Search Results (450)

Semiconductor lasers have been widely employed in chaos-based information processing due to their ability to generate enhanced chaotic bandwidths. In this study, we investigate broadband polarization chaos in optically injected QD spin-VCSELs and their ability to act as high-speed physical entropy sources for random number generation (RNG). We achieve chaotic bandwidths approaching 50 GHz per polarization mode using elliptical injection. With optimized conditions and post-processing, we demonstrate RNG at rates of up to 240 Gb/s. The quality of the generated random sequences is evaluated using multiple statistical metrics, including entropy estimation based on the NIST SP800-90B framework, uniqueness analysis using Hamming distance, and bias assessment through autocorrelation and histogram analysis. In addition, the influence of different polarization injection schemes on randomness is examined using the NIST SP800-22 statistical test suite. These results highlight the potential of QD spin-VCSELs as compact and ultrafast sources for RNG in secure communication systems. Full article

Aiming to clarify the spatial distribution characteristics of soil microbial assemblages and the environmental factors shaping them across a narrow altitudinal transect, this investigation concentrated on the surface soil layer within naturally occurring mixed forests of Picea crassifolia and Betula platyphylla, situated in the elevation band from 2400 to 2800 m along the southern flank of the Qilian Mountains. Leveraging the Illumina NextSeq 2000 high-throughput sequencing platform, integrated with α- and β-diversity analyses and redundancy analysis (RDA), we systematically characterized the composition and diversity traits of soil bacterial and fungal communities, as well as their associations with environmental factors. Notably, the bacterial communities were dominated by Pseudomonadota, Actinomycetota, and Acidobacteria with the abundance of Pseudomonadota decreasing with increasing altitude and that of Acidobacteria increasing with increasing altitude. Furthermore, Ascomycota and Basidiomycota were the dominant phyla in the fungal community. In contrast, bacterial α-diversity—as estimated by the Ace index—showed no significant variation across altitudes. Yet, the fungal alpha diversity metrics—namely Ace and Chao1—were markedly elevated at the 2800 m elevation relative to those observed at both intermediate and lower-altitude locations. Importantly, fungal diversity and community composition showed stronger altitudinal differentiation than bacterial communities in this dataset. Moreover, soil pH, total phosphorus, organic carbon, litter C:N:P stoichiometric ratios, and microbial biomass C:N:P stoichiometric ratios were strongly associated with soil microbial community variation along the altitude gradient, suggesting that they may act as important environmental filters. In conclusion, altitude-driven variations in litter characteristics and soil physicochemical properties jointly shape the assembly processes and spatial distribution patterns of soil microbial communities in this region. Full article

Rice–crab coculture, as China’s third-largest integrated farming model, is pivotal for sustainable Chinese mitten crab aquaculture. This study conducted untargeted metabolomics and 16S rRNA gene sequencing on gut contents of crabs from rice fields and ponds, integrating metabolic and microbial profiles. We aimed to reveal the chemical traits of rice-field Chinese mitten crab linked to gut microbiota, providing scientific guidance for optimizing culture practices and developing microbial additives. Both groups were dominated by the phyla Firmicutes, Proteobacteria, and Bacteroidota, but the phylum Bdellovibrionota was not detected in group R. A total of 1271 distinct amplicon sequence variants (ASVs) were identified, which were annotated to 649 genera. At the ASV level, the Chao1 index for the R group (197.12 ± 17.88) was notably lower compared to the P group (288.75 ± 30.59) (p < 0.01). In contrast, the Shannon index for the R group (3.90 ± 0.06) was significantly greater than that of the P group (3.70 ± 0.06) (p < 0.01). The PCA plot demonstrated a distinct discrimination between the groups. The P group had more microbial species but was dominated by Candidatus_Bacilloplasma, resulting in uneven distribution. In contrast, the R group had fewer species but a more balanced distribution. Among 3531 metabolites identified in both groups, 865 differed significantly. Compared to P, 736 metabolites were significantly upregulated and 129 were significantly downregulated in R. Key metabolic pathways included amino acid, carbohydrate, cofactor and vitamin metabolism, signaling, and xenobiotics biodegradation. Group R had higher levels of L-leucine, L-phenylalanine, L-tyrosine, 2-amino-1-phenylethanol, choline, and pyrophaeophorbide a, which correlated with genera like Candidatus_Hepatoplasma and Aeromonas (p < 0.05), suggesting better nutritional value, flavor, and metabolic health in rice-field crabs. Full article

To characterize the ecological and genomic architecture of temperate bacteriophages in Escherichia coli isolated from Brazilian broiler chickens, we analyzed 63 femur-derived genomes, most fulfilling molecular avian pathogenic E. coli (APEC) criteria, and tested whether temperate phage regions are enriched for antimicrobial resistance genes (ARGs), virulence factors, plasmid markers, and other mobilome components. Diversity was summarized using incidence-based richness estimators and bootstrap confidence intervals, and positional enrichment was assessed using permutation-based statistical analysis. We detected 1164 phage-like elements, including 188 medium- and high-quality phages, of which 93.6% were temperate. Median temperate diversity per genome was three phage genera and three temperate regions. At the population level, 19 temperate genera were observed, with a Chao2 estimate of 21.2, indicating near-saturated genus-level diversity. Positional mobilome analysis showed significant enrichment of insertion sequences within temperate regions (p < 0.05), while ARGs, virulence factors, and plasmid markers were not significantly enriched inside temperate phage coordinates (p > 0.05). The surrounding genomic neighborhood (±20 kb) accumulated mobile elements but showed no significant enrichment. CRISPR spacer matches further supported ongoing host–phage interactions. Overall, temperate phages are widespread and ecologically structured in Brazilian broiler-associated E. coli, but they are not preferential hotspots for ARG, virulence, or plasmid gene enrichment; instead, they are chiefly associated with insertion-sequence enrichment. Full article

Basal cell carcinoma (BCC) is the most common malignancy worldwide, yet the role of the skin microbiome in BCC remains poorly defined. In this cross-sectional observational case series, we compared the cutaneous microbiome of BCC lesions with matched perilesional and control skin using whole-genome shotgun sequencing in an intra-patient, multi-site sampling design. BCC samples demonstrated reduced microbial richness and significant shifts in community composition compared with matched control skin. Specifically, BCC lesions exhibited significantly lower Chao1 diversity (β = −484.6, 95% CI: −772.1 to −197.2, p = 0.003). Differences in overall microbial composition were confirmed by PERMANOVA analysis based on Bray–Curtis and Jaccard distance metrics (R² = 12.6% and 9.7%, respectively; both p = 0.01). At the species level, Cutibacterium acnes was significantly reduced in BCC samples compared with controls (β = −0.31, 95% CI: −0.45 to −0.16, p = 0.0004), corresponding to an approximately 27% lower geometric mean relative abundance. Functional profiling suggested shifts in microbial metabolic potential, with pathways related to redox balance and lipid-associated processes differentially represented in BCC samples relative to controls. Together, these findings demonstrate that BCC lesions are associated with localized alterations in microbial diversity, community composition, and inferred functional potential. These results support the presence of a tumor-associated microbiome signature in BCC; however, further studies in larger and more diverse cohorts are needed to determine whether these changes contribute to tumor development or reflect adaptation to the tumor microenvironment. Full article

Sunflower (Helianthus annuus L.) production is severely hindered by continuous cropping obstacles, leading to soil degradation and significant yield declines. This study compared soybean–sunflower (G-H) and maize–sunflower (Z-H) rotations against sunflower monoculture (H-H) to elucidate the mechanisms of soil health restoration associated with crop rotation. Our results demonstrated that Z-H and G-H rotations led to a profound yield increase of 103.19% and 82.35%, respectively, with Z-H improving the 100-grain weight by 52.63%. Soil biological revitalization was evidenced by a 98.29% increase in sucrase activity and a 28.92% rise in alkaline phosphatase activity. Metagenomic analysis revealed that the rotation sequences increased bacterial Chao1 richness by 35.29% and fungal Shannon diversity by 20.17%. Specifically, the rotation treatments proactively recruited beneficial taxa such as Pontibacter (Log₂FC > 3.0) and Panaeolus (Log₂FC = 6.88), while effectively suppressing pathogens such as Ceratobasidiaceae. Co-occurrence network analysis identified a complex bacterial scaffold (199 nodes, 53 modules) that provided greater structural robustness than the fungal network (27 nodes). It is concluded that diversified rotations effectively mitigate continuous cropping obstacles by reactivating nutrient cycling and restructuring the rhizosphere into a stable, modular microbial interactome. This study provides a quantitative framework for utilizing biological strategies to restore soil health in degraded agroecosystems. Full article

Background/Objectives: Low-fishmeal diets are widely adopted to improve sustainability in shrimp aquaculture, yet reduced palatability and metabolic stress frequently suppress feed intake and growth. We evaluated whether a crayfish (Procambarus clarkii) by-product protein hydrolysate (CBPH) could mitigate low-fishmeal-induced performance losses by modulating feeding-related metabolic signaling and gut microbiota features in Pacific white shrimp (Litopenaeus vannamei). Methods: In an 8-week feeding trial, 360 juveniles (initial body weight 0.46 g) were assigned to three diets (four replicates per diet): a commercial control (CON), a low-fishmeal diet (LFM), and LFM supplemented with 2% CBPH (CBPH). Growth, feed utilization, whole-body composition, hemolymph biochemical indices (TP, TG, GLU, AST, ALT), intestinal appetite-related gene expression (5-HTR, CART, CCK1R, D2-like, NPY), and intestinal microbiota profiles (full-length 16S rRNA sequencing, V1–V9, PacBio) were assessed. Results: Compared with the LFM group, CBPH supplementation increased feed intake and improved feed conversion, restoring final body weight and growth rates to levels comparable to CON. CBPH also alleviated low-fishmeal-associated metabolic stress, including reduced AST and ALT activities and lower glucose levels. The LFM diet induced upregulation of anorexigenic genes (5-HTR, CART, D2-like) and downregulation of NPY in the shrimp intestine, whereas CBPH supplementation reversed these transcriptional changes. In addition, microbiota richness indices (ACE and Chao1) were elevated by CBPH relative to LFM, accompanied by compositional shifts at the phylum and genus levels. Conclusions: CBPH effectively alleviated low-fishmeal-induced reductions in feeding and growth, accompanied by coordinated changes in feeding-related gene expression, systemic biochemical markers, and gut microbiota composition, supporting its potential as a functional ingredient to stabilize metabolic responses in low-fishmeal shrimp feeds. Full article

This study aims to investigate the effects of low-energy diets (LE) supplemented with Lactobacillus reuteri postbiotics (HSY) on growth performance and intestinal health of broiler chickens. A total of 2400 one-day-old Ross 308 broiler chicks with an average initial body weight of 46.10 ± 0.04 g were randomly assigned to a 2 × 2 factorial arrangement of treatments with 12 pens and 50 broiler chickens/pen for 39 days. Treatments were (1) CTR (basal diet), (2) LE (CTR-70 kcal ME/kg), (3) HSY (CTR + 0.5 kg/t HSY), and (4) LEHSY (LE + 0.5 kg/t HSY). LE increased the feed conversion ratio (FCR) of broilers (p = 0.03) without altering ADG, ADFI, and final BW. Supplementation with HSY significantly reduced the FCR of broilers (p = 0.001). HSY upregulated the activities of amylase and trypsin in jejunal digesta (p < 0.01). Furthermore, LE upregulated the expression of intestinal barrier-related genes such as Mucin-2, Claudin-1 and Occludin, and HSY upregulated the expression of Claudin-1 (p < 0.05). LE upregulated the expression of nutrient transport carriers such as SGLT1 and TRPV6 (p < 0.01), and HSY upregulated the expression of TRPV6 (p < 0.01). LE upregulated the expression of immune-related genes such as MHC-II (p = 0.002), and HSY upregulated the expression of IFN-γ, IL-10, and TGF-β (p < 0.05). LE and HSY both downregulated the expression of intestinal lipid metabolism-related genes like ACC, while upregulating the expression of FABP4 (p < 0.05). 16S rRNA sequencing showed that the HSY increased the Chao1 index of the jejunal microbiota and enriched beneficial bacteria such as Lactobacillus salivarius and Lactobacillus avium. LE and HSY both increased the concentrations of propionic and butyrate (p < 0.05). In summary, HSY can improve gut health and mitigate the negative impact of low-energy treatment on broiler growth performance by increasing the content of endogenous enzymes in the jejunum, improving gut microbiota structure, and increasing the content of short-chain fatty acids in the jejunum. Full article

Lycium ruthenicum is a typical desert halophyte with strong stress resistance and high medicinal value in the Tarim Basin. Root endophytic microbes play critical roles in host adaptation, nutrient cycling, and secondary metabolite accumulation. To clarify the diversity patterns of root endophytic bacteria and fungi and their relationships with environmental factors and fruit quality, high-throughput sequencing was used to analyze microbial community characteristics of Lycium ruthenicum collected from different habitats in the Tarim Basin. The results showed that rarefaction curves of alpha diversity indices (Chao1, Shannon, Pielou_e) tended to be saturated, indicating sufficient sequencing depth. Principal coordinate analysis (PCoA) revealed significant habitat-driven differentiation in both bacterial and fungal community structures. Community composition analysis showed that the relative abundance of dominant taxa at the phylum and genus levels differed significantly among sampling sites. Co-occurrence network analysis indicated that bacterial and fungal networks exhibited high modularity and were dominated by positive synergistic interactions, with Pseudomonas, Bacillus, Sphingomonas, Alternaria, and Fusarium as key hub genera. Moreover, root endophytic communities were significantly correlated with climatic variables, soil physicochemical properties, and fruit quality traits, including anthocyanin (AC), proanthocyanidin (PA), total flavonoids (TF), and total polyphenols (TP). Several keystone microbial genera were closely associated with the accumulation of functional metabolites in fruits. This study reveals the biogeographic distribution and co-occurrence characteristics of root endophytes in Lycium ruthenicum and provides a theoretical basis for understanding microbe–host–environment interactions and the quality improvement of desert medicinal plants. Full article

This paper presents the design and multi-domain evaluation of three chaos-based excitation strategies for brushless DC (BLDC) motor drives implemented using Chua circuit-generated deterministic chaotic signals injected at three distinct control points: the PWM duty cycle, the commutation sequence, and the current feedback loop. A systematic design methodology is established for each injection architecture, including signal normalization, amplitude parameterization, and injection point characterization, evaluated across the electromagnetic, thermal, mechanical, and acoustic domains through MATLAB (R2024a) simulation and physical test stand validation. PWM injection produces controlled spectral dispersion with 5–7% speed reduction and a 10–15 dB SNR decrease, making it the recommended design choice for acoustic signature masking in stealth UAV applications. Commutation injection achieves severe system destabilization with speed reduction exceeding 56% and SNR losses greater than 30 dB, establishing it as a design tool for accelerated stress testing and fault emulation. Current feedback injection delivers a balanced excitation profile with 12–20% efficiency loss and 16–30% SNR reduction, making it suitable as a design method for online parameter identification and adaptive control development. This study establishes the first multi-domain comparative design framework for application-specific selection of chaos excitation strategies in BLDC drives, supported by nonparametric statistical validation and experimental acoustic confirmation, providing drive engineers with quantitative selection criteria across four physical domains. Full article

Idesia polycarpa ‘Yitong 2’ is a high-oil cultivar widely promoted in central China, yet field evidence on how soil bacterial communities respond during early plantation establishment remains limited. Here, we conducted fixed-site monitoring in a newly established ‘Yitong 2’ plantation in the Luohe River Basin (Henan, China). Bulk soil (0–30 cm) was collected before planting (March 2024) and at 3, 6 and 12 months after planting (June 2024, September 2024 and March 2025). Soil physicochemical properties were measured and bacterial communities were profiled by 16S rRNA gene (V3–V4) amplicon sequencing; functional potential was inferred using PICRUSt2. Available potassium increased significantly, whereas soil organic matter showed a decrease–recovery trajectory. Bacterial richness (Chao1) decreased after planting, while evenness increased; Shannon diversity remained stable. Community composition shifted directionally, with higher relative abundance of Pseudomonadota (formerly Proteobacteria) and reduced Acidobacteriota at later stages. PERMANOVA based on Bray–Curtis distances indicated significant temporal differences in community structure. RDA indicated that soil organic matter and bulk density were the primary drivers of community structural variation. Functionally, the overall metabolic framework remained stable, whereas pathways related to genetic information processing and metabolism exhibited significant differences (p < 0.05). By examining both intra-annual dynamics and inter-annual changes in soil bacteria and physicochemical properties following the planting of ‘Yitong 2’, this study clarifies patterns of soil property variation and trajectories of microbial community structure and functional potential, thereby providing a scientific basis for the establishment of high-quality I. polycarpa plantations and the sustainable development of soil ecosystems. Full article

Soil fungi are pivotal drivers of biogeochemical cycling, mediating nutrient transformation, plant–soil feedbacks, and ecosystem stability. Understanding their responses to vegetation succession is essential for predicting ecosystem recovery in fragile volcanic landscapes. We investigated soil fungal communities across five successional stages on the Jingpo Lake lava plateau—grassland (GL), shrubland (SL), deciduous broad-leaved forest (DB), coniferous and broad-leaved mixed forest (CB), and coniferous forest (CF)—using high-throughput ITS sequencing and soil physicochemical analysis. Basidiomycota and Ascomycota dominated at the phylum level, with Sebacina, Cortinarius, and Mortierella as core genera. Alpha diversity (Shannon, Simpson, Chao1) was significantly higher in early-successional GL and SL than in DB (p < 0.05), while CB exhibited the lowest community evenness (Pielou-e). Co-occurrence networks revealed greater connectivity in GL, whereas forest types showed simplified topologies. LEfSe identified distinct fungal biomarkers for each vegetation type. PICRUSt2-based functional prediction indicated biosynthesis as the dominant pathway (>40%), with significant variation among vegetation types. Redundancy analysis (RDA) identified soil organic matter (SOM) as the primary predictor of fungal community composition. Our findings indicate that vegetation succession is associated with changes in fungal diversity and function primarily linked to variations in SOM, with moisture regimes as a secondary contextual factor. Notably, advanced forest stages exhibited reduced fungal diversity and simplified community structure—highlighting a trade-off between nutrient enrichment and microbial complexity in volcanic ecosystems. These insights advance our understanding of plant–soil–microbe coupling during ecosystem restoration on lava plateaus. Full article

Heat stress represents a key environmental challenge in poultry production, markedly impairing broiler health and productivity. This study investigated the association between compound probiotic supplementation and the gut microbial community structure in heat-challenged broilers, analyzing the cecal contents from both groups using 16S rDNA amplicon sequencing. Compound probiotic supplementation was associated with changes in alpha diversity and richness of the cecal microbiota, with lower Shannon, Chao1, and ACE indices (p < 0.05). At the phylum level, compound probiotic supplementation significantly increased the relative abundance of Bacteroidota (p < 0.001) while decreasing that of Proteobacteria (p < 0.0001) in the cecum of broilers, whereas the relative abundances of Firmicutes and Verrucomicrobiota showed increasing trends. At the genus level, the relative abundance of Bacteroides (p < 0.0001) was significantly increased in the HP group, whereas Lactobacillus and Fusobacterium exhibited decreasing trends compared with the HS group. LEfSe analysis suggested Verrucomicrobia as a potentially enriched taxon in the HP group. Furthermore, KEGG level 3 functional prediction suggested enrichment of predicted pathways related to starch and sucrose metabolism, as well as amino acid and nucleotide metabolism in the HP group. These findings suggest that compound probiotics are associated with changes in gut microbial composition and predicted functions in heat-stressed broilers, providing preliminary, exploratory insights into their potential associations under heat stress. Full article

Plant invasions severely threaten the stability and biodiversity of fragile ecosystems in karst areas. Elucidating the microbial mechanisms underlying the interactions between invasive plants and native plants in rhizosphere soil is crucial for preventing plant invasions. In this study, high-throughput sequencing was used to compare the differences in rhizosphere fungi between two invasive and native plants in the Guizhou karst region. These findings provide theoretical support for understanding the ecological impact of invasive plants and for developing ecological management strategies based on soil microorganisms. The results revealed the following: (1) A total of 16 soil samples were included in the study, which comprised 1 phylum, 50 classes, 112 orders, 245 families, 463 genera and 629 species. (2) No significant differences were observed in the Ace, Chao, Shannon, Simpson and Sobs indices of the rhizosphere fungal communities between invasive plants and native plants (p > 0.05). (3) At the phylum level, no significant difference was observed in the community compositions of invasive and native plants; the dominant phyla were Ascomycota, Mortierellomycota and Basidiomycota; at the genus level, there were significant differences in the community composition of invasive and native plants, and the relative abundances of Minimedusa, Monocillium and Gymnopus in the rhizosphere soil of invasive plants were significantly higher (p < 0.05). (4) Functional predictions based on FUNGuild indicated a higher relative abundance of saprotrophic fungi associated with invasive plants. Community assembly processes for both invasive and native plants were primarily governed by stochastic ecological processes (e.g., drift). These findings suggest that plant invasion is associated with shifts in the composition and potential ecological functions of rhizosphere fungal communities in the karst area. Full article

The objective of this study was to investigate the relationships between ruminal microbial communities and carcass traits associated with adipose accumulation in two Tibetan sheep breeds—Gannan and Tianzhu. A total of twenty Tibetan sheep (ten from each breed) were slaughtered, and samples of ruminal contents along with carcass trait data were collected for analysis. Ruminal microbial DNA was analyzed by 16S rRNA gene sequencing, and correlations between microbial composition and carcass traits were examined using correlation analysis and one-way ANOVA. The results showed that marbling score (p = 0.001) and longissimus lipid content (p = 0.007) were positively correlated with the Chao1 richness index, indicating that individuals with higher intramuscular fat content had greater ruminal microbial species richness. At the phylum level, Rikenellaceae RC9 gut group, Ruminococcaceae NK4A214 group were negatively correlated (p ≤ 0.05) with the above fat traits, whereas the abundance of the bacterial family Ruminococcus 1 was positively correlated with marbling score (p = 0.002). Stratified analysis by marbling grade further revealed associations with microbial richness (p ≤ 0.063), diversity (p = 0.044), and Ruminococcus 1 abundance (p < 0.001). However, microbial metabolic pathway prediction showed no significant differences (p ≥ 0.05) between the high- and low-marbling groups. In addition, several microbial taxa were positively correlated (p ≤ 0.05) with rib fat thickness and yield grade. In summary, ruminal microbial composition was closely associated with variations in carcass fat traits. Notably, most of the bacterial taxa associated with intramuscular and subcutaneous fat deposition did not overlap, suggesting that microbial metabolites may regulate fat deposition by influencing distinct adipogenic pathways in the host. Full article