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22 pages, 1416 KB  
Article
Genotyping of Le and Af Haplotypes in Dry Pea (Pisum sativam L.) with Field Trials: Short and Semi-Leafless Plants Are Not Always Better in Kazakhstan
by Bauyrzhan Arinov, Gulmira Khassanova, Aray Zailasheva, Marzhan Kuzbakova, Kazhymurat Mussynov, Tatyana Sereda, Assemgul Kipshakbayeva, Satyvaldy Jatayev, Karakoz Tolenova, Crystal Sweetman, Colin L. D. Jenkins, Kathleen L. Soole and Yuri Shavrukov
Plants 2025, 14(22), 3479; https://doi.org/10.3390/plants14223479 - 14 Nov 2025
Abstract
Lodging of pea plants has long been one of the greatest problems encountered at harvest, but it can be avoided with reduced plant height (PH) and increased number of tendrils. Two genes, Le (stem length), Psat5g299720, for PH, and Af (Afila), [...] Read more.
Lodging of pea plants has long been one of the greatest problems encountered at harvest, but it can be avoided with reduced plant height (PH) and increased number of tendrils. Two genes, Le (stem length), Psat5g299720, for PH, and Af (Afila), Psat2g173360, for semi-leafless types with multiple tendrils, were studied in the 6 most popular pea cultivars in Kazakhstan and in 60 pea accessions from a germplasm collection. ASQ molecular markers were developed based on an identified SNP in the Le gene. Two groups of 41 tall and 25 short (semi-dwarf) pea plants with average PHs of 83.6 and 56.3 cm, respectively, showed dominant and recessive Le alleles. Nine haplotypes of Af gene were found in the same set of pea genotypes and the PsPALM1b (Psat2g173360) gene was present in 48 pea plants with regular-type leaves, but it was absent (deleted) in 18 afila-type peas. Seed yields were assessed in the six major pea cultivars in field trials in the Akmola and Karaganda regions of Northern and Central Kazakhstan, respectively, during 2024 and 2025. The short and semi-leafless pea genotypes showed better results in favourable and wet conditions in the Akmola region, whereas tall pea genotypes with regular leaf types were more productive in drought conditions, realising their potential in the Karaganda region. The results for 60 pea accessions in the same regions in 2025 followed a similar trend. Finally, we concluded that drought can influence the significance of the lodging problem in pea genotypes in Kazakhstan, where an earlier start and faster growth of taller plants with regular leaves can become much more important traits for better drought tolerance and seed production. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
30 pages, 1867 KB  
Review
Five-Hundred-Meter Aperture Spherical Radio Telescope (FAST): A Powerful Explorer of Exotic Pulsars
by Cheng-Min Zhang, Zhi-Yao Yang, Xiang-Han Cui, De-Hua Wang, Yi-Yan Yang, Xin-Ji Wu, Jian-Wei Zhang, Shu Ma, Yun-Gang Zhou and Lin-Yan Jiang
Universe 2025, 11(11), 378; https://doi.org/10.3390/universe11110378 - 14 Nov 2025
Abstract
Located in southern China, the five-hundred-meter aperture spherical radio telescope (FAST) is the world’s most sensitive radio telescope, especially for pulsar observation. Since its commissioning in 2016 and full operation in 2020, it has detected over 1100 new pulsars—boosting the globally known various [...] Read more.
Located in southern China, the five-hundred-meter aperture spherical radio telescope (FAST) is the world’s most sensitive radio telescope, especially for pulsar observation. Since its commissioning in 2016 and full operation in 2020, it has detected over 1100 new pulsars—boosting the globally known various pulsars to over 4000. In this concise overview, we highlight how harnessing FAST’s unique advantages—exceptional precision and ultra-high sensitivity—is set to fuel future discoveries of specialized pulsar types and exotic astrophysical objects. Notable targets include double millisecond pulsar binaries (MSP-MSPs), pulsar/millisecond pulsar–black hole systems (PSR-BHs or MSP-BHs), sub-millisecond pulsars, ultra-long-period pulsars, white dwarf pulsars, and short-orbit double neutron star systems (DNSs)—with orbital periods under one hour. As anticipated, in the 2040s, the combined capabilities of the FAST, the Square Kilometre Array (SKA), and other cutting-edge astronomical instruments will enable over 10,000 pulsar samples, which will usher in a golden era for pulsar research: such breakthroughs will not only significantly broaden and deepen our understanding of the “pulsar paradise” but also drive substantial progress in the field of multi-messenger astronomy. Beyond pulsar-focused research, FAST is poised to play a pivotal role in testing general relativity, detecting nanohertz gravitational waves, studying fast radio bursts (FRBs), and investigating the micro-structure of pulsar emissions. These investigations will not only strengthen our understanding of fundamental physics but also unlock deeper insights into the universe’s profound mysteries. Full article
(This article belongs to the Section Compact Objects)
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14 pages, 669 KB  
Article
Tycho Supernova Exploded Inside a Planetary Nebula (SNIP)
by Noam Soker
Universe 2025, 11(11), 377; https://doi.org/10.3390/universe11110377 - 13 Nov 2025
Abstract
I analyze recent X-ray data from the literature of the type Ia supernova remnant (SNR Ia) Tycho and conclude that Tycho is a SN Ia inside a planetary nebula (SNIP), strengthening such a previous suggestion from 1985. The observations reveal two opposite protrusions, [...] Read more.
I analyze recent X-ray data from the literature of the type Ia supernova remnant (SNR Ia) Tycho and conclude that Tycho is a SN Ia inside a planetary nebula (SNIP), strengthening such a previous suggestion from 1985. The observations reveal two opposite protrusions, termed ears, projected on the main shell of Tycho. The pair of ear structures qualitatively resembles that of the SNRs Ia Kepler, SNR G299-2.9, and SNR G1.9+0.3, which earlier studies considered as SNIPs. The requirement that the explosion occurs within hundreds of thousands of years after the formation of the planetary nebula (by the second star to evolve) makes the core-degenerate scenario the most likely for Tycho, with the double-degenerate with merger to explosion delay time scenario somewhat less likely. Several other possible scenarios lead to a SNIP, but they are unlikely for Tycho. The identification of Tycho as a SNIP leads to two general conclusions. (1) The fraction of SNIPs among normal SNe Ia is very large, ≈70–90%. Thus, the vast majority of normal SNe Ia are SNIPs. (2) To accommodate the large fraction of SNIPs, the delay time distribution of normal SNe Ia includes not only the stellar evolution timescale (as usually assumed), but also includes pockets of younger stellar populations in galaxies without ongoing star formation; the SNIPs come from the younger stellar populations in galaxies. Full article
(This article belongs to the Special Issue Exploring the Formation and Impact of Type Ia Supernovae)
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20 pages, 3653 KB  
Review
Insights into Asexual Propagation Techniques and Molecular Mechanisms Underlying Adventitious Root Formation in Apple Rootstocks
by Yanjing Gong, Muhammad Anees Arif, Xiaozhao Xu, Mingshan Lei, Jean Yves Uwamungu, Shuncai Wang and Hongming Wang
Horticulturae 2025, 11(11), 1366; https://doi.org/10.3390/horticulturae11111366 - 13 Nov 2025
Abstract
Apple represents one of the most economically significant fruit crops worldwide, and the performance of its scion is largely determined by the physiological and genetic characteristics of the rootstock. Despite their superior ecological adaptability and growth-controlling attributes, many dwarfing apple rootstocks exhibit inherently [...] Read more.
Apple represents one of the most economically significant fruit crops worldwide, and the performance of its scion is largely determined by the physiological and genetic characteristics of the rootstock. Despite their superior ecological adaptability and growth-controlling attributes, many dwarfing apple rootstocks exhibit inherently poor rooting competence, which poses a critical limitation to their large-scale clonal propagation and commercial utilization. Adventitious root (AR) formation is a pivotal yet highly intricate developmental process that governs the success of asexual propagation. It is orchestrated by a complex network of hormonal signaling, transcriptional regulation, metabolic reprogramming, and environmental cues. Over the past decade, remarkable advances have elucidated the physiological, biochemical, and molecular frameworks underpinning AR formation in apple rootstocks. This review provides an integrative synthesis of current progress in vegetative propagation techniques—including cutting, layering, and tissue culture—and systematically dissects the endogenous and exogenous factors influencing AR development. Particular emphasis is placed on the regulatory interplay among phytohormones, carbohydrate and nitrogen metabolism, phenolic compounds, transcription factors (such as WUSCHEL-RELATED HOMEOBOX (WOX), LATERAL ORGAN BOUNDARIES DOMAIN (LBD), and RESPONSE FACTOR (ARF families), and epigenetic modulators that collectively coordinate root induction and emergence. Furthermore, emerging insights into multi-omics integration and genotype-specific molecular regulation are discussed as strategic pathways toward enhancing propagation efficiency. Collectively, this review establishes a comprehensive theoretical framework for optimizing the asexual propagation of apple rootstocks and provides critical molecular guidance for breeding novel, easy-to-root genotypes that can drive the sustainable intensification of global apple production. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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27 pages, 10026 KB  
Article
Dynamical Friction Constraints on the Dark Matter Hypothesis Across Astronomical Scales
by Xavier Hernandez and Pavel Kroupa
Universe 2025, 11(11), 367; https://doi.org/10.3390/universe11110367 - 6 Nov 2025
Viewed by 309
Abstract
Dynamical friction implies a consistency check on any system where dark matter particles are hypothesised to explain orbital dynamics requiring more mass under Newtonian gravity than is directly detectable. Introducing the assumption of a dominant dark matter halo will also imply a decay [...] Read more.
Dynamical friction implies a consistency check on any system where dark matter particles are hypothesised to explain orbital dynamics requiring more mass under Newtonian gravity than is directly detectable. Introducing the assumption of a dominant dark matter halo will also imply a decay timescale for the orbits in question. A self-consistency constraint hence arises, such that the resulting orbital decay timescales must be longer than the lifetimes of the systems in question. While such constraints are often trivially passed, the combined dependencies of dynamical friction timescales on the mass and orbital radius of the orbital tracer and on the density and velocity dispersion of the assumed dark matter particles leads to the existence of a number of astronomical systems where such a consistency test is failed. Here, we review cases from stars in ultrafaint dwarf galaxies, galactic bars, satellite galaxies, and, particularly, the multi-period mutual orbits of the Magellanic Clouds, as recently inferred from the star formation histories of these two galaxies, as well as the nearby M81 group of galaxies, where introducing enough dark matter to explain observed kinematics leads to dynamical friction orbital decay timescales shorter than the lifetimes of the systems in question. Taken together, these observations exclude dark matter halos made of particles as plausible explanations for the observed kinematics of these systems. Full article
(This article belongs to the Section Galaxies and Clusters)
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29 pages, 16778 KB  
Article
Detecting Intermediate-Mass Black Holes out to 20 Mpc with ELT/HARMONI: The Case of FCC 119
by Hai N. Ngo, Dieu D. Nguyen, Tinh T. Q. Le, Tien H. T. Ho, Truong N. Nguyen and Trung H. Dang
Universe 2025, 11(11), 360; https://doi.org/10.3390/universe11110360 - 31 Oct 2025
Viewed by 319
Abstract
Intermediate-mass black holes (IMBHs; MBH1035 M) play a critical role in understanding the formation of supermassive black holes in the early universe. In this study, we expand on Nguyen et al.’s simulated measurements of [...] Read more.
Intermediate-mass black holes (IMBHs; MBH1035 M) play a critical role in understanding the formation of supermassive black holes in the early universe. In this study, we expand on Nguyen et al.’s simulated measurements of IMBH masses using stellar kinematics, which will be observed with the High Angular Resolution Monolithic Optical and Near-infrared Integral (HARMONI) field spectrograph on the Extremely Large Telescope (ELT) up to a distance of 20 Mpc. Our sample focuses on both the Virgo Cluster in the northern sky and the Fornax Cluster in the southern sky. We begin by identifying dwarf galaxies hosting nuclear star clusters, which are thought to be nurseries for IMBHs in the local universe. As a case study, we conduct simulations for FCC 119, the second faintest dwarf galaxy in the Fornax Cluster at 20 Mpc, which is also fainter than most of the Virgo Cluster members. We use the galaxy’s surface brightness profile from Hubble Space Telescope (HST) imaging, combined with an assumed synthetic spectrum, to create mock observations with the HSIM simulator and Jeans Anisotropic Models (JAMs). These mock HARMONI data cubes are analyzed as if they were real observations, employing JAMs within a Bayesian framework to infer IMBH masses and their associated uncertainties. We find that ELT/HARMONI can detect the stellar kinematic signature of an IMBH and accurately measure its mass for MBH105M out to distances of ∼20 Mpc. Full article
(This article belongs to the Special Issue Supermassive Black Hole Mass Measurements)
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25 pages, 4866 KB  
Article
Integrated Metabolomic and Transcriptomic Analysis Reveals the Roles of Cutin, Suberin, and Flavonoid Metabolism in Apple Peel Deterioration Under Non-Bagging Cultivation
by Guiping Wang, Huifeng Li, Ru Chen, Xueping Han and Xiaomin Xue
Plants 2025, 14(21), 3339; https://doi.org/10.3390/plants14213339 - 31 Oct 2025
Viewed by 392
Abstract
Non-bagging apple cultivation, which is time-saving, labor-saving, and cost-effective, represents the future direction of apple cultivation in China. However, compared with bagging cultivation, it degrades fruit appearance quality, characterized by rough peels and dull colors, with the underlying physiological and molecular mechanisms remaining [...] Read more.
Non-bagging apple cultivation, which is time-saving, labor-saving, and cost-effective, represents the future direction of apple cultivation in China. However, compared with bagging cultivation, it degrades fruit appearance quality, characterized by rough peels and dull colors, with the underlying physiological and molecular mechanisms remaining unclear. This study used ‘Tianhong 2’ Fuji apples, grafted onto SH dwarfing rootstock, and integrated transcriptomics–metabolomics to explore these mechanisms. Results showed that non-bagging-cultivated apple peels had higher chlorophyll and carotenoid contents but lower anthocyanin content than those of bagging-cultivated ones. Transcriptome sequencing identified 1571 differentially expressed genes (DEGs: 1269 upregulated, 302 downregulated). Functional analysis revealed that the decline in fruit appearance quality was primarily associated with secondary metabolite biosynthesis, lipid metabolism, and carbohydrate metabolism, and 34 candidate genes were identified. Metabolomic analysis detected 394 differentially expressed metabolites (DEMs), 38 of which were closely related to the non-bagging-induced appearance degradation, mainly lipids, organic oxygen compounds, and organic acids and their derivatives. Integrated analysis of DEGs and DEMs indicated the involvement of multiple critical metabolic pathways, including cutin, suberin and wax biosynthesis; starch and sucrose metabolism; cyanoamino acid metabolism; and phenylpropanoid and flavonoid biosynthesis. Compared with bagging-cultivated apples, non-bagging-cultivated apples exhibited faster starch degradation and higher soluble sugar accumulation. Additionally, the accumulation of specific metabolites [e.g., quercetin (HMDB0005794, HMDB03249, LMPK12112097), and suberin components (LMFA01170020, LMFA01050437, HMDB0031885)], along with elevated organic acid levels, contributed to peel roughness and dull coloration. These findings further enrich the theoretical basis for the formation of fruit quality in Fuji apples under non-bagging cultivation and provide valuable theoretical guidance for the practical application of this cultivation mode. Full article
(This article belongs to the Section Horticultural Science and Ornamental Plants)
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11 pages, 340 KB  
Article
EZ Lyn: A Confirmed Period-Bouncer Cataclysmic Variable Below the Period Minimum
by Nadezhda L. Vaidman, Almansur T. Agishev, Serik A. Khokhlov and Aldiyar T. Agishev
Galaxies 2025, 13(6), 121; https://doi.org/10.3390/galaxies13060121 - 30 Oct 2025
Viewed by 275
Abstract
We model the short-period cataclysmic variable EZ Lyn with MESA binary evolution and infer its present-day parameters through a staged statistical search. First, we compute a coarse grid of tracks in (M1,0,P0) at fixed [...] Read more.
We model the short-period cataclysmic variable EZ Lyn with MESA binary evolution and infer its present-day parameters through a staged statistical search. First, we compute a coarse grid of tracks in (M1,0,P0) at fixed M2,0 and rank snapshots by a profile likelihood. We then resample the neighbourhood of the minimum to build a refined Δχ2 surface. Finally, we sample this surface with an affine-invariant MCMC to obtain posteriors, using a likelihood that treats the one-sided constraint on the donor temperature and the ambiguity of component roles in the binary output. The best-fit snapshot reproduces the observables and identifies EZ Lyn as a period bouncer with a substellar donor. We infer MWD=0.850±0.019M, M2=0.0483±0.0137M, RWD=0.0092±0.0001R, R2=0.099±0.005R, TWD=11,500±20K, and T2=1600±50K. The instantaneous mass-transfer rate at the best-fit snapshot is M˙=3.66×1011Myr1, consistent with the secular range implied by the white-dwarf temperature. Independent checks from the Roche mean-density relation, surface gravities, and the semi-empirical donor sequence support the solution. In population context, EZ Lyn lies in the period-minimum spike and on the low-mass tail of the donor mass–period plane. The classification is robust to modest displacements along the shallow Δχ2 valley. We release inlists, tracks, and analysis scripts for reproducibility. Full article
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17 pages, 10808 KB  
Article
Integrated Transcriptomic and Metabolomic Profiling of Paclobutrazol-Induced Dwarfism in Tomato Epicotyls
by Junqi Wang, Jinzhe Li, Changxin Xiao, Yingbin Qi, Bing Bai, Xia Cao, Xiujie Mao, Chuncheng Wu, Qun Liu, Mingjia Tang and Ning Zhang
Plants 2025, 14(21), 3311; https://doi.org/10.3390/plants14213311 - 30 Oct 2025
Viewed by 336
Abstract
Tomato (Solanum lycopersicum L.) seedlings are prone to excessive growth in summer, especially severe overgrowth of the embryo axis. Paclobutrazol is a plant growth inhibitor that regulates the balance of hormones in plants and delays their growth. In this study, 200 mg·L [...] Read more.
Tomato (Solanum lycopersicum L.) seedlings are prone to excessive growth in summer, especially severe overgrowth of the embryo axis. Paclobutrazol is a plant growth inhibitor that regulates the balance of hormones in plants and delays their growth. In this study, 200 mg·L−1 paclobutrazol was sprayed onto highly homozygous inbred strain DH tomato seedlings at the two-leaf stage, which led to a significant reduction in the length of the epicotyl, an increase in the number of cells, a close cell arrangement, and a reduction in cell size. To study the mechanism by which paclobutrazol dwarfs the epicotyl of tomatoes, we utilized a combined analysis of the transcriptome and metabolome to identify potential candidate genes and regulatory pathways. The results revealed that after paclobutrazol treatment, both the flavonoid and phenylpropanoid biosynthesis pathways were jointly annotated. In addition, plant hormones and sucrose metabolism pathways were also discovered using transcriptome analysis. Xyloglucan endotransglucosylase/hydrolases (XTHs), small auxin-up RNAs (SAURs) and invertase family-related genes were detected, which can serve as key candidate genes for the subsequent analysis of epicotyl dwarfism in tomato plants. These results provide a framework for understanding the metabolic processes underlying epicotyl dwarfism and a foundation for preventing tomato seedling overgrowth. Full article
(This article belongs to the Special Issue Insights and Regulation of Plant Growth and Metabolism)
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16 pages, 630 KB  
Article
Identifying Companions in Pulsar Binary Systems via Gaia Data
by Yueqi Song, Li Guo, Zhen Yan, Qiqi Wu, Guangli Wang and Ying Wang
Universe 2025, 11(11), 358; https://doi.org/10.3390/universe11110358 - 28 Oct 2025
Viewed by 254
Abstract
In the optical band, very few pulsars can be directly detected, but some of the pulsar binary companions can be observed. This study leverages high-precision astrometric data from Gaia Data Release 3 (DR3) to identify pulsar companions in binary systems. Cross-matching the Australia [...] Read more.
In the optical band, very few pulsars can be directly detected, but some of the pulsar binary companions can be observed. This study leverages high-precision astrometric data from Gaia Data Release 3 (DR3) to identify pulsar companions in binary systems. Cross-matching the Australia Telescope National Facility (ATNF) Pulsar Catalogue with Gaia DR3 yielded 58 astrometric pairs, including 9 newly confirmed companions—primarily in the southern hemisphere—expanding the known pulsar distribution there. Among newly confirmed companions, eight are redback pulsars, offering insights into millisecond pulsar evolution and companion composition. All 58 companions are classified as main-sequence stars, neutron stars, white dwarfs, or ultra-light companion stars, with ∼40% being spider pulsars. Gaia’s exceptional astrometric precision advances pulsar studies, enabling gravitational wave detection via Pulsar Timing Arrays (PTAs) and improved reference frame link. Future multi-wavelength research will benefit from Gaia DR4, International Pulsar Timing Array (IPTA) collaborations (including Five-hundred-meter Aperture Spherical radio Telescope (FAST)), and Very Long Baseline Interferometry (VLBI) networks like the Chinese VLBI Network (CVN). Full article
(This article belongs to the Section Compact Objects)
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13 pages, 2398 KB  
Article
Occurrence and Molecular Characteristics of Polerovirus BVG Isolates from Poland
by Katarzyna Trzmiel, Aleksandra Zarzyńska-Nowak and Beata Hasiów-Jaroszewska
Pathogens 2025, 14(11), 1087; https://doi.org/10.3390/pathogens14111087 - 24 Oct 2025
Viewed by 552
Abstract
Barley virus G (BVG), the species Polerovirus BVG, within the genus Polerovirus in the family Solemoviridae, represents a new threat to cereal crops in Poland. It was first identified in 2022–2023 using high-throughput sequencing in pooled barley samples exhibiting leaf yellowing and [...] Read more.
Barley virus G (BVG), the species Polerovirus BVG, within the genus Polerovirus in the family Solemoviridae, represents a new threat to cereal crops in Poland. It was first identified in 2022–2023 using high-throughput sequencing in pooled barley samples exhibiting leaf yellowing and stunting symptoms. The presence of BVG was subsequently confirmed by RT-PCR using diagnostic primers described in the literature. A nucleotide BLAST search of the NCBI database revealed sequence identity ranged from 97.8% to 100%. The final results demonstrated mixed infections involving BVG and luteovirus pashordei, formerly barley yellow dwarf virus—PAS (BYDV-PAS). In 2023–2024, BVG was detected in four additional locations across western, southern, south-eastern, and eastern Poland. The virus was found in co-infection with BYDV-PAS in barley and oat, and with mastrevirus hordei, formerly wheat dwarf virus (WDV) in wheat. Due to the mixed nature of BVG infections, a set of total RNA samples previously isolated from BYDV-infected plants was reanalyzed. RT-PCR results confirmed BVG/BYDV-PAS co-infections in samples collected in 2014–2015, 2018–2019, and 2020–2021. These findings indicate that BVG has been present in Poland for at least 10 years. Molecular characteristics were assessed based on the coat protein gene sequence. Full article
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22 pages, 1103 KB  
Review
Dwarf Galaxies in Focus: A Survey of Observational and Theoretical Studies
by Komiljon Tillaboev, Ikram Tadjibaev, Kamolidin Mamadaliyev, Dildor Otajonova, Malokhat Atajonova and Bagzodbek Abdullayev
Galaxies 2025, 13(5), 117; https://doi.org/10.3390/galaxies13050117 - 21 Oct 2025
Viewed by 716
Abstract
This paper presents provides a comprehensive survey of dwarf galaxies, which represent the most numerous and diverse systems in the Universe. We discuss their definitions and morphological classifications, emphasizing the unique properties that distinguish them from globular clusters and giant galaxies. Special attention [...] Read more.
This paper presents provides a comprehensive survey of dwarf galaxies, which represent the most numerous and diverse systems in the Universe. We discuss their definitions and morphological classifications, emphasizing the unique properties that distinguish them from globular clusters and giant galaxies. Special attention is given to their formation and evolutionary processes in the framework of hierarchical structure formation and ΛCDM cosmology, including the role of environmental mechanisms and stellar feedback. Star formation histories are explored based on observations and simulations, highlighting both bursty and extended activity across different dwarf types. We further examine the crucial role of dark matter in shaping the dynamics and structure of dwarf galaxies, as well as the core–cusp and missing satellites problems. Finally, we summarize insights from numerical simulations and theoretical models, which provide a bridge between observations and cosmological predictions. This synthesis demonstrates that dwarf galaxies remain essential laboratories for testing galaxy formation theories and probing the nature of dark matter. Full article
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19 pages, 3283 KB  
Article
The Phytohormone Signaling Pathway and Immunity Responses to BYDV Infection in Resistant and Susceptible Oat Cultivars
by Jikuan Chai, Kuiju Niu, Panpan Huang, Wenlong Gong, Yuehua Zhang, Zeliang Ju and Guiqin Zhao
Plants 2025, 14(20), 3229; https://doi.org/10.3390/plants14203229 - 21 Oct 2025
Viewed by 453
Abstract
Oat (Avena sativa L.) is a vital cereal and feed crop grown worldwide, but its production is increasingly threatened by barley yellow dwarf virus (BYDV) and aphid infestations in arid and semi-arid regions, particularly in northern China. This study explores the transcriptomic [...] Read more.
Oat (Avena sativa L.) is a vital cereal and feed crop grown worldwide, but its production is increasingly threatened by barley yellow dwarf virus (BYDV) and aphid infestations in arid and semi-arid regions, particularly in northern China. This study explores the transcriptomic and physiological responses of two oat cultivars MN10253 (resistant) and Qingyin 1 (susceptible) to BYDV at 0, 2, 8, 24, and 48 h post-infection. A combination of phytohormone profiling, differential gene expression analysis, and pathway enrichment was employed to identify mechanisms underpinning disease resistance. Comparative time-course transcriptome analysis revealed 9285 and 8904 differentially expressed genes (DEGs) in MN10253 and Qingyin 1, respectively. Key pathways such as MAPK signaling, plant–pathogen interaction, and hormone signal transduction were significantly enriched. The resistant cultivar exhibited robust activation of pattern-triggered immunity and effector-triggered immunity pathways, marked by upregulation of genes like RPS2, HSP90, and WRKY33, alongside higher expression of salicylic acid (SA)-responsive genes, such as NPR1 and PAL. Conversely, the susceptible cultivar displayed weaker or delayed activation of these defense pathways. Hormonal analysis further demonstrated higher SA accumulation in MN10253 during early infection, correlating with enhanced defense responses. In contrast, Qingyin 1 showed elevated levels of auxin and abscisic acid, which are linked to suppressed immunity. This study underscores the central role of immunity responses and phytohormone pathways in mediating oat resistance to BYDV, highlighting the tradeoff between growth and defense modulated by hormonal crosstalk. These findings advance our understanding of host–pathogen dynamics in oats and provide valuable insights for breeding disease-resistant cultivars. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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20 pages, 2321 KB  
Article
Holocene Paleoenvironmental Reconstruction at 47° S (Patagonia, Argentina) from Sedimentary Sequences (Fens and Lagoon) and Archaeological Sites: A Regional Synthesis
by Maria A. Marcos, Florencia P. Bamonte and Marcos E. Echeverria
Foss. Stud. 2025, 3(4), 15; https://doi.org/10.3390/fossils3040015 - 19 Oct 2025
Viewed by 357
Abstract
At 47° S in Argentine Patagonia, the interaction between the Southern Westerly Winds (SWW) and the Andean barrier generates a steep climatic gradient, providing an ideal setting to evaluate Holocene vegetation responses. This study focuses on the extra-Andean sector, where new pollen records [...] Read more.
At 47° S in Argentine Patagonia, the interaction between the Southern Westerly Winds (SWW) and the Andean barrier generates a steep climatic gradient, providing an ideal setting to evaluate Holocene vegetation responses. This study focuses on the extra-Andean sector, where new pollen records from La Tapera (LTap) and Cisne 7 provide insights into steppe vegetation dynamics under dry conditions. These sequences are contrasted with previously studied records further west (LF, ZB, CMN1, CMN2, and COCU) to assess west–east gradients in vegetation change and moisture availability throughout the Holocene. Western records indicate that the Early Holocene was dominated by grass–dwarf-shrub steppe under arid conditions, followed by increased humidity around 7600 cal yr BP that promoted the development of forest–steppe ecotonal environments. The Middle Holocene was characterised by aridity, reflected in shrub dominance and reduced forest signals, whereas the Late Holocene included a humid pulse between ~1750 and 1000 cal yr BP, followed by renewed aridity over the last millennium. In contrast, eastern records show persistent shrub–dwarf-shrub steppes since ~4700 cal yr BP, with vegetation changes expressed mainly as shifts in the relative dominance of shrubs and dwarf–shrubs rather than floristic replacements. Archaeological sites corroborated and complemented the continuous records, strengthening the reconstruction of environmental variability across different temporal windows. Overall, this west–east comparison highlights the differential sensitivity of ecosystems to SWW fluctuations, reinforcing their role as an important forcing of hydrological balance and vegetation dynamics in mid-latitude Patagonia. Full article
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11 pages, 1762 KB  
Article
Genetic Dissection of Plant Height Variation Between the Parental Lines of the Elite Japonica Hybrid Rice ‘Shenyou 26’
by Bin Sun, Xiaorui Ding, Kaizhen Xie, Xueqing Zhang, Can Cheng, Yuting Dai, Anpeng Zhang, Jihua Zhou, Fuan Niu, Rongjian Tu, Yue Qiu, Zhizun Feng, Bilian Hu, Chenbing Shao, Hongyu Li, Tianxing Shen, Liming Cao and Huangwei Chu
Int. J. Mol. Sci. 2025, 26(20), 10155; https://doi.org/10.3390/ijms262010155 - 18 Oct 2025
Viewed by 304
Abstract
Plant height is a key agronomic trait influencing both seed production and yield in hybrid rice. In the elite japonica hybrid ‘Shenyou 26’, optimal plant height differences between the restorer line (‘Shenhui 26’) and the male sterile line (‘Shen 9A’) are critical for [...] Read more.
Plant height is a key agronomic trait influencing both seed production and yield in hybrid rice. In the elite japonica hybrid ‘Shenyou 26’, optimal plant height differences between the restorer line (‘Shenhui 26’) and the male sterile line (‘Shen 9A’) are critical for efficient pollination. In this study, we dissected the genetic basis of plant height variation using a doubled haploid (DH) population derived from ‘Shenyou 26’. Multi-environment phenotyping and QTL mapping identified seven QTLs associated with plant height, among which qPH1.1 and qPH9.1 were validated. qPH1.1 co-localized with the semi-dwarf gene SD1, and ‘Shen 9A’ carries a rare SD1-EQH allele that potentially confers reduced height relative to the SD1-EQ allele in ‘Shenhui 26’. qPH9.1 also contributed significantly to plant height variation, with the Shenhui26 allele increasing plant height in backcross validation. These findings indicate that plant height variation in ‘Shenyou 26’ is controlled by multiple loci, including SD1 allelic variants and other complementary QTLs, providing valuable resources for fine-tuning plant architecture in rice breeding. Full article
(This article belongs to the Special Issue Rice Molecular Breeding and Genetics: 3rd Edition)
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