Search Results (9)

Deep-sea trawling in the Mediterranean Sea, while economically significant, has profound ecological implications due to high discard rates and the practice’s impact on deep-sea biodiversity. This study examines the composition of discards and bycatch in Antalya Bay, a key deep-sea fishing area in the Eastern Mediterranean, during a commercial fishing season, focusing on seasonal and depth-related variations. Data were collected from deep-sea bottom trawl operations conducted between September 2016 and April 2017, analyzing species diversity and catch composition in terms of discarded and bycatch species. The results revealed an average discard rate of 70.7% of the total catch, with significant seasonal fluctuations. In total, 75 species were identified, comprising 48 Osteichthyes, 11 Elasmobranchii, 10 Crustacea, 4 Mollusca, 1 Brachiopoda, and 1 Echinodermata. Discarded species primarily consisted of juveniles of commercially valuable species (Merluccius merluccius and Lepidorhombus whiffiagonis), endangered elasmobranchs, and non-target benthic invertebrates. Depth-stratified analysis indicated that higher discard ratios and greater biodiversity loss occur at depths between 200 and 700 m, where slow-growing species and vulnerable deep-sea assemblages dominate. CPUE estimates for target, bycatch, and discarded species were calculated as 72.26, 145.12, and 385.52 kg/h, and CPUA values were calculated as 0.79, 1.59, and 2.92, respectively. These findings underscore the disproportionate impact of bottom trawling on deep-sea ecosystems and highlight the need for sustainable fisheries management strategies. Full article

(1) Background: Chitons (Mollusca, Polyplacophora) are relatively primitive species in Mollusca that allow the study of biomineralization. Although mitochondrial genomes have been isolated from Polyplacophora, there is no genomic information at the chromosomal level; (2) Methods: Here we report a chromosome-level genome assembly for Acanthochiton rubrolineatus using PacBio (Pacific Biosciences, United States) reads and high-throughput chromosome conformation capture (Hi-C) data; (3) Results: The assembly spans 1.08 Gb with a contig N50 of 3.63 Mb and 99.97% of the genome assigned to eight chromosomes. Among the 32,291 predicted genes, 76.32% had functional predictions. The divergence time of Brachiopoda and Mollusca was ~550.8 Mya (million years ago), and that of A. rubrolineatus and other mollusks was ~548.5 Mya; (4) Conclusions: This study not only offers high-quality reference sequences for the Acanthochiton rubrolineatus genome, but also establishes groundwork for investigating the mechanisms of Polyplacophora biomineralization and its evolutionary history. This research will aid in uncovering the genetic foundations of molluscan adaptations across diverse environments. Full article

Two brachiopod species, Terebratulina tenuistriata (Leymerie, 1846) and Orthothyris pectinoides (von Koenen, 1984), have been recorded for the first time from the Middle Eocene (Late Lutetian) nummulitic limestone beds in the Darnah Formation at the Wadi Darnah area in Northeast Libya. These brachiopod species are associated here with Nummulites discorbinus (Schlotheim), Nummulites praelyelli (Boukhary and Kamal), and Nummulites bullatus (Schaub) and are widely distributed on this Middle Eocene Nummulites carbonate platform. The two recorded species are common in the Eocene rocks of Europe and the Arabian Gulf. In northern Africa, the brachiopod species Terebratulina tenuistriata (Leymerie) was only recorded from the Middle Eocene (Bartonian) of Egypt, while Orthothyris pectinoides (von Koenen) is firstly recorded from the Middle Eocene of the southern Tethyan Province (NE Libya) in the present work. Full article

Nucleotide-binding oligomerization domain (NOD)-like receptor (NLR) inflammasomes are multiprotein signaling platforms that control the inflammatory response and coordinate antimicrobial defense. In the present study, the distribution of NLR, Caspase-1, and gasdermin (GSDM) homologues and their structural characteristics and evolutionary relationships were systematically analyzed in metazoa according to the genomes of species. In invertebrates, there were only NLRC and/or NLRD presented from sponge to amphioxus, and according to the evolutionary tree, NLR from sponge located in the most primitive position. Caspase-1 existed in some metazoan phyla (Brachiopoda, Ectoprocta, Arthropoda, Mollusca, Annelia, Nematoda, Platyelminthes, Coelenterate, and Porifera) and its activation sites were relatively conserved. The amino acid sequences and three-dimensional structures of N-terminal CARD/Death domain of NLR and Caspase-1 were similar in species from sponge to human. NLR and Caspase-1 co-existed in species of Brachiopoda, Mollusca, Annelia, Coelenterate, and Porifera. There was only GSDME or PJVK found in some phyla of invertebrates and their cleavage sites were conserved (DxxD). And it was predicted that the NLR inflammasome in inducing pyroptosis could occur in species of Brachiopoda, Mollusca, Annelia, and Coelenterate. These studies indicated that NLR inflammasome emerged early in sponges of metazoa, and NLR inflammasome in inducing pyroptosis first appeared in Coelenterate, suggesting that inflammasome and its mediated pyroptosis had existed in the early stage of metazoa, but they had been lost in many species during evolution. Full article

Variations in the geochemical signatures of fossil brachiopod shells may be due to diagenesis and/or biological processes (i.e., ‘vital effects’). It is critical to characterise them in order to identify reliable shell areas suitable for paleoclimate studies. This investigation contributes to an in-depth understanding of geochemical variations in Gigantoproductus sp. shells (SW Spain, Serpukhovian age), throwing light onto the Late Paleozoic Ice Age interpretation. Microstructural, crystallographic, cathodoluminescence and geochemical (minor and trace elements, δ¹⁸O, δ¹³C, and strontium isotopes) characterisations have been performed on the tertiary layer of the ventral valve, to assess the preservation state. Poorly preserved areas exhibit microstructural and geochemical changes such as recrystallisation, fracturing and higher Mn and Fe enrichment. Moreover, these areas have a higher dispersion of ⁸⁶Sr, ⁸⁷Sr, δ¹⁸O and δ¹³C than well-preserved areas. Three structural regions have been identified in well-preserved areas of the ventral valve by differences in valve curvature and thickness, such as the umbonal and thick and thin regions. These regions have different proportions of Mg, S, Na, δ¹⁸O, and δ¹³C, which are interpreted as ‘vital effects’ and probably related to growth-rate differences during shell growth. The Gigantoproductus tertiary layer seems the most suitable for paleoclimate studies, because it retains the original microstructure and geochemical composition. Full article

Compared to their fossil counterparts, living brachiopods are investigated far less often, due to their occurrence in remote environments such as dark caves or deep environments. Due to the scarcity of studies targeting in situ brachiopods’ populations, large-scale information on their distribution and ecological preferences is still lacking, especially on hardgrounds. The extensive employment of remotely operated vehicles (ROVs), however, has opened up the chance to better explore this taxon’s diversity and ecology in the mesophotic and bathyal zones. The analysis of over 600 h of video footage collected from 624 sites, from 40 m to 1825 m, located along the Ligurian and Tyrrhenian coasts of Italy and the Sicily Channel, allowed for a large-scale investigation. The four identified species, Novocrania anomala, Gryphus vitreus, Megerlia truncata and Terebratulina retusa, emerged as common macrofaunal components of the explored habitats, especially between 150 m and 250 m, with high occurrences in the northern areas, especially on offshore seamounts. All species can form dense aggregations of individuals, with M. truncata showing the densest populations on steep rocky terraces (up to 773 individuals m⁻²). Except for G. vitreus, the only species also recorded on soft bottoms, the others were found exclusively on hardgrounds, with N. anomala showing a peculiar ability to exploit anthropogenic substrates such as terracotta amphorae. No stable species-specific associations were noted, even if numerous species were frequently observed together. Although brachiopods do not show the conspicuous tridimensionality of large filter-feeders, their substrate occupancy and their role in pelagic–benthic processes support their importance in deep-sea Mediterranean ecosystems. Full article

Although the lophophore is regarded as the main synapomorphy of all lophophorates, the evolution of the lophophore in certain groups of lophophorates remains unclear. To date, the innervation of the lophophore has been studied with modern methods only for three brachiopod species belonging to two subphyla: Linguliformea and Rhynchonelliformea. In the third subphylum, the Craniiformea, there are data for juveniles but not for adults. In the current research, the innervation of the lophophore in Novocrania anomala adults was studied by immunocytochemistry and confocal laser scanning microscopy. In the spiral lophophore of adults of the craniiform N. anomala, each arm is innervated by six brachial nerves: main, additional main, accessory, second accessory, additional lower, and lower brachial nerves. Compared with other brachiopod species, this complex innervation of the lophophore correlates with the presence of many lophophoral muscles. The general anatomy of the lophophore nervous system and the peculiarities of the organization of the subenteric ganglion of the craniiform N. anomala have a lot in common with those of rhynchonelliforms but not with those of linguliforms. These findings are consistent with the “Calciata” hypothesis of the brachiopod phylogeny and are inconsistent with the inference that the Craniiformea and Linguliformea are closely related. Full article

The Piip Volcano is a submarine volcanic edifice occupying the central part of the Volcanologists Massif in the southwestern Bering Sea, with two tops, southern and northern. The minimum depth of the northern top is located at 368 m, and of the southern at 464 m. Active hydrothermal venting occurring at both summits of the volcano supports diverse biological communities, including animals specific for chemosynthetic habitats. In benthic organisms inhabiting the northern and southern tops of the Piip Volcano, for the first time, we examined distribution patterns of the following trace elements: titanium, vanadium, chromium, manganese, iron, nickel, copper, zinc, arsenic, selenium, zirconium, molybdenum, silver, cadmium, antimony, barium, tungsten, lead, bismuth, and uranium. The element contents were quantified by the ICP-MS. Total carbon (TC) and total inorganic carbon (TIC) were determined using a Shimadzu TOC-L-CPN and mineral composition of sediment was determined using the XRD. In the water of the biotope from the northern top, concentrations of Mn, Zn, Ag, Cd, Sb, W, Pb were 2–6 times, and Ba was 50 times higher than those from the southern top. This was attributed to the lower temperature of fluids emanating at the southern top. An abundant population of Calyptogena pacifica (Bivalvia: Vesicomyidae: Pliocardiinae) was found only at the southern top. The main target of most trace elements, such as Fe, V, Cr, Co, Ni, Zn, As, Mo, Ag, Cd, W, Pb, Bi, and U were the soft parts of Calyptogena pacifica (with high TOC content, on average 53.1% in gills and 49.6% in the rest of the body). Gills were characterized by particular high contents (>100 µg g⁻¹ dry w.) of Zn, Cd, Fe, Ni, Cu, and Pb, which can form sulphides or be associated with them. Shells of C. pacifica, as well as Brachiopoda, were depleted in these elements, as well as tissues of the carnivores Paguridae (Crustacea) and Actiniaria (Anthozoa). In suspension feeders from both tops, the lower contents of most elements were detected. Estimation of Biological Concentration Factor (BCF) for most elements varied from 10² to 10⁴, reaching n10⁵ for Ni, Zn, Ag, Cd, and Pb. A significant difference in BCF values between Fe and Mn was revealed. Full article

Hox genes are regulators of animal embryonic development. Changes in the number and sequence of Hox genes as well as in their expression patterns have been related to the evolution of the body plan. Lophotrochozoa is a clade of Protostomia characterized by several phyla which show a wide morphological diversity. Despite that the works summarized in this review emphasize the fragmentary nature of the data available regarding the presence and expression of Hox genes, they also offer interesting insight into the evolution of the Hox cluster and the role played by Hox genes in several phyla. However, the number of genes involved in the cluster of the lophotrochozoan ancestor is still a question of debate. The data presented here suggest that at least nine genes were present while two other genes, Lox4 and Post-2, may either have been present in the ancestor or may have arisen as a result of duplication in the Brachiopoda-Mollusca-Annelida lineage. Spatial and temporal collinearity is a feature of Hox gene expression which was probably present in the ancestor of deuterostomes and protostomes. However, in Lophotrochozoa, it has been detected in only a few species belonging to Annelida and Mollusca. Full article