formulations give full flexibility in choice of transmit signals and reference signals for pulse compression. Generic and general criteria for quantitative consistency between broadband and narrowband operation are derived, establishing new knowledge and analysis tools. These criteria become identical for small- and finite-amplitude sound propagation. In addition to general criteria, two special cases are considered, relevant for actual operation scenarios. The criteria serve to test and evaluate the extent to which the methods used in broadband pulse compression and narrowband echo integration operating modes are correct and consistent, and to identify and reduce experienced discrepancies between such methods. These are topics of major concern for quantitative acoustic stock assessment, underlying national and international fisheries quota regulations. Full article

Multimodal knowledge graphs have recently been successfully applied to tasks such as those relating to information retrieval, question and answer, and recommender systems. In this study, we propose a dual-path fine-tuning mechanism technique with a low-rank adapter and an embedded cueing layer, aiming to improve the generalization and accuracy of the model in analogical reasoning tasks. The low-rank fine-tuning (LoRA) technique with rank-stable scaling factor is used to fine-tune the MKGformer model, and a cue-embedding layer is innovatively added to the input layer, which enables the model to better grasp the scale of the relationship between entities according to the dynamic cue vectors during the fine-tuning process and ensures that the model achieves the best results during training. The experimental results show that the R-MKG model improves several evaluation indexes by more than 20%, which is significantly better than the traditional DoRA and FA-LoRA methods. This research provides technical support for multimodal knowledge graph analogical reasoning. We hope that our work will bring benefits and inspire future research. Full article

In this study, the distribution patterns of the nitrifying and denitrifying microbiome in a large-scale biofilter (587.24 m³) in a cold freshwater recirculating aquaculture system (RAS) was investigated. Previous studies have revealed that the water quality, nitrification, and denitrification rates in the front (BFF), middle (BFM), and back (BFB) of this biofilter are different. The results showed the highest diversity of the denitrifying microbiome in the BFB, followed by BFF and BFM, whereas nitrifying microbiome diversity remained consistent across different positions. Two genera, Nitrosomonas and Nitrosospira, dominated the nitrifying microbiome, while Pseudomonas, Thauera, Cupriavidus, Dechloromonas, Azoarcus, and Paracoccus comprised the top six denitrifying genera. Principal coordinate analysis indicated a distinct spatial distribution pattern of the denitrifying microbiome but not the nitrifying microbiome. The genera Pseudomonas and Dechloromonas were the biomarkers of the BFF and BFB, respectively. Redundancy analysis showed that nitrite, nitrate, dissolved oxygen, and soluble reactive phosphorus influenced the functional microbiome distribution pattern. Network correlation analysis identified one nitrifying hub (Nitrosospira) in the BFF, five denitrifying hubs (Aromatoleum, Dechloromonas, Paracoccus, Ruegeria, and Thauera) in the BFM, and three denitrifying hubs (Azoarcus, Magnetospirillum, and Thauera) in the BFB. Exclusively negative correlations were found between hubs and its adjacent nodes in the BFF and BFB. This study demonstrates that habitat can shape the distribution patterns of the nitrifying and denitrifying microbiome in the biofilter of the RAS, with the BFF exhibiting greater benefits for the nitrification process. Full article

In this study, we applied a new technique for vegetatively transplanting kelp Eisenia bicyclis to restore macroalgal habitats. We aimed to assess the restoration success of the E. bicyclis bed by comparing the carbon and nitrogen stable isotope ratios of macrobenthic consumers and their isotopic niches in artificial and control (barren ground) habitats. Except for the deposit feeding group, no significant differences were observed in isotopic values of the other feeding groups (suspension feeders, herbivores, omnivores, and carnivores) between the two sites. In contrast, our results showed wider isotopic niche indices for all feeding groups at the transplantation site compared to those at the control site, suggesting increased trophic diversity in the artificial habitat. Overall, these results indicate that the macroalgal bed created using the new method can play an ecological role in restoring functional properties of food web structures via trophic support of degraded coastal ecosystems. Full article

Prime editing (PE) has emerged as a transformative genome editing technology, enabling precise base substitutions, insertions, and deletions without inducing double-strand DNA breaks (DSBs). However, its application in zebrafish remains limited by low efficiency. Here, we leveraged PE7, a state-of-the-art PE system, combined with La-accessible prime editing guide RNAs (pegRNAs), to enhance editing efficiency in zebrafish. By co-incubating PE7 protein with La-accessible pegRNAs to form ribonucleoprotein (RNP) complexes and microinjecting these complexes into zebrafish embryos, we achieved up to 15.99% editing efficiency at target loci—an improvement of 6.81- to 11.46-fold over PE2. Additionally, we observed 16.60% 6 bp insertions and 13.18% 10 bp deletions at the adgrf3b locus, representing a 3.13-fold increase over PE2. Finally, we used PE to introduce desired edits at the tyr locus, successfully generating zebrafish with the tyr P302L mutation that exhibited melanin reduction. These findings demonstrate that PE7 significantly enhances prime editing efficiency in fish, providing novel tools for functional gene studies and genetic breeding in aquatic species. Full article

The purpose of this study was to determine the effect of breed and sex (3 × 2) on the basic chemical composition, concentration of some minerals, and physicochemical properties of edible giblets of farm geese. The study material consisted of edible giblets (livers, gizzards, hearts) obtained from 42 geese from three Polish native breeds (Rypin, Suwałki, Kartuzy) at 220 weeks of age. Edible giblets were obtained during goose evisceration from seven males and seven females of each breed. Each bird was an experimental unit. Goose breed and sex had a significant effect on the chemical composition and physicochemical properties of the edible giblets. Rypin geese had higher (p < 0.05) intramuscular fat content in the gizzard and heart, as well as higher protein content in the heart and lower water content in the gizzard, compared to Kartuzy and Suwałki geese. Kartuzy geese, in turn, had higher content of water in the heart, and higher concentrations of phosphorus, calcium, iron, manganese, sodium, and chromium in the liver, compared to Rypin and Suwałki geese. In turn, Suwałki geese had higher concentrations of phosphorus in the gizzard, and potassium, phosphorus, copper, and iron in the heart compared to the hearts of Rypin and Suwałki geese, while Kartuzy and Suwałki geese higher concentrations of sodium, magnesium, zinc, and manganese in hearts than the hearts of Rypin geese. In these studies, the highest lightness (L*) was observed in the liver and heart of Rypin geese, the lowest yellowness (b*) was observed in the gizzard of Suwałki geese, and the highest pH₂₄ and EC₂₄ were observed in the heart of Kartuzy geese. Regardless of breed, males had higher protein, collagen, and intramuscular fat contents in the heart, a higher water content in the gizzard, higher concentrations of potassium, and sodium in the liver and gizzard, copper in the heart and liver, and phosphorus in the gizzard, and less water in the heart and zinc in the liver, as well as higher (p < 0.05) concentrations of iron in the liver and heart compared with females. The breed by sex interaction was significant for intramuscular fat and water content in the gizzard and heart, and protein content in the heart. Significant differences were also noted for EC₂₄ in the liver and heart, yellowness of the gizzard, and concentrations of most labeled minerals in edible giblets. The obtained results indicate that the nutritional value and suitability of edible goose giblets for the poultry industry vary depending on breed and sex. Due to the limited research on the chemical composition and physicochemical properties of goose giblets, further research in this area is necessary in the future. Full article

Selenium (Se) is an essential trace element critical for animal growth and immune function. This study investigated the dietary selenium requirement of juvenile large yellow croaker (Larimichthys crocea) through an 8-week feeding trial. Five experimental diets were formulated by supplementing a basal diet with selenium polysaccharides (Se-PS) at 0, 20, 30, 40, and 50 mg/kg, resulting in analyzed Se concentrations of 0.35, 0.54, 0.71, 0.93, and 1.11 mg/kg, respectively. The results demonstrated that growth performance and feed efficiency improved with increasing dietary selenium, peaking at 0.93 mg/kg before declining at higher levels. Antioxidant enzyme activities—superoxide dismutase (SOD) and catalase (CAT)—in serum and liver tissues exhibited a dose-dependent increase, reaching maximal levels at 1.11 mg/kg. Conversely, malondialdehyde (MDA), a marker of oxidative stress, progressively decreased in both serum and liver, attaining its lowest concentration at 1.11 mg/kg, though this did not differ significantly from the 0.93 mg/kg group (p = 0.056). Tissue selenium accumulation was highest at these optimal dietary levels. Based on the growth performance, oxidative stress response, and tissue selenium retention, the recommended dietary selenium requirement for juvenile large yellow croaker is 0.93 mg/kg. These findings highlight the importance of optimal Se supplementation in aquafeeds to enhance growth and physiological health in farmed fish. Full article