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14 pages, 2510 KiB  
Article
DFT Study of Hydrostatic Pressure Effects up to 1.0 GPa on the Electronic and Magnetic Properties of Laves Phases ErAl2 and ErNi2
by Tomás López-Solenzal, José Luis Sánchez Llamazares, José Luis Enríquez-Carrejo and César Fidel Sánchez-Valdés
Metals 2025, 15(6), 680; https://doi.org/10.3390/met15060680 - 19 Jun 2025
Viewed by 321
Abstract
This study employs DFT+U calculations to investigate the ferromagnetic properties of ErAl2 and ErNi2 Laves phases under an external hydrostatic pressure P (0 GPa ≤ P ≤ 1.0 GPa). The calculated magnetic moments per formula unit for both crystalline structures align [...] Read more.
This study employs DFT+U calculations to investigate the ferromagnetic properties of ErAl2 and ErNi2 Laves phases under an external hydrostatic pressure P (0 GPa ≤ P ≤ 1.0 GPa). The calculated magnetic moments per formula unit for both crystalline structures align with experimentally reported values: 4.40 μB/f.u. in the hard magnetization <001> axis for ErAl2 and 5.56 μB/f.u. in the easy magnetization <001> axis for ErNi2. The DFT results indicate that the magnetic moment remains unchanged up to 1 GPa of hydrostatic pressure, with no structural instabilities observed, as evidenced by a nearly constant formation energy for ErAl2 and ErNi2 alloys. The simulations confirm that the magnetic behavior of ErAl2 is primarily driven by the electrons localized in the f orbitals. In contrast, for ErNi2, both d and f orbitals significantly contribute to the total magnetic moment. Finally, the electronic specific heat coefficient was calculated and reported as a function of hydrostatic pressure up to P = 1.0 GPa for each Laves phase. Full article
(This article belongs to the Special Issue Study on the Preparation and Properties of Metal Functional Materials)
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27 pages, 6983 KiB  
Article
DA-YOLOv7: A Deep Learning-Driven High-Performance Underwater Sonar Image Target Recognition Model
by Zhe Chen, Guohao Xie, Xiaofang Deng, Jie Peng and Hongbing Qiu
J. Mar. Sci. Eng. 2024, 12(9), 1606; https://doi.org/10.3390/jmse12091606 - 10 Sep 2024
Cited by 6 | Viewed by 2429
Abstract
Affected by the complex underwater environment and the limitations of low-resolution sonar image data and small sample sizes, traditional image recognition algorithms have difficulties achieving accurate sonar image recognition. The research builds on YOLOv7 and devises an innovative fast recognition model designed explicitly [...] Read more.
Affected by the complex underwater environment and the limitations of low-resolution sonar image data and small sample sizes, traditional image recognition algorithms have difficulties achieving accurate sonar image recognition. The research builds on YOLOv7 and devises an innovative fast recognition model designed explicitly for sonar images, namely the Dual Attention Mechanism YOLOv7 model (DA-YOLOv7), to tackle such challenges. New modules such as the Omni-Directional Convolution Channel Prior Convolutional Attention Efficient Layer Aggregation Network (OA-ELAN), Spatial Pyramid Pooling Channel Shuffling and Pixel-level Convolution Bilat-eral-branch Transformer (SPPCSPCBiFormer), and Ghost-Shuffle Convolution Enhanced Layer Aggregation Network-High performance (G-ELAN-H) are central to its design, which reduce the computational burden and enhance the accuracy in detecting small targets and capturing local features and crucial information. The study adopts transfer learning to deal with the lack of sonar image samples. By pre-training the large-scale Underwater Acoustic Target Detection Dataset (UATD dataset), DA-YOLOV7 obtains initial weights, fine-tuned on the smaller Smaller Common Sonar Target Detection Dataset (SCTD dataset), thereby reducing the risk of overfitting which is commonly encountered in small datasets. The experimental results on the UATD, the Underwater Optical Target Detection Intelligent Algorithm Competition 2021 Dataset (URPC), and SCTD datasets show that DA-YOLOV7 exhibits outstanding performance, with mAP@0.5 scores reaching 89.4%, 89.9%, and 99.15%, respectively. In addition, the model maintains real-time speed while having superior accuracy and recall rates compared to existing mainstream target recognition models. These findings establish the superiority of DA-YOLOV7 in sonar image analysis tasks. Full article
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41 pages, 7056 KiB  
Article
Translation Fidelity and Respiration Deficits in CLPP-Deficient Tissues: Mechanistic Insights from Mitochondrial Complexome Profiling
by Jana Key, Suzana Gispert, Gabriele Koepf, Julia Steinhoff-Wagner, Marina Reichlmeir and Georg Auburger
Int. J. Mol. Sci. 2023, 24(24), 17503; https://doi.org/10.3390/ijms242417503 - 15 Dec 2023
Cited by 5 | Viewed by 2834
Abstract
The mitochondrial matrix peptidase CLPP is crucial during cell stress. Its loss causes Perrault syndrome type 3 (PRLTS3) with infertility, neurodegeneration, and a growth deficit. Its target proteins are disaggregated by CLPX, which also regulates heme biosynthesis via unfolding ALAS enzymes, providing access [...] Read more.
The mitochondrial matrix peptidase CLPP is crucial during cell stress. Its loss causes Perrault syndrome type 3 (PRLTS3) with infertility, neurodegeneration, and a growth deficit. Its target proteins are disaggregated by CLPX, which also regulates heme biosynthesis via unfolding ALAS enzymes, providing access for pyridoxal-5′-phosphate (PLP). Despite efforts in diverse organisms with multiple techniques, CLPXP substrates remain controversial. Here, avoiding recombinant overexpression, we employed complexomics in mitochondria from three mouse tissues to identify endogenous targets. A CLPP absence caused the accumulation and dispersion of CLPX-VWA8 as AAA+ unfoldases, and of PLPBP. Similar changes and CLPX-VWA8 co-migration were evident for mitoribosomal central protuberance clusters, translation factors like GFM1-HARS2, the RNA granule components LRPPRC-SLIRP, and enzymes OAT-ALDH18A1. Mitochondrially translated proteins in testes showed reductions to <30% for MTCO1-3, the mis-assembly of the complex IV supercomplex, and accumulated metal-binding assembly factors COX15-SFXN4. Indeed, heavy metal levels were increased for iron, molybdenum, cobalt, and manganese. RT-qPCR showed compensatory downregulation only for Clpx mRNA; most accumulated proteins appeared transcriptionally upregulated. Immunoblots validated VWA8, MRPL38, MRPL18, GFM1, and OAT accumulation. Co-immunoprecipitation confirmed CLPX binding to MRPL38, GFM1, and OAT, so excess CLPX and PLP may affect their activity. Our data mechanistically elucidate the mitochondrial translation fidelity deficits which underlie progressive hearing impairment in PRLTS3. Full article
(This article belongs to the Section Molecular Biology)
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10 pages, 888 KiB  
Article
Nucleation of L12-Al3M (M = Sc, Er, Y, Zr) Nanophases in Aluminum Alloys: A First-Principles ThermodynamicsStudy
by Shuai Liu, Fangjun Liu, Zhanhao Yan, Baohua Nie, Touwen Fan, Dongchu Chen and Yu Song
Crystals 2023, 13(8), 1228; https://doi.org/10.3390/cryst13081228 - 9 Aug 2023
Cited by 7 | Viewed by 1696
Abstract
High-performance Sc-containing aluminum alloys are limited in their industrial application due to the high cost of Sc elements. Er, Zr, and Y elements are candidates for replacing Sc elements. Combined with the first-principles thermodynamic calculation and the classical nucleation theory, the nucleation of [...] Read more.
High-performance Sc-containing aluminum alloys are limited in their industrial application due to the high cost of Sc elements. Er, Zr, and Y elements are candidates for replacing Sc elements. Combined with the first-principles thermodynamic calculation and the classical nucleation theory, the nucleation of L12-Al3M (M = Sc, Er, Y, Zr) nanophases in dilutealuminum alloys were investigated to reveal their structural stability. The calculated results showed that the critical radius and nucleation energy of the L12-Al3M phases were as follows: Al3Er > Al3Y > Al3Sc > Al3Zr. The Al3Zr phase was the easiest to nucleate in thermodynamics, while the nucleation of the Al3Y and Al3Er phases were relatively difficult in thermodynamics. Various structures of Al3(Y, Zr) phases with the radius r < 1 nm can coexist in Al-Y-Zr alloys. At a precipitate’s radius of 1–10 nanometers, the core–shelled Al3Zr(Y) phase illustrated the highest nucleation energy, while the separated structure Al3Zr/Al3Y obtained the lowest one, and had thermodynamic advantages in the nucleation process. Moreover, the core–shelled Al3Zr(Y) phase obtained a higher nucleation energy than Al3Zr(Sc) and Al3Zr(Er). Core–doubleshelled Al3Zr/Er(Y) obtained a lower nucleation energy than that of Al3Zr(Y) due to the negative ΔGchem of Al3Er and the negative Al3Er/Al3Y interfacial energy, and was preferentially precipitated in thermodynamics stability. Full article
(This article belongs to the Special Issue Crystallization of High Performance Metallic Materials)
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13 pages, 5319 KiB  
Article
Fiber Bragg Grating Sensor Networks Enhance the In Situ Real-Time Monitoring Capabilities of MLI Thermal Blankets for Space Applications
by Alessandro Aimasso, Carlo Giovanni Ferro, Matteo Bertone, Matteo D. L. Dalla Vedova and Paolo Maggiore
Micromachines 2023, 14(5), 926; https://doi.org/10.3390/mi14050926 - 25 Apr 2023
Cited by 12 | Viewed by 2518
Abstract
The utilization of Fiber Bragg Grating (FBG) sensors in innovative optical sensor networks has displayed remarkable potential in providing precise and dependable thermal measurements in hostile environments on Earth. Multi-Layer Insulation (MLI) blankets serve as critical components of spacecraft and are employed to [...] Read more.
The utilization of Fiber Bragg Grating (FBG) sensors in innovative optical sensor networks has displayed remarkable potential in providing precise and dependable thermal measurements in hostile environments on Earth. Multi-Layer Insulation (MLI) blankets serve as critical components of spacecraft and are employed to regulate the temperature of sensitive components by reflecting or absorbing thermal radiation. To enable accurate and continuous monitoring of temperature along the length of the insulative barrier without compromising its flexibility and low weight, FBG sensors can be embedded within the thermal blanket, thereby enabling distributed temperature sensing. This capability can aid in optimizing the thermal regulation of the spacecraft and ensuring the reliable and safe operation of vital components. Furthermore, FBG sensors offer sev eral advantages over traditional temperature sensors, including high sensitivity, immunity to electromagnetic interference, and the ability to operate in harsh environments. These properties make FBG sensors an excellent option for thermal blankets in space applications, where precise temperature regulation is crucial for mission success. Nevertheless, the calibration of temperature sensors in vacuum conditions poses a significant challenge due to the lack of an appropriate calibration reference. Therefore, this paper aimed to investigate innovative solutions for calibrating temperature sensors in vacuum conditions. The proposed solutions have the potential to enhance the accuracy and reliability of temperature measurements in space applications, which can enable engineers to develop more resilient and dependable spacecraft systems. Full article
(This article belongs to the Section E:Engineering and Technology)
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10 pages, 3530 KiB  
Article
First-Principle Investigation of the Interface Properties of the Core-Shelled L12-Al3M (M = Sc, Zr, Er, Y) Phase
by Yu Song, Songtao Zhan, Baohua Nie, Shuai Liu, Haiying Qi, Fangjun Liu, Touwen Fan and Dongchu Chen
Crystals 2023, 13(3), 420; https://doi.org/10.3390/cryst13030420 - 28 Feb 2023
Cited by 6 | Viewed by 1894
Abstract
The interface structure and segregation behavior of L12-Al3M (M = Sc, Zr, Er, Y) phases were investigated based on first-principles calculations. The results showed that the order of the thermodynamically stable interface was Al3Zr/Al > Al3 [...] Read more.
The interface structure and segregation behavior of L12-Al3M (M = Sc, Zr, Er, Y) phases were investigated based on first-principles calculations. The results showed that the order of the thermodynamically stable interface was Al3Zr/Al > Al3Sc/Al > Al3Er/ Al > Al3Y/Al. The interfaces of Al3Sc/Al3Zr, Al3Er/Al3Zr, and Al3Y/Al3Er obtained negative interfacial energies and low coherent strain energies and were favorable to form a clear interface. Zr atom tended to segregate to the first atomic layer on the Al side of the Al/Al3Sc, Al/Al3Er, and Al/Al3Y interfaces. The driving effect of the Zr atom segregation to the Al3Y shows was stronger than that to Sc and Er atoms, whereas the high coherent strain energy hindered the formation of Al3Y/Al3Zr interface. Er atom tended to segregate at the Al/Al3Y interface and accelerated the formation of core-shelled Al3Y/Al3Er. Furthermore, the formation of the double core-shelled Al3Y/Al3Er/Al3Zr was discussed. Full article
(This article belongs to the Special Issue Advances in High Strength Steels)
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15 pages, 2859 KiB  
Article
Clinical and Radiological Evaluation of a Self-Condensing Bone Implant in One-Stage Sinus Augmentation: A 3-Year Follow-Up Retrospective Study
by Luca Comuzzi, Margherita Tumedei, Morena Petrini, Tea Romasco, Felice Lorusso, Francesco De Angelis, Adriano Piattelli, Marco Tatullo and Natalia Di Pietro
Int. J. Environ. Res. Public Health 2023, 20(3), 2583; https://doi.org/10.3390/ijerph20032583 - 31 Jan 2023
Cited by 8 | Viewed by 2273
Abstract
Stabilization of dental implants in the sinus region with a bone height below 4 mm gen-erally requires a two-stage sinus floor elevation surgery. To improve this aspect, the aim of this retrospective study was to demonstrate the feasibility of performing a one-stage maxillary [...] Read more.
Stabilization of dental implants in the sinus region with a bone height below 4 mm gen-erally requires a two-stage sinus floor elevation surgery. To improve this aspect, the aim of this retrospective study was to demonstrate the feasibility of performing a one-stage maxillary sinus augmentation using an innovative self-condensing implant design, even in case of a bone height close to 2 mm. Clinical and radiological outcomes from 54 patients (26 females; 28 males; 69 total implants positioned) were analyzed 3 years post-surgery. The three-dimensional grafts change was evaluated by Cone-Beam Computed Tomography (CBCT) before surgery (T0), immediately after surgery (T1), and 1-year post-surgery (T2). The sinus floor levels measured at the medial (M-W), middle (MD-W), and lateral (L-W) walls reported: M-W of 1.9 ± 2.4 mm (T1) and 1.7 ± 2.6 mm (T2); MD-W of −0.1 ± 2.7 mm (T1) and 0.7 ± 2.4 mm (T2); L-W of 3.1 ± 3.0 mm (T1) and 3.1 ± 3.0 mm (T2); besides a bone crest height (C-F) of 4.6 ± 2.0 mm (T1) and 12.1 ± 1.4 mm (T2). Moreover, after 3 years only 1 implant was lost, and so an implant survival rate of 98.55% was recorded. In conclusion, these results suggest the efficacy of using this implant design for a one-stage sinus lift approach, not only in terms of increased implant survival rate and decreased marginal bone loss, but also for its potential applicability in case of reduced bone height. Full article
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33 pages, 3508 KiB  
Article
CLPP Depletion Causes Diplotene Arrest; Underlying Testis Mitochondrial Dysfunction Occurs with Accumulation of Perrault Proteins ERAL1, PEO1, and HARS2
by Jana Key, Suzana Gispert, Lieke Koornneef, Esther Sleddens-Linkels, Aneesha Kohli, Sylvia Torres-Odio, Gabriele Koepf, Shady Amr, Marina Reichlmeir, Patrick N. Harter, Andrew Phillip West, Christian Münch, Willy M. Baarends and Georg Auburger
Cells 2023, 12(1), 52; https://doi.org/10.3390/cells12010052 - 22 Dec 2022
Cited by 6 | Viewed by 3697
Abstract
Human Perrault syndrome (PRLTS) is autosomal, recessively inherited, and characterized by ovarian insufficiency with hearing loss. Among the genetic causes are mutations of matrix peptidase CLPP, which trigger additional azoospermia. Here, we analyzed the impact of CLPP deficiency on male mouse meiosis stages. [...] Read more.
Human Perrault syndrome (PRLTS) is autosomal, recessively inherited, and characterized by ovarian insufficiency with hearing loss. Among the genetic causes are mutations of matrix peptidase CLPP, which trigger additional azoospermia. Here, we analyzed the impact of CLPP deficiency on male mouse meiosis stages. Histology, immunocytology, different OMICS and biochemical approaches, and RT-qPCR were employed in CLPP-null mouse testis. Meiotic chromosome pairing and synapsis proceeded normally. However, the foci number of the crossover marker MLH1 was slightly reduced, and foci persisted in diplotene, most likely due to premature desynapsis, associated with an accumulation of the DNA damage marker γH2AX. No meiotic M-phase cells were detected. Proteome profiles identified strong deficits of proteins involved in male meiotic prophase (HSPA2, SHCBP1L, DMRT7, and HSF5), versus an accumulation of AURKAIP1. Histone H3 cleavage, mtDNA extrusion, and cGAMP increase suggested innate immunity activation. However, the deletion of downstream STING/IFNAR failed to alleviate pathology. As markers of underlying mitochondrial pathology, we observed an accumulation of PRLTS proteins ERAL1, PEO1, and HARS2. We propose that the loss of CLPP leads to the extrusion of mitochondrial nucleotide-binding proteins to cytosol and nucleus, affecting late meiotic prophase progression, and causing cell death prior to M-phase entry. This phenotype is more severe than in mito-mice or mutator-mice. Full article
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22 pages, 8319 KiB  
Article
Route Plans for UAV Aerial Surveys according to Different DEMs in Complex Mountainous Surroundings: A Case Study in the Zheduoshan Mountains, China
by Qingsong Du, Guoyu Li, Yu Zhou, Dun Chen, Mingtang Chai, Shunshun Qi, Yapeng Cao, Liyun Tang and Hailiang Jia
Remote Sens. 2022, 14(20), 5215; https://doi.org/10.3390/rs14205215 - 18 Oct 2022
Cited by 3 | Viewed by 2945
Abstract
Accurate and error-free digital elevation model (DEM) data are a basic guarantee for the safe flight of unmanned aerial vehicles (UAVs) during surveys in the wild, especially in moun-tainous areas with large topographic undulations. Existing free and open-source DEM data gen-erally cover large [...] Read more.
Accurate and error-free digital elevation model (DEM) data are a basic guarantee for the safe flight of unmanned aerial vehicles (UAVs) during surveys in the wild, especially in moun-tainous areas with large topographic undulations. Existing free and open-source DEM data gen-erally cover large areas, with relatively high spatial resolutions (~90, 30, and even 12.5 m), but they do not have the advantage of timeliness and cannot accurately reflect current and up-to-date topographical information in the survey area. UAV pre-scanning missions can provide highly accurate and recent terrain data as a reference for UAV route planning and ensure security for subsequent aerial survey missions; however, they are time consuming. In addition, being limited to the electric charge of the UAV, pre-scanning increases the human, financial, and time consumption of field missions, and it is not applicable for field aerial survey missions in reality, unless otherwise specified, especially in harsh environments. In this paper, we used interferometric synthetic aper-ture radar (InSAR) technology to process Sentinel-1a data to obtain the DEMs of the survey area, which were used for route planning, and other free and open-source DEMs were also used for flightline plans. The digital surface models (DSMs) were obtained from the structure of the UAV pre-scan mission images, applying structure for motion (SfM) technology as the elevation reference. Comparing the errors between the InSAR-derived DEMs and the four open-source DEMs based on the reference DSM to analyze the practicability of flight route planning, the results showed that among the four DEMs, the SRTM DEM with a spatial resolution of 30 m performed best, which was considered as the first reference for UAV route plans when the survey area in complex mountainous regions is covered with a poor or inoperative network. The InSAR-derived DEMs from the Sentinel-1 images have great potential value for UAV flight planning, with a large perpendicular baseline and short temporal baseline. This work quantitatively analyzed the errors among the different DEMs and provided a discussion regarding UAV flightline plans based on external DEMs. This can not only effectively reduce the manpower, materials, and time consumption of field operations, improving the efficiency of UAV survey tasks, but it also broadens the use of InSAR technology. Furthermore, with the launch of high-resolution SAR satellites, InSAR-derived DEMs with high spatial and temporal resolutions provide an optimistic and credible strategy for UAV route planning with small errors. Full article
(This article belongs to the Special Issue Remote Sensing and GIS for Geomorphological Mapping)
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17 pages, 2223 KiB  
Review
A Whiff of Sulfur: One Wind a Day Keeps the Doctor Away
by Eduard Tiganescu, Markus Alexander Lämmermann, Yannick Ney, Ahmad Yaman Abdin, Muhammad Jawad Nasim and Claus Jacob
Antioxidants 2022, 11(6), 1036; https://doi.org/10.3390/antiox11061036 - 24 May 2022
Cited by 2 | Viewed by 4316
Abstract
Reactive Sulfur Species (RSS), such as allicin from garlic or sulforaphane from broccoli, are fre-quently associated with biological activities and possible health benefits in animals and humans. Among these Organic Sulfur Compounds (OSCs) found in many plants and fungi, the Volatile Sulfur Compounds [...] Read more.
Reactive Sulfur Species (RSS), such as allicin from garlic or sulforaphane from broccoli, are fre-quently associated with biological activities and possible health benefits in animals and humans. Among these Organic Sulfur Compounds (OSCs) found in many plants and fungi, the Volatile Sulfur Compounds (VSCs) feature prominently, not only because of their often-pungent smell, but also because they are able to access places which solids and solutions cannot reach that easily. Indeed, inorganic RSS such as hydrogen sulfide (H2S) and sulfur dioxide (SO2) can be used to lit-erally fumigate entire rooms and areas. Similarly, metabolites of garlic, such as allyl methyl sulfide (AMS), are formed metabolically in humans in lower concentrations and reach the airways from inside the body as part of one’s breath. Curiously, H2S is also formed in the gastrointestinal tract by gut bacteria, and the question of if and for which purpose this gas then crosses the barriers and enters the body is indeed a delicate matter for equally delicate studies. In any case, nature is surprisingly rich in such VSCs, as fruits (for instance, the infamous durian) demonstrate, and therefore these VSCs represent a promising group of compounds for further studies. Full article
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29 pages, 31340 KiB  
Article
Inactivity of Peptidase ClpP Causes Primary Accumulation of Mitochondrial Disaggregase ClpX with Its Interacting Nucleoid Proteins, and of mtDNA
by Jana Key, Sylvia Torres-Odio, Nina C. Bach, Suzana Gispert, Gabriele Koepf, Marina Reichlmeir, A. Phillip West, Holger Prokisch, Peter Freisinger, William G. Newman, Stavit Shalev, Stephan A. Sieber, Ilka Wittig and Georg Auburger
Cells 2021, 10(12), 3354; https://doi.org/10.3390/cells10123354 - 29 Nov 2021
Cited by 10 | Viewed by 5649
Abstract
Biallelic pathogenic variants in CLPP, encoding mitochondrial matrix peptidase ClpP, cause a rare autosomal recessive condition, Perrault syndrome type 3 (PRLTS3). It is characterized by primary ovarian insufficiency and early sensorineural hearing loss, often associated with progressive neurological deficits. Mouse models showed [...] Read more.
Biallelic pathogenic variants in CLPP, encoding mitochondrial matrix peptidase ClpP, cause a rare autosomal recessive condition, Perrault syndrome type 3 (PRLTS3). It is characterized by primary ovarian insufficiency and early sensorineural hearing loss, often associated with progressive neurological deficits. Mouse models showed that accumulations of (i) its main protein interactor, the substrate-selecting AAA+ ATPase ClpX, (ii) mitoribosomes, and (iii) mtDNA nucleoids are the main cellular consequences of ClpP absence. However, the sequence of these events and their validity in human remain unclear. Here, we studied global proteome profiles to define ClpP substrates among mitochondrial ClpX interactors, which accumulated consistently in ClpP-null mouse embryonal fibroblasts and brains. Validation work included novel ClpP-mutant patient fibroblast proteomics. ClpX co-accumulated in mitochondria with the nucleoid component POLDIP2, the mitochondrial poly(A) mRNA granule element LRPPRC, and tRNA processing factor GFM1 (in mouse, also GRSF1). Only in mouse did accumulated ClpX, GFM1, and GRSF1 appear in nuclear fractions. Mitoribosomal accumulation was minor. Consistent accumulations in murine and human fibroblasts also affected multimerizing factors not known as ClpX interactors, namely, OAT, ASS1, ACADVL, STOM, PRDX3, PC, MUT, ALDH2, PMPCB, UQCRC2, and ACADSB, but the impact on downstream metabolites was marginal. Our data demonstrate the primary impact of ClpXP on the assembly of proteins with nucleic acids and show nucleoid enlargement in human as a key consequence. Full article
(This article belongs to the Section Mitochondria)
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17 pages, 15059 KiB  
Article
Quantitative Proteomics Analysis of Berberine-Treated Colon Cancer Cells Reveals Potential Therapy Targets
by Pengfei Li, Zhifang Hao, Huanhuan Liu, Bojing Zhu, Liuyi Dang, Chen Ma, Yintai Xu, Yiyan Zhang, Daidi Fan and Shisheng Sun
Biology 2021, 10(3), 250; https://doi.org/10.3390/biology10030250 - 23 Mar 2021
Cited by 15 | Viewed by 4374
Abstract
Colon cancer is one of the most lethal malignancies worldwide. Berberine has been found to exert potential anti-colon cancer activity in vitro and in vivo, although the detailed regulatory mechanism is still unclear. This study aims to identify the underlying crucial proteins and [...] Read more.
Colon cancer is one of the most lethal malignancies worldwide. Berberine has been found to exert potential anti-colon cancer activity in vitro and in vivo, although the detailed regulatory mechanism is still unclear. This study aims to identify the underlying crucial proteins and regulatory networks associated with berberine treatment of colon cancer by using proteomics as well as publicly available transcriptomics and tissue array data. Proteome profiling of berberine-treated colon cancer cells demonstrated that among 5130 identified proteins, the expression of 865 and 675 proteins were changed in berberine-treated HCT116 and DLD1 cells, respectively. Moreover, 54 differently expressed proteins that overlapped in both cell lines were mainly involved in mitochondrial protein synthesis, calcium mobilization, and metabolism of fat-soluble vitamins. Finally, GTPase ERAL1 and mitochondrial ribosomal proteins including MRPL11, 15, 30, 37, 40, and 52 were identified as hub proteins of berberine-treated colon cancer cells. These proteins have higher transcriptional and translational levels in colon tumor samples than that of colon normal samples, and were significantly down-regulated in berberine-treated colon cancer cells. Genetic dependency analysis showed that silencing the gene expression of seven hub proteins could inhibit the proliferation of colon cancer cells. This study sheds a light for elucidating the berberine-related regulatory signaling pathways in colon cancer, and suggests that ERAL1 and several mitochondrial ribosomal proteins might be promising therapeutic targets for colon cancer. Full article
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15 pages, 3023 KiB  
Article
Numerical and Experimental Investigations on Vocal Fold Approximation in Healthy and Simulated Unilateral Vocal Fold Paralysis
by Zheng Li, Azure Wilson, Lea Sayce, Amit Avhad, Bernard Rousseau and Haoxiang Luo
Appl. Sci. 2021, 11(4), 1817; https://doi.org/10.3390/app11041817 - 18 Feb 2021
Cited by 13 | Viewed by 6748
Abstract
We have developed a novel surgical/computational model for the investigation of unilat-eral vocal fold paralysis (UVFP) which will be used to inform future in silico approaches to improve surgical outcomes in type I thyroplasty. Healthy phonation (HP) was achieved using cricothyroid suture approximation [...] Read more.
We have developed a novel surgical/computational model for the investigation of unilat-eral vocal fold paralysis (UVFP) which will be used to inform future in silico approaches to improve surgical outcomes in type I thyroplasty. Healthy phonation (HP) was achieved using cricothyroid suture approximation on both sides of the larynx to generate symmetrical vocal fold closure. Following high-speed videoendoscopy (HSV) capture, sutures on the right side of the larynx were removed, partially releasing tension unilaterally and generating asymmetric vocal fold closure characteristic of UVFP (sUVFP condition). HSV revealed symmetric vibration in HP, while in sUVFP the sutured side demonstrated a higher frequency (10–11%). For the computational model, ex vivo magnetic resonance imaging (MRI) scans were captured at three configurations: non-approximated (NA), HP, and sUVFP. A finite-element method (FEM) model was built, in which cartilage displacements from the MRI images were used to prescribe the adduction, and the vocal fold deformation was simulated before the eigenmode calculation. The results showed that the frequency comparison between the two sides was consistent with observations from HSV. This alignment between the surgical and computational models supports the future application of these methods for the investigation of treatment for UVFP. Full article
(This article belongs to the Special Issue Computational Methods and Engineering Solutions to Voice II)
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21 pages, 11418 KiB  
Article
Detailed Assessment of the Effects of Meteorological Conditions on PM10 Concentrations in the Northeastern Part of the Czech Republic
by Vladimíra Volná and Daniel Hladký
Atmosphere 2020, 11(5), 497; https://doi.org/10.3390/atmos11050497 - 12 May 2020
Cited by 18 | Viewed by 3875
Abstract
This article assessed the links between PM10 pollution and meteorological conditions over the Czech-Polish border area at the Třinec-Kosmos and Věřňovice sites often burdened with high air pollution covering the years 2016–2019. For this purpose, the results of the measurements of special [...] Read more.
This article assessed the links between PM10 pollution and meteorological conditions over the Czech-Polish border area at the Třinec-Kosmos and Věřňovice sites often burdened with high air pollution covering the years 2016–2019. For this purpose, the results of the measurements of special systems (ceilometers) that monitor the atmospheric boundary layer were used in the analysis. Meteorological conditions, including the mixing layer height (MLH), undoubtedly influence the air pollution level. Combinations of meteorological conditions and their influence on PM10 concentrations also vary, depending on the pollution sources of a certain area and the geographical conditions of the monitoring site. Gen1erally, the worst dispersion conditions for the PM10 air pollution level occur at low air temperatures, low wind speed, and low height of the mixing layer along with a wind direction from areas with a higher accumulation of pollution sources. The average PM10 concentrations at temperatures below 1 °C reach the highest values on the occurrence of a mixing layer height of up to 400 m at both sites. The influence of a rising height of the mixing layer at temperatures below 1 °C on the average PM10 concentrations at Třinec-Kosmos site is not as significant as in the case of Věřňovice, where a difference of several tens of µg·m−3 in the average PM10 concentrations was observed between levels of up to 200 m and levels of 200–300 m. The average PM10 hourly concentrations at Třinec-Kosmos were the highest at wind speeds of up to 0.5 m·s−1, at MLH levels of up to almost 600 m; at Věřňovice, the influence of wind speeds of up to 2 m·s−1 was detected. Despite the fact that the most frequent PM10 contributions come to the Třinec-Kosmos site from the SE direction, the average maximum concentration contributions come from the W–N sectors at low wind speeds and MLHs of up to 400 m. In Věřňovice, regardless of the prevailing SW wind direction, sources in the NE–E sector from the site have a crucial influence on the air pollution level caused by PM10. Full article
(This article belongs to the Special Issue Ambient Air Quality in the Czech Republic)
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19 pages, 960 KiB  
Article
Global Proteome of LonP1+/− Mouse Embryonal Fibroblasts Reveals Impact on Respiratory Chain, but No Interdependence between Eral1 and Mitoribosomes
by Jana Key, Aneesha Kohli, Clea Bárcena, Carlos López-Otín, Juliana Heidler, Ilka Wittig and Georg Auburger
Int. J. Mol. Sci. 2019, 20(18), 4523; https://doi.org/10.3390/ijms20184523 - 12 Sep 2019
Cited by 15 | Viewed by 4253
Abstract
Research on healthy aging shows that lifespan reductions are often caused by mitochondrial dysfunction. Thus, it is very interesting that the deletion of mitochondrial matrix peptidase LonP1 was observed to abolish embryogenesis, while deletion of the mitochondrial matrix peptidase Caseinolytic Mitochondrial Matrix Peptidase [...] Read more.
Research on healthy aging shows that lifespan reductions are often caused by mitochondrial dysfunction. Thus, it is very interesting that the deletion of mitochondrial matrix peptidase LonP1 was observed to abolish embryogenesis, while deletion of the mitochondrial matrix peptidase Caseinolytic Mitochondrial Matrix Peptidase Proteolytic Subunit (ClpP) prolonged survival. To unveil the targets of each enzyme, we documented the global proteome of LonP1+/− mouse embryonal fibroblasts (MEF), for comparison with ClpP−/− depletion. Proteomic profiles of LonP1+/− MEF generated by label-free mass spectrometry were further processed with the STRING (Search tool for the retrieval of interacting genes) webserver Heidelberg for protein interactions. ClpP was previously reported to degrade Eral1 as a chaperone involved in mitoribosome assembly, so ClpP deficiency triggers the accumulation of mitoribosomal subunits and inefficient translation. LonP1+/− MEF also showed Eral1 accumulation, but no systematic effect on mitoribosomal subunits. In contrast to ClpP−/− profiles, several components of the respiratory complex-I membrane arm, of the glutathione pathway and of lysosomes were accumulated, whereas the upregulation of numerous innate immune defense components was similar. Overall, LonP1, as opposed to ClpP, appears to have no effect on translational machinery, instead it shows enhanced respiratory dysfunction; this agrees with reports on the human CODAS syndrome (syndrome with cerebral, ocular, dental, auricular, and skeletal anomalies) caused by LonP1 mutations. Full article
(This article belongs to the Special Issue Rhine-Main Neuroscience Network: rmn^2-Oberwesel 2018)
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