Search Results (41)

The RasGAP SH3 domain binding protein (G3BP) is a highly conserved family of proteins in eukaryotic organisms that coordinates signal transduction and post-transcriptional gene regulation and functions in the formation of stress granules. G3BPs have important roles in abiotic/biotic stresses in mammals, and recent research suggests that they have similar functions in higher plants. Brassica contains many important oilseeds, vegetables, and ornamental plants, but there are no reports on the G3BP family in Brassica species. In this study, we identified G3BP family genes from six species of the U’s triangle (B. rapa, B. oleracea, B. nigra, B. napus, B. juncea, and B. carinata) at the genome-wide level. We then analyzed their gene structure, protein motifs, gene duplication type, phylogeny, subcellular localization, SSR loci, and upstream miRNAs. Based on transcriptome data, we analyzed the expression patterns of B. napus G3BP (BnaG3BP) genes in various tissues/organs in response to Sclerotinia disease, blackleg disease, powdery mildew, dehydration, drought, heat, cold, and ABA treatments, and its involvement in seed traits including germination, α-linolenic acid content, oil content, and yellow seed. Several BnaG3BP DEGs might be regulated by BnaTT1. The qRT-PCR assay validated the inducibility of two cold-responsive BnaG3BP DEGs. This study will enrich the systematic understanding of Brassica G3BP family genes and lay a molecular basis for the application of BnaG3BP genes in stress tolerance, disease resistance, and quality improvement in rapeseed. Full article

Asparagus decline syndrome (ADS) poses a significant threat to asparagus cultivation worldwide. To address this challenge, a two-year investigation was carried out in Spain to assess the impacts of three soil disinfection strategies on asparagus crops. These included biofumigation with Brassica carinata seed pellets, biofumigation using poultry manure pellets, and chemical disinfection with dazomet. In addition to evaluating the potential of these treatments to alleviate ADS, the research also focused on identifying the physiological changes linked to the syndrome by examining indicators of oxidative metabolism, hormonal equilibrium, and phenolic compound profiles. Among the treatments evaluated, biofumigation with B. carinata pellets enhanced vegetative growth, photosynthetic pigment accumulation, antioxidant capacity, and hormonal homeostasis, with these improvements becoming more pronounced in the second year. This approach appeared to promote a healthier physiological status in asparagus plants, likely through improved soil health and reduced biotic and abiotic stress perception. In contrast, chemical disinfection with dazomet, despite initially stimulating some physiological responses, was associated with elevated oxidative stress. Overall, the findings suggest that organic-based soil treatments, particularly B. carinata biofumigation, represent a promising strategy to strengthen asparagus vigor and resilience against ADS. Further studies are needed to assess their long-term effects in perennial cultivation systems. Full article

Asparagus decline syndrome (ADS) is a major challenge affecting asparagus production, leading to reduced yield and spear quality. This study evaluated the effectiveness of different control strategies, including biosolarization with Brassica carinata seed pellets, biosolarization with chicken manure pellets, and chemical disinfection with Dazomet. Field trials were conducted over three consecutive years to assess their impact on commercial yield, spear quality, and plant performance. Biosolarization with B. carinata seed pellets increased commercial yield by 17% and the number of spears per plot by 21%, compared to the control. B. carinata seed pellets and Dazomet improved spear weight by 196% and 170%, respectively, and increased diameter by 115% and 95%, respectively, in 2019. In 2021, chicken manure pellets and Dazomet treatments reduced hardness by 11% and °Brix by 5% and 4%, respectively. These findings suggest that biosolarization could be an effective strategy to mitigate ADS effects and enhance asparagus yield and quality. Furthermore, the results highlight the importance of considering biological control methods to manage ADS while preserving beneficial soil microorganisms. This study provides valuable insights for sustainable asparagus production, emphasizing the role of biosolarization as an alternative to chemical disinfection in ADS-affected fields. Full article

Brassica species evolved through recurrent polyploidization and chromosomal rearrangements, forming diploid progenitors that hybridize into allopolyploids. These plants exhibit remarkable morphological diversity, with specialized edible organs including leaf-, stem-, root-, and oil-type cultivars, yet cross-species multi-organ transcriptomic studies elucidating their gene expression similarities and divergences remain lacking. To address this gap, we analyzed publicly available transcriptomes (downloaded from NCBI SRA) from eight organs (embryo, seed coat, silique, root, stem, leaf, flower and seedling) across six U’s Triangle species (Brassica rapa, B. nigra, B. oleracea, B. juncea, B. napus, B. carinata), revealing that (1) reproductive organs show higher gene expression conservation (GEC), particularly embryos (p < 0.05); (2) lineage-specific subgenome dominance patterns (BnaC/BjuB/BcaC) persist across organs; and (3) ancestral subgenomes functionally specialize, with MF2-subgenome transcription factors (YABBY/GRF) regulating embryogenesis and LF/MF1-subgenome MYBs controlling seed coat development. Comparative analyses demonstrate floral GEC exceeds that of the Arabidopsis thaliana homologs, while also exhibiting seed-specific divergence patterns. This study establishes a comprehensive Brassica multispecies expression atlas, elucidating organ-specific evolutionary conservation principles and providing molecular insights into subgenome functional partitioning, which offers valuable perspectives for understanding Brassica evolutionary mechanisms and crop improvement strategies. Full article

Cinnamyl alcohol dehydrogenase (CAD) is essential for lignin precursor synthesis and responses to various abiotic stresses in plants. However, the functions of CAD in Brassica species, especially in Brassica napus, remain poorly characterized. In the present study, we identified a total of 90 CAD genes across the Brassica U-triangle species, including B. rapa, B. nigra, B. oleracea, B. juncea, B. napus, and B. carinata. Comprehensive analyses of phylogenetic relationships, sequence identity, conserved motifs, gene structure, chromosomal distribution, collinearity, and cis-acting elements were performed. Based on phylogenetic analysis, these genes were categorized into four groups, designated as groups I to IV. Most of the CAD genes were implicated in mediating responses to abiotic stresses and phytohormones. Notably, members in group III, containing the bona fide CAD genes, were directly involved in lignin synthesis. Furthermore, the expression profiles of BnaCAD genes exhibited differential responses to drought, osmotic, and ABA treatments. The expression levels of the BnaCAD4a, BnaCAD4b, BnaCAD5b, and BnaCAD5d genes were detected and found to be significantly lower in yellow-seeded B. napus compared to the black-seeded ones. This study provides a comprehensive characterization of CAD genes in Brassica U-triangle species and partially validates their functions in B. napus, thereby contributing to a better understanding of their roles. The insights gained are expected to facilitate the breeding of yellow-seeded B. napus cultivars with enhanced stress tolerance and desirable agronomic traits. Full article

Soil-borne diseases threaten sustainable agriculture, traditionally managed by chemical fumigants, whose use is now restricted due to environmental and health concerns. This study evaluates the biofumigation potential of Brassicaceae species, specifically Brassica carinata A. Braun., Brassica juncea (L.) Vassiliĭ Matveievitch Czernajew., Raphanus sativus L., and Sinapis alba L., cultivated in central Spain. Field trials across two growing cycles assessed biomass production, glucosinolate (GSL) concentration, photosynthetically active radiation (PAR) interception, and radiation use efficiency (RUE). Biomass production varied across species and sampling dates, with S. alba and R. sativus outperforming other species in shorter cycles, while B. juncea and B. carinata showed a more efficient GSL profile regarding soil-borne disease control, particularly in aliphatic GSLs like sinigrin. Results highlight B. juncea and B. carinata as potent biofumigants due to their high GSL levels, whereas S. alba and R. sativus are more suited to early biomass production. The study also explores the chlorophyll content index (SPAD) as a potential field indicator of GSL concentration, providing a practical approach for optimizing biofumigation timing. These findings support the selection of specific Brassicaceae species adapted to climatic conditions and crop cycles for effective biofumigation in sustainable agricultural practices. Full article

Brassica carinata is an important and native oilseed crop in Ethiopia. The seed oil from B.carinata attracts global attention for its various industrial applications, mainly due to its high erucic acid levels and its superior agronomic traits. Since the demand for high erucic acid from oilseed brassica has been increasing in the world market due to its wider applications in bio-industries, the breeding target of B. carinata has recently been focused on enhancing its erucic acid. Several high erucic acid B. carinata genotypes have been screened from the pre-breeding activities. Such genotypes, however, need to be tested for their stable performance, for their erucic acid level, and other desirable traits under different environments. The aim of this study was to identify high erucic acid B. carinata genotypes with stable performance in multiple desirable traits. Thirty-two B. carinata genotypes were grown in a randomized complete block design with three replications at three locations for two years. The genotypes were evaluated for nine desirable traits related to seed oil quality (erucic acid and oil content), seed yield, and other agronomic traits. The results showed that the proportion of genotype by environment interaction (GEI) was clearly observed in erucic acid, which led to a stability and mean performance analysis for selecting the most stable and best-performing genotypes for the desired traits. For such an analysis, we used the multi-trait stability index (MTSI) along with the weighted average of absolute score BLUPs (WAASB). As revealed from the MTSI, five genotypes (G13, G18, G10, G22 and G5) were identified as the most stable in erucic acid, oil content, seed yield, and other agronomic traits. The selected genotypes showed on average 45.7% erucic acid, 3185 kg ha⁻¹ seed yield and 45.1% oil content with 4.3%, 25.8% and 6.9% positive selection gain, respectively. The negative selection gain of phenological traits and the plant height of the selected genotypes revealed their early maturity and their lower probability of being affected by lodging. Our findings demonstrated MTSI can be used to select high erucic acid B. carinata with a set of desirable traits, which would facilitate breeding efforts in developing novel and high erucic acid B. carinata varieties. Our results also showed that MTSI is an effective tool for selecting genotypes across different environments due to its unique ability to select multiple traits simultaneously. Full article

Metabolic engineering enables oilseed crops to be more competitive by having more attractive properties for oleochemical industrial applications. The aim of this study was to increase the erucic acid level and to produce wax ester (WE) in seed oil by genetic transformation to enhance the industrial applications of B. carinata. Six transgenic lines for high erucic acid and fifteen transgenic lines for wax esters were obtained. The integration of the target genes for high erucic acid (BnFAE1 and LdPLAAT) and for WEs (ScWS and ScFAR) in the genome of B. carinata cv. ‘Derash’ was confirmed by PCR analysis. The qRT-PCR results showed overexpression of BnFAE1 and LdPLAAT and downregulation of RNAi-BcFAD2 in the seeds of the transgenic lines. The fatty acid profile and WE content and profile in the seed oil of the transgenic lines and wild type grown in biotron were analyzed using gas chromatography and nanoelectrospray coupled with tandem mass spectrometry. A significant increase in erucic acid was observed in some transgenic lines ranging from 19% to 29% in relation to the wild type, with a level of erucic acid reaching up to 52.7%. Likewise, the transgenic lines harboring ScFAR and ScWS genes produced up to 25% WE content, and the most abundant WE species were 22:1/20:1 and 22:1/22:1. This study demonstrated that metabolic engineering is an effective biotechnological approach for developing B. carinata into an industrial crop. Full article

Microgreens are innovative vegetable products whose production and consumption are gaining popularity globally thanks to their recognized nutraceutical properties. To date, the effects of lighting conditions and growing substrate on the performances of Brassica carinata microgreens (indigenous to Africa) remain underexplored. The present study aimed at providing insights into the influence of different lighting treatments provided by LEDs, namely monochromatic blue (B), red (R), cool white (W) and a combination of three color diodes (B + R + W), and substrates (cocopeat, sand and cocopeat–sand mix (v/v) (1:1)) on the growth, yield and bioactive compounds of B. carinata microgreens. Seeds were germinated in dark chambers and cultivated in growth chambers equipped with LED lighting systems for 14 days under a fixed light intensity of 160 ± 2.5 µmol m⁻² s⁻¹ and photoperiod of 12 h d⁻¹. The best performances were associated with the spectrum that combined B + R + W LEDs and with substrate resulting from the cocopeat–sand mix, including the highest yield (19.19 g plant⁻¹), plant height (9.94 cm), leaf area (68.11 mm²) and canopy cover (55.9%). Enhanced carotenoid and flavonoid contents were obtained with B + R + W LEDs, while the B LED increased the total amount of chlorophyll (11,880 mg kg⁻¹). For plants grown under B + R + W LEDs in cocopeat, high nitrate levels were observed. Our results demonstrate that substrate and light environment interact to influence the growth, yield and concentration of bioactive compounds of B. carinata microgreens. Full article

Acyl carrier proteins (ACPs) have been reported to play a crucial role in responding to biotic and abiotic stresses, regulating growth and development. However, the biological function of the ACP gene family in the Brassica genus has been limited until now. In this study, we conducted a comprehensive analysis and identified a total of 120 ACP genes across six species in the Brassica genus. Among these, there were 27, 26, and 30 ACP genes in the allotetraploid B. napus, B. juncea, and B. carinata, respectively, and 14, 13, and 10 ACP genes in the diploid B. rapa, B. oleracea, and B. nigra, respectively. These ACP genes were further classified into six subclades, each containing conserved motifs and domains. Interestingly, the majority of ACP genes exhibited high conservation among the six species, suggesting that the genome evolution and polyploidization processes had relatively minor effects on the ACP gene family. The duplication modes of the six Brassica species were diverse, and the expansion of most ACPs in Brassica occurred primarily through dispersed duplication (DSD) events. Furthermore, most of the ACP genes were under purifying selection during the process of evolution. Subcellular localization experiments demonstrated that ACP genes in Brassica species are localized in chloroplasts and mitochondria. Cis-acting element analysis revealed that most of the ACP genes were associated with various abiotic stresses. Additionally, RNA-seq data revealed differential expression levels of BnaACP genes across various tissues in B. napus, with particularly high expression in seeds and buds. qRT-PCR analysis further indicated that BnaACP genes play a significant role in salt stress tolerance. These findings provide a comprehensive understanding of ACP genes in Brassica plants and will facilitate further functional analysis of these genes. Full article

Brassica carinata is one of the oilseeds in the Brassicaceae family, possessing seed quality traits such as oil with various fatty acid profiles suitable for many industrial applications. Determination of such quality traits using conventional methods is often expensive, time-consuming, and destructive. In contrast, the Near-Infrared Spectroscopic (NIRS) technique has been proven fast, cost-effective, and non-destructive for the determination of seed compositions. This study aimed to demonstrate that NIRS is a rapid and non-destructive method for determining the fatty acid profile and oil content in diverse germplasms of B. carinata. A total of 96 genetically diverse B. carinata germplasms that include accessions, advanced breeding lines, and varieties were used in this study. Reference data sets were generated using gas chromatography and the Soxhlet oil extraction method for fatty acid profile and oil content, respectively. Spectra data were taken from the wavenumber range of 11,500 to 4000 cm⁻¹ using the Fourier-transform near-infrared (FT-NIR) method. NIRS calibration equations were developed using partial least square (PLS) regression with OPUS software, version 7.5.1. Higher coefficient of determination (R²_val) and ratio of performance to deviation (RPD) > 3 were obtained for oleic acid (R²_val = 0.92, RPD = 3.6), linoleic acid (R²_val = 0.89, RPD = 3.2), linolenic acid (R²_val = 0.93, RPD = 3.8), erucic acid (R²_val = 0.92, RPD = 3.5), and oil content (R²_val = 0.93, RPD = 3.6). Thus, the NIRS calibration models for the aforementioned fatty acids and oil content were found to be strong enough for prediction. However, the calibration models for palmitic acid (R²_val = 0.78, RPD = 2.1) and stearic acid (R²_val = 0.75, RPD = 2.0) showed relatively smaller R²_val and thus became weaker in their prediction capacity. Despite their relatively lower R², the calibration equations for palmitic and stearic acids could be used for approximate estimation and rough screening purposes. In conclusion, the calibration models that we have developed will be useful in applying NIRS as a high-throughput, non-destructive method for the screening of large germplasms in terms of their fatty acid profiles and oil content during the oil quality breeding efforts conducted on B. carinata. Full article

With the constant progress of urbanization and industrialization, cadmium (Cd) has emerged as one of the heavy metals that pollute soil and water. The presence of Cd has a substantial negative impact on the growth and development of both animals and plants. The allotetraploid Brasscia. carinata, an oil crop in the biofuel industry, is known to produce seeds with a high percentage of erucic acid; it is also known for its disease resistance and widespread adaptability. However, there is limited knowledge regarding the tolerance of B. carinata to Cd and its physiological responses and gene expressions under exposure to Cd. Here, we observed that the tested B. carinata exhibited a strong tolerance to Cd (1 mmol/L CdCl₂ solution) and exhibited a significant ability to accumulate Cd, particularly in its roots, with concentrations reaching up to 3000 mg/kg. Additionally, we found that the total oil content of B. carinata seeds harvested from the Cd-contaminated soil did not show a significant change, but there were noticeable alterations in certain constituents. The activities of antioxidant enzymes, including catalase (CAT), superoxide dismutase (SOD), peroxidase (POD), and ascorbate peroxidase (APX), were observed to significantly increase after treatment with different concentrations of CdCl₂ solutions (0.25 mmol/L, 0.5 mmol/L, and 1 mmol/L CdCl₂). This suggests that these antioxidant enzymes work together to enhance Cd tolerance. Comparative transcriptome analysis was conducted to identify differentially expressed genes (DEGs) in the shoots and roots of B. carinata when exposed to a 0.25 mmol/L CdCl₂ solution for 7 days. A total of 631 DEGs were found in the shoots, while 271 DEGs were found in the roots. It was observed that these selected DEGs, which responded to Cd stress, also showed differential expression after exposure to PbCl₂. This suggests that B. carinata may employ a similar molecular mechanism when tolerating these heavy metals. The functional annotation of the DEGs showed enrichment in the categories of ‘inorganic ion transport and metabolism’ and ‘signal transduction mechanisms’. Additionally, the DEGs involved in ‘tryptophan metabolism’ and ‘zeatin biosynthesis’ pathways were found to be upregulated in both the shoots and roots of B. carinata, suggesting that the plant can enhance its tolerance to Cd by promoting the biosynthesis of plant hormones. These results highlight the strong Cd tolerance of B. carinata and its potential use as a Cd accumulator. Overall, our study provides valuable insights into the mechanisms underlying heavy metal tolerance in B. carinata. Full article

Members of the high-affinity potassium transporter (HKT) protein family regulate the uptake and homeostasis of sodium and potassium ions, but little research describes their roles in response to abiotic stresses in rapeseed (Brassica napus L.). In this study, we identified and characterized a total of 36 HKT genes from the species comprising the triangle of U model (U-triangle species): B. rapa, B. nigra, B. oleracea, B. juncea, B. napus, and B. carinata. We analyzed the phylogenetic relationships, gene structures, motif compositions, and chromosomal distributions of the HKT family members of rapeseed. Based on their phylogenetic relationships and assemblage of functional domains, we classified the HKT members into four subgroups, HKT1;1 to HKT1;4. Analysis of the nonsynonymous substitutions (Ka), synonymous substitutions (Ks), and the Ka/Ks ratios of HKT gene pairs suggested that these genes have experienced strong purifying selective pressure after duplication, with their evolutionary relationships supporting the U-triangle theory. Furthermore, the expression profiles of BnaHKT genes varies among potassium, phytohormone and heavy-metal treatment. Their repression provides resistance to heavy-metal stress, possibly by limiting uptake. Our results systematically reveal the characteristics of HKT family proteins and their encoding genes in six Brassica species and lay a foundation for further exploration of the role of HKT family genes in heavy-metal tolerance. Full article

Brassica carinata has received considerable attention as a renewable biofuel crop for semi-arid zones due to its high oil content and polyunsaturated fatty acids contents. It is important to develop new drought-resistant cultivars of B. carinata production to expand its areas into more arid regions. The accumulation of leaf cuticular wax on plant surfaces is one mechanism that reduces non-stomatal water loss, thus increasing drought resistance in plants. To explore phenotypic variations in cuticular wax in B. carinata, leaf waxes were extracted and quantified from a diversity panel consisting of 315 accessions. The results indicate that the accessions have a wide range of total leaf wax content (289–1356 µg dm⁻²), wax classes, and their components. The C₂₉ and C₃₁ homologues of alkanes, C₂₉ ketone homologue, C₂₉ secondary alcohol, and C₃₀ aldehyde were the most abundant leaf waxes extracted from B. carinata accessions. The high heritability values of these waxes point to the positive selection for high wax content during early generations of future B. carinata breeding programs. Positive correlation coefficients, combined with the effects of these waxes on leaf wax content accumulation, suggest that modifying specific wax content could increase the total wax content and enhance cuticle composition. The identified leaf wax content and compositions in B. carinata will lead to the future discovery of wax biosynthetic pathways, the dissection of its genetic regulatory networks, the identification of candidate genes controlling production of these waxes, and thus, develop and release new B. carinata drought-tolerant cultivars. Full article

Endophytic bacteria are known to influence vital activities of host plants. Endophytes can promote plant growth and provide a defense response against pathogens. The use of endophytes in crop production has the potential to reduce the application of fertilizer and pesticide input and thus improve the sustainability of crop production. In this study, we investigated the effects of seed inoculation with non-native endophytic bacteria, harvested from Brassica carinata, on oat (Avena sativa L.) growth with root vigor assays and greenhouse experiments. For root vigor assay experiments, seeds of two different oat cultivars were treated with 16 endophytic bacteria previously shown to promote growth benefits on multiple crop species. For the greenhouse experiments, the effect of seed inoculation with bacterial isolates was evaluated on ten oat cultivars at two fertilization levels. The root vigor assay showed that multiple isolates, including Bacillus licheniformis, Enterobacter kobei, B. halotolerans, B. cereus, B. aryabhattai, and Lysinibacillus fusiformis, had a positive effect on seedling root growth in one of the two oat cultivars. In the other cultivar, the bacterial isolates had either no effect or a negative effect on root growth. Greenhouse studies showed that the magnitude and direction of the effect of bacterial inoculation on oat growth varied with fertilization levels, bacterial strain, and oat cultivar. However, we identified two cultivars that were more responsive to bacterial inoculation than the others and for which bacterial inoculation of seed resulted in enhanced growth in several traits under both reduced and full nitrogen levels, and this response was observed for the two isolates tested. Our results show that inoculating oat seeds with non-native bacterial endophytes can promote root and shoot growth in oats. Developing biofertilizers that are effective across crop species, crop cultivars, and environmental conditions may be possible if cultivars are selected for their responsiveness across multiple bacterial isolates and in multiple growing environments. Overall, this study indicates that non-native endophytes could be considered for the development of biofertilizers with effectiveness across crop species. Full article