Soil Bacterial and Fungal Community Structure and Its Driving Factors Under Small-Scale Altitude Gradient on the Southern Slope of the Qilian Mountains
Abstract
1. Introduction
2. Materials and Methods
2.1. Description of the Study Area
2.2. Sample Collection and Processing
2.3. Index Determination
2.3.1. Determination of Litter Nutrients, Soil Physicochemical Indicators and Enzyme Activity
2.3.2. High-Throughput Sequencing, Soil Microbial DNA Extraction, and PCR Amplification
2.4. Microbial Data Preprocessing
2.5. Statistical Analysis
3. Results
3.1. Variations in Carbon, Nitrogen, and Phosphorus Concentrations and Their Stoichiometric Ratios Within Forest Litter Across Elevational Gradients
3.2. Altitudinal Variation in Physicochemical Attributes and Enzymatic Activities Within Forest Soils
3.3. Altitudinal Variation in Soil Bacterial and Fungal Diversity and Community Structure
3.3.1. Structural Makeup of Bacterial and Fungal Assemblages in Soils Across Elevational Gradients
3.3.2. α- and β-Diversity
3.4. Metabolic Versatility of Bacterial and Fungal Assemblages Within Soils Across Elevational Gradients
3.5. Environmental Factors Associated with the Composition and Diversity of Fungal and Bacterial Assemblages in Soils
3.5.1. Redundancy Analysis of Soil Bacteria, Fungi, and Litter Factors
3.5.2. Redundant Analysis of Soil Bacteria, Fungi, and Soil Factors
4. Discussion
4.1. Effects of Altitude on the Composition and Diversity of Soil Bacterial and Fungal Communities
4.2. Influence of Elevation on the Metabolic Versatility of Bacterial and Fungal Assemblages in Soils
4.3. Abiotic Variables Collectively Shape the Variation in Bacterial and Fungal Assemblages in Soils Across Elevational Gradients
4.4. Uncertainty Analysis and Implications of Small-Scale Elevational Gradient
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Costanza, R.; d’Arge, R.; de Groot, R.; Farber, S.; Grasso, M.; Hannon, B.; Limburg, K.; Naeem, S.; O’Neill, R.V.; Paruelo, J.; et al. The value of the world’s ecosystem services and natural capital. Ecol. Econ. 1998, 25, 3–15. [Google Scholar] [CrossRef]
- Bonan, G.B. Forests and climate change: Forcings, feedbacks, and the climate benefits of forests. Science 2008, 320, 1444–1449. [Google Scholar] [CrossRef]
- Ji, S.; Xie, H.; Du, S.; Zhang, S.; Dong, Z.; Li, H.; Qiu, X. Differences and Influencing Factors of Soil Bacterial Communities Under Different Forest Types on the Southern Slope of the Qilian Mountains. Biology 2025, 14, 927. [Google Scholar] [CrossRef]
- Ge, F. Effects of Different Carbon and Phosphorus Compounds Addition on Soil Carbon, Nitrogen, Phosphorus Nutrients and Microbial Activity in Subtropical Forests. Master’s Thesis, Fujian Normal University, Fuzhou, China, 2022. [Google Scholar]
- Schimel, J.P.; Schaeffer, S.M. Microbial control over carbon cycling in soil. Front. Microbiol. 2012, 3, 348. [Google Scholar] [CrossRef]
- Aili, A.; Xu, H.; Zhao, X.; Zhang, P.; Yang, R. Dynamics of Vegetation Productivity in Relation to Surface Meteorological Factors in the Altay Mountains in Northwest China. Forests 2022, 13, 1907. [Google Scholar] [CrossRef]
- Li, S. Spatial Heterogeneity of Soil Microbial Community Structure and Function in “Fertile Islands” of Northwest China’s Deserts. Doctoral Dissertation, Northwest A&F University, Xianyang, China, 2023. [Google Scholar]
- Wang, C.; Qu, L.; Yang, L.; Liu, D.; Morrissey, E.; Miao, R.; Liu, Z.; Wang, Q.; Fang, Y.; Bai, E. Large-scale importance of microbial carbon use efficiency and necromass to soil organic carbon. Glob. Change Biol. 2021, 27, 2039–2048. [Google Scholar] [CrossRef]
- Gao, H.Y.; Zhang, S.N.; Yang, Z.G.; Zhang, L.; Huang, H.G.; Yan, D.R. Soil Fungal Community Structure and Function 667 in Pinus tabulaeformis Forests for Sand Control in Horqin Sandy Land. Arid Zone Res. 2025, 42, 118–126. [Google Scholar]
- Gao, C.; Bezemer, T.M.; Liu, J.; Wang, D.; Wang, J.; Deng, S.; Wang, D.; Yin, H. Distinct roles of bacteria and fungi in driving rhizosphere and bulk soil multifunctionality of Abies georgei in an alpine forest. BMC Plant Biol. 2025, 25, 1602. [Google Scholar] [CrossRef]
- He, L.S.; He, X.H.; Feng, Y.Y.; Lu, Q.W.; Chang, X.; Tan, H.; Zhu, X.H.; Tuo, Y.F. Responses of soil microbial community structure to altitude gradients and influencing factors. Res. Soil Water Conserv. 2025, 32, 152–162. [Google Scholar]
- Fierer, N. Embracing the unknown: Disentangling the complexities of the soil microbiome. Nat. Rev. Microbiol. 2017, 15, 579–590. [Google Scholar] [CrossRef] [PubMed]
- Singh, D.; Lee-Cruz, L.; Kim, W.-S.; Kerfahi, D.; Chun, J.-H.; Adams, J.M. Strong elevational trends in soil bacterial community composition on Mt. Halla, South Korea. Soil Biol. Biochem. 2014, 68, 140–149. [Google Scholar] [CrossRef]
- Xie, L.; Ma, Y.; Wang, Y.; Ma, Y.; Liu, Y. Changes of soil bacterial community composition and functional groups in different altitude gradients of Potentilla fruticosa shrub in eastern Qinghai-Tibet Plateau. Front. Plant Sci. 2025, 16, 1539945. [Google Scholar] [CrossRef]
- Shigyo, N.; Umeki, K.; Hirao, T. Seasonal Dynamics of Soil Fungal and Bacterial Communities in Cool-Temperate Montane Forests. Front. Microbiol. 2019, 10, 1944. [Google Scholar] [CrossRef]
- Smith, A.P.; Marín-Spiotta, E.; Balser, T. Successional and seasonal variations in soil and litter microbial community structure and function during tropical postagricultural forest regeneration: A multiyear study. Glob. Change Biol. 2015, 21, 3532–3547. [Google Scholar] [CrossRef]
- Bai, L.; Wang, W.; Chen, Z.; Chen, X.; Xiong, Y. The Variations in Soil Microbial Communities and Their Mechanisms Along an Elevation Gradient in the Qilian Mountains, China. Sustainability 2025, 17, 1797. [Google Scholar] [CrossRef]
- Cui, Y.; Bing, H.; Fang, L.; Wu, Y.; Yu, J.; Shen, G.; Jiang, M.; Wang, X.; Zhang, X. Diversity patterns of the rhizosphere and bulk soil microbial communities along an altitudinal gradient in an alpine ecosystem of the eastern Tibetan Plateau. Geoderma 2019, 338, 118–127. [Google Scholar] [CrossRef]
- Li, J.; Shen, Z.; Li, C.; Kou, Y.; Wang, Y.; Tu, B.; Zhang, S.; Li, X. Stair-Step Pattern of Soil Bacterial Diversity Mainly Driven by pH and Vegetation Types Along the Elevational Gradients of Gongga Mountain, China. Front. Microbiol. 2018, 9, 569. [Google Scholar] [CrossRef]
- Margesin, R.; Miteva, V. Diversity and ecology of psychrophilic microorganisms. Res. Microbiol. 2011, 162, 346–361. [Google Scholar] [CrossRef]
- He, R.; Wang, J.; Qian, Q.; Zhang, H.; Hu, Y.; Li, Y. Water conservation capacity of litter and soil in the forest of Huzhu Beishan National Forest Park. J. Gansu Agric. Univ. 2021, 698, 133–141. [Google Scholar]
- Diao, E.L.; Cao, G.C.; Cao, S.K.; Yuan, J.; Tong, S.; Qiu, X.X. Different Scales of Soil Particle Size and Fractal 708 Characteristics. Res.Soil Water Conserv. 2024, 31, 212–220. [Google Scholar]
- Diao, E.; Cao, G.; Cao, S.; Yuan, J.; Yu, M.; Chen, Z.; Zhang, Z.; Tong, S.; Zhao, M. Soil Carbon and Nitrogen Contents and Path Analysis under Different Land Use Patterns on the 711 Southern Slope of the Qilian Mountains. Arid Zone Res. 2021, 38, 1346–1354. [Google Scholar]
- Wu, H.; Ji, S.; Qiu, X.; Du, S.; Xie, H. Characteristics of soil fungal community structure at different altitudes on the southern slope of the Qilian Mountains. J. For. Environ. Sci. 2024, 44, 571–580. [Google Scholar]
- Yang, N.; Zhou, C.; Li, Y.; Deng, Y. Microbial specialists in high-altitude forest soils: Environmental sensitivity and ecological significance. Front. Environ. Sci. Eng. 2024, 19, 30. [Google Scholar] [CrossRef]
- Hu, J. Research on the Interaction between Dominant Plant Species and Microorganisms along Altitudinal Gradients in Wuyi Mountain. Doctoral Dissertation, Fujian Agriculture and Forestry University, Fuzhou, China, 2025. [Google Scholar]
- He, F.; Yang, B.; Wang, H.; Yan, Q.; Cao, Y.; He, X. Changes in composition and diversity of fungal communities along Quercus mongolica forests developments in Northeast China. Appl. Soil Ecol. 2016, 100, 162–171. [Google Scholar] [CrossRef]
- Zhang, Y.; Xu, A.; Shang, H.; Ma, A. A methodological study for determining total nitrogen in soil and plants using an AA3continuous flow analyzer. J. Northwest AF Univ. (Nat. Sci. Ed.) 2006, 34, 128–132. [Google Scholar]
- Bao, S.D. Soil and Agricultural Chemistry Analysis; China Agriculture Press: Beijing, China, 2000. [Google Scholar]
- Guan, S. Soil Enzymes and Their Research Methods; China Agriculture Press: Beijing, China, 1986. [Google Scholar]
- Lu, R. Analytical Methods for Soil and Agricultural Chemistry; China Agriculture Press: Beijing, China, 2000. [Google Scholar]
- Wu, Y.; Zhong, X.; Liu, X.; Ding, B.; Zhang, Y. Impact of different forest types on soil microbial biomass and microbial entropy in the karst region of southwestern China. Front. Plant Sci. 2025, 16, 1678667. [Google Scholar] [CrossRef]
- Liu, C.; Zhao, D.; Ma, W.; Guo, Y.; Wang, A.; Wang, Q.; Lee, D.J. Denitrifying sulfide removal process on high-salinity wastewaters in the presence of Halomonas sp. Appl. Microbiol. Biotechnol. 2016, 100, 1421–1426. [Google Scholar] [CrossRef]
- Segata, N.; Izard, J.; Waldron, L.; Gevers, D.; Miropolsky, L.; Garrett, W.S.; Huttenhower, C. Metagenomic biomarker discovery and explanation. Genome Biol. 2011, 12, R60. [Google Scholar] [CrossRef]
- Yao, B.; Mou, X.; Li, Y.; Lian, J.; Niu, Y.; Liu, J.; Lu, J.; Li, Y.; Li, Y.; Wang, X. Distinct Assembly Patterns of Soil Bacterial and Fungal Communities along Altitudinal Gradients in the Loess Plateau’s Highest Mountain. Microb. Ecol. 2025, 88, 29. [Google Scholar] [CrossRef]
- Meng, H.; Li, K.; Nie, M.; Wan, J.R.; Quan, Z.X.; Fang, C.M.; Chen, J.K.; Gu, J.D.; Li, B. Responses of bacterial and fungal communities to an elevation gradient in a subtropical montane forest of China. Appl. Microbiol. Biotechnol. 2013, 97, 2219–2230. [Google Scholar] [CrossRef]
- Bryant, J.A.; Lamanna, C.; Morlon, H.; Kerkhoff, A.J.; Enquist, B.J.; Green, J.L. Colloquium paper: Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity. Proc. Natl. Acad. Sci. USA 2008, 105, 11505–11511. [Google Scholar] [CrossRef]
- Tedersoo, L.; Bahram, M.; Põlme, S.; Kõljalg, U.; Yorou, N.S.; Wijesundera, R.; Villarreal Ruiz, L.; Vasco-Palacios, A.M.; Thu, P.Q.; Suija, A.; et al. Fungal biogeography. Global diversity and geography of soil fungi. Science 2014, 346, 1256688. [Google Scholar] [CrossRef]
- Li, T.; Gao, Z.; Zhou, P.; Huang, M.; Wang, G.; Xu, J.; Deng, W.; Wang, M. Structures and determinants of soil microbiomes along a steep elevation gradient in Southwest China. Front. Microbiol. 2024, 15, 1504134. [Google Scholar] [CrossRef] [PubMed]
- Fierer, N.; Bradford, M.A.; Jackson, R.B. Toward an ecological classification of soil bacteria. Ecology 2007, 88, 1354–1364. [Google Scholar] [CrossRef]
- Treseder, K.K.; Lennon, J.T. Fungal traits that drive ecosystem dynamics on land. Microbiol. Mol. Biol. Rev. 2015, 79, 243–262. [Google Scholar] [CrossRef] [PubMed]
- Körner, C. The use of ‘altitude’ in ecological research. Trends Ecol. Evol. 2007, 22, 569–574. [Google Scholar] [CrossRef]
- Li, X.; Li, T.; Li, H. Asynchronous patterns in soil bacterial diversity and functional potentials along an alpine altitudinal gradient. Front. Microbiol. 2024, 15, 1428815. [Google Scholar] [CrossRef] [PubMed]
- Louca, S.; Polz, M.F.; Mazel, F.; Albright, M.B.N.; Huber, J.A.; O’Connor, M.I.; Ackermann, M.; Hahn, A.S.; Srivastava, D.S.; Crowe, S.A.; et al. Function and functional redundancy in microbial systems. Nat. Ecol. Evol. 2018, 2, 936–943. [Google Scholar] [CrossRef]
- Qi, Q.; Zhao, M.; Wang, S.; Ma, X.; Wang, Y.; Gao, Y.; Lin, Q.; Li, X.; Gu, B.; Li, G.; et al. The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture. Front. Microbiol. 2017, 8, 976. [Google Scholar] [CrossRef]
- Wei, T.; Zhang, H.; Wang, S.; Wu, C.; Tu, T.; Wang, Y.; Qian, X. Divergent altitudinal patterns of arbuscular and ectomycorrhizal fungal communities in a mid-subtropical mountain ecosystem. IMA Fungus 2025, 16, e140187. [Google Scholar] [CrossRef]
- Zhang, Y.; Sun, Q.; Liu, X.; Basit, R.A.; Ma, J.; Fu, Z.; Cheng, L.; Fan, G.; Teng, C. Screening, Identification, and Fermentation Condition Optimization of a High-Yield 3-Methylthiopropanol Yeast and Its Aroma-Producing Characteristics. Foods 2024, 13, 418. [Google Scholar] [CrossRef]
- Clemmensen, K.E.; Bahr, A.; Ovaskainen, O.; Dahlberg, A.; Ekblad, A.; Wallander, H.; Stenlid, J.; Finlay, R.D.; Wardle, D.A.; Lindahl, B.D. Roots and associated fungi drive long-term carbon sequestration in boreal forest. Science 2013, 339, 1615–1618. [Google Scholar] [CrossRef]
- Arnold, A.E.; Mejía, L.C.; Kyllo, D.; Rojas, E.I.; Maynard, Z.; Robbins, N.; Herre, E.A. Fungal endophytes limit pathogen damage in a tropical tree. Proc. Natl. Acad. Sci. USA 2003, 100, 15649–15654. [Google Scholar] [CrossRef] [PubMed]
- Tang, M.; Li, L.; Wang, X.; You, J.; Li, J.; Chen, X. Elevational is the main factor controlling the soil microbial community structure in alpine tundra of the Changbai Mountain. Sci. Rep. 2020, 10, 12442. [Google Scholar] [CrossRef]
- Keiser, A.D.; Knoepp, J.D.; Bradford, M.A. Microbial communities may modify how litter quality affects potential decomposition rates as tree species migrate. Plant Soil 2013, 372, 167–176. [Google Scholar] [CrossRef]
- Delgado-Baquerizo, M.; Eldridge, D.J.; Ochoa, V.; Gozalo, B.; Singh, B.K.; Maestre, F.T. Soil microbial communities drive the resistance of ecosystem multifunctionality to global change in drylands across the globe. Ecol. Lett. 2017, 20, 1295–1305. [Google Scholar] [CrossRef] [PubMed]
- Burns, R.G.; DeForest, J.L.; Marxsen, J.; Sinsabaugh, R.L.; Stromberger, M.E.; Wallenstein, M.D.; Weintraub, M.N.; Zoppini, A. Soil enzymes in a changing environment: Current knowledge and future directions. Soil Biol. Biochem. 2013, 58, 216–234. [Google Scholar] [CrossRef]
- Shulman, H.B.; Pyle, J.A.M.; Classen, A.T.; Inouye, D.W.; Simberloff, R.; Sorensen, P.O.; Thomas, W.t.; Rudgers, J.A.; Kivlin, S.N. Nutrient limitation shapes functional traits of mycorrhizal fungi and phosphorus-cycling bacteria across an elevation gradient. mSystems 2026, 11, e0052325. [Google Scholar] [CrossRef]













| Plot Id | Altitude/m | Geographic Coordinates |
|---|---|---|
| A1 | 2400 | 102°37′64.38″ E, 36°72′21.34″ N |
| A2 | 2500 | 102°24′56.80″ E, 36°55′10.09″ N |
| A3 | 2600 | 102°24′55.43″ E, 36°55′06.30″ N |
| A4 | 2700 | 102°23′88.75″ E, 36°55′44.40″ N |
| A5 | 2800 | 102°24′37.93″ E, 36°54′41.28″ N |
| Altitude/m | C Content | N Content | P Content |
|---|---|---|---|
| /(g·kg−1) | /(g·kg−1) | /(g·kg−1) | |
| 2400 | 476.26 ± 2.72 a | 9.61 ± 0.12 e | 0.58 ± 0.02 c |
| 2500 | 470.35 ± 2.44 a | 12.49 ± 0.19 d | 0.79 ± 0.01 b |
| 2600 | 475.46 ± 3.95 a | 16.32 ± 0.33 a | 0.91 ± 0.03 a |
| 2700 | 470.98 ± 1.63 a | 14.41 ± 0.28 b | 0.63 ± 0.03 c |
| 2800 | 479.50 ± 5.13 a | 13.23 ± 0.06 c | 0.60 ± 0.01 c |
| Altitude/m | C/N | C/P | N/P |
| 2400 | 49.58 ± 0.35 a | 822.41 ± 21.59 a | 16.58 ± 0.37 bc |
| 2500 | 37.66 ± 0.37 b | 595.50 ± 4.88 c | 15.81 ± 0.05 c |
| 2600 | 29.14 ± 0.35 e | 523.52 ± 14.78 d | 17.96 ± 0.34 b |
| 2700 | 32.70 ± 0.52 d | 754.48 ± 33.40 b | 23.10 ± 1.30 a |
| 2800 | 36.26 ± 0.57 c | 794.88 ± 9.72 ab | 21.93 ± 0.30 a |
| 2400 m | 2500 m | 2600 m | 2700 m | 2800 m | |
|---|---|---|---|---|---|
| pH | 6.20 ± 0.12 c | 7.99 ± 0.37 a | 7.14 ± 0.18 b | 6.74 ± 0.31 bc | 6.81 ± 0.06 bc |
| SWC/(%) | 0.34 ± 0.07 ab | 0.18 ± 0.02 b | 0.24 ± 0.07 b | 0.48 ± 0.04 a | 0.25 ± 0.02 b |
| TN/(g·kg−1) | 12.33 ± 0.18 ab | 4.82 ± 2.53 c | 13.16 ± 0.53 ab | 14.69 ± 0.81 a | 9.82 ± 0.36 b |
| SOC/(g·kg−1) | 347.33 ± 9.09 a | 105.81 ± 58.13 c | 320.60 ± 10.98 a | 382.29 ± 19.24 a | 210.15 ± 12.15 b |
| TP/(g·kg−1) | 0.86 ± 0.01 b | 0.76 ± 0.07 b | 0.80 ± 0.05 b | 0.84 ± 0.03 b | 1.03 ± 0.01 a |
| URE/(mg·g−1·d−1) | 3.85 ± 0.36 a | 3.22 ± 0.95 ab | 1.57 ± 0.23 b | 2.68 ± 0.94 ab | 2.54 ± 0.45 ab |
| CAT/(mL·g−1) | 8.66 ± 0.15 ab | 5.32 ± 0.94 c | 7.91 ± 0.72 ab | 9.28 ± 0.04 a | 7.29 ± 0.32 b |
| α-glucosidase/(nmol·g−1·h−1) | 10.13 ± 1.11 ab | 8.00 ± 1.56 b | 12.02 ± 1.68 ab | 14.67 ± 1.81 a | 11.26 ± 0.57 ab |
| MBC/(mg·kg−1) | 1959.47 ± 5.60 ab | 378.11 ± 36.22 d | 1924.04 ± 93.89 b | 2252.58 ± 172.39 a | 1443.23 ± 88.40 c |
| MBN/(mg·kg−1) | 194.95 ± 9.19 a | 30.78 ± 5.01 c | 204.31 ± 11.52 a | 232.80 ± 24.01 a | 147.80 ± 7.45 b |
| MBP/(mg·kg−1) | 38.05 ± 2.39 bc | 6.29 ± 0.91 d | 41.19 ± 2.29 ab | 49.56 ± 4.88 a | 30.39 ± 1.39 c |
| MBC/MBN | 10.10 ± 0.53 a | 12.94 ± 2.51 a | 9.42 ± 0.08 a | 9.75 ± 0.50 a | 9.75 ± 0.13 a |
| MBC/MBP | 51.95 ± 3.59 a | 62.57 ± 10.95 a | 46.80 ± 1.67 a | 45.72 ± 1.88 a | 47.49 ± 2.04 a |
| MBN/MBP | 5.14 ± 0.10 a | 4.86 ± 0.10 a | 4.96 ± 0.16 a | 4.69 ± 0.05 a | 4.87 ± 0.20 a |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Zhang, Y.; Xie, H.; Ji, S.; Chen, W.; Qiu, X.; Dong, Z.; Yang, X. Soil Bacterial and Fungal Community Structure and Its Driving Factors Under Small-Scale Altitude Gradient on the Southern Slope of the Qilian Mountains. Microorganisms 2026, 14, 928. https://doi.org/10.3390/microorganisms14040928
Zhang Y, Xie H, Ji S, Chen W, Qiu X, Dong Z, Yang X. Soil Bacterial and Fungal Community Structure and Its Driving Factors Under Small-Scale Altitude Gradient on the Southern Slope of the Qilian Mountains. Microorganisms. 2026; 14(4):928. https://doi.org/10.3390/microorganisms14040928
Chicago/Turabian StyleZhang, Yue, Huichun Xie, Shuang Ji, Wenfang Chen, Xunxun Qiu, Zhiqiang Dong, and Xukai Yang. 2026. "Soil Bacterial and Fungal Community Structure and Its Driving Factors Under Small-Scale Altitude Gradient on the Southern Slope of the Qilian Mountains" Microorganisms 14, no. 4: 928. https://doi.org/10.3390/microorganisms14040928
APA StyleZhang, Y., Xie, H., Ji, S., Chen, W., Qiu, X., Dong, Z., & Yang, X. (2026). Soil Bacterial and Fungal Community Structure and Its Driving Factors Under Small-Scale Altitude Gradient on the Southern Slope of the Qilian Mountains. Microorganisms, 14(4), 928. https://doi.org/10.3390/microorganisms14040928
