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Search Results (357)

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31 pages, 1182 KB  
Review
Egg By-Products: Composition, Bioactive Potential, and Utilization in the Circular Economy
by Plamen Saraliev, Nikolay Kolev, Desislava Vlahova-Vangelova, Stefan Dragoev and Desislav Balev
Biomass 2025, 5(4), 80; https://doi.org/10.3390/biomass5040080 - 12 Dec 2025
Viewed by 383
Abstract
Egg products are a convenient and safe form of eggs, possessing valuable nutritional and functional properties. The egg processing industry is responsible for the enormous amounts of biomass in the form of animal by-products (ABPs). According to EU legislation, the ABPs are under [...] Read more.
Egg products are a convenient and safe form of eggs, possessing valuable nutritional and functional properties. The egg processing industry is responsible for the enormous amounts of biomass in the form of animal by-products (ABPs). According to EU legislation, the ABPs are under strict control from the formation to the disposal of biomass, as they carry a risk to the ecosystem and public health. For this reason, restrictions have been introduced on their use after disposal, ranging from bioactive applications in medical, cosmetic, and pharmaceutical products, as well as feed. The shells are subject to special conditions for processing and use. The by-products of egg breaking are divided into solid (eggshells and eggshell membranes) and liquid (technical albumen) by-products. The biological value is determined by the composition, which varies significantly across the by-products. In the context of the circular economy, all egg by-products contain valuable substances that can be used in food and non-food industries. First, eggshells are the leading by-product, composing 95% of the inorganic substance calcium carbonate, which, after processing, can be used in agriculture, food and feed industries, and medicine. Second, there is a liquid by-product containing proteins from the egg white and a small part of fats from the yolk. Literature data on this by-product are scarce, but there is information about its use as a feed additive, while the extracted and purified proteins can be useful in pharmacy. Egg membranes constitute only 1% of the egg mass, but humanity has long known about the benefits of collagen, keratin, and glycosaminoglycans, including hyaluronic acid, which compose this material. The processed membranes can be used as a food additive, in cosmetics, medicine, or pharmacy, just like other egg by-products mentioned above. This literature review focuses on the possible methods and techniques for processing by-products and their potential application. The literature sources in this review have been selected according to their scientific and practical applicability. The utilization of these by-products not only reduces the impact on the environment but also facilitates the creation of value-added materials. Full article
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36 pages, 106084 KB  
Article
Critical Factors for the Application of InSAR Monitoring in Ports
by Jaime Sánchez-Fernández, Alfredo Fernández-Landa, Álvaro Hernández Cabezudo and Rafael Molina Sánchez
Remote Sens. 2025, 17(23), 3900; https://doi.org/10.3390/rs17233900 - 30 Nov 2025
Viewed by 335
Abstract
Ports pose distinctive monitoring challenges due to harsh marine conditions, mixed construction typologies, and heterogeneous ground conditions. These factors complicate the routine use of satellite InSAR, especially when medium-resolution scatterers must be reliably attributed to specific assets for risk and asset management decisions. [...] Read more.
Ports pose distinctive monitoring challenges due to harsh marine conditions, mixed construction typologies, and heterogeneous ground conditions. These factors complicate the routine use of satellite InSAR, especially when medium-resolution scatterers must be reliably attributed to specific assets for risk and asset management decisions. In current practice, persistent and distributed scatterer (PS/DS) points are often interpreted in map view without an explicit positional uncertainty model or systematic linkage to three-dimensional infrastructure geometry. We present an end-to-end Differential InSAR framework tailored to large ports that fuses medium-resolution Sentinel-1 Level 2 Co-registered Single-Look Complex (L2-CSLC) stacks with high-resolution airborne LiDAR at the post-processing stage. For the Port of Bahía de Algeciras (Spain), we process 123 Sentinel-1A/B images (2020–2022) in ascending and descending geometry using PS/DS time-series analysis with ETAD-like timing corrections and RAiDER tropospheric/ionospheric mitigation. LiDAR is then used to (i) derive look-specific shadow/layover masks and (ii) perform a whitening-transformed nearest-neighbor association that assigns PS/DS points to LiDAR points under an explicit range–azimuth–cross-range (RAC) uncertainty ellipsoid. The RAC standard deviations (σr,σa,σc) are derived from the effective CSLC range/azimuth resolution and from empirical height correction statistics, providing a geometry- and data-informed prior on positional uncertainty. Finally, we render dual-geometry red–green composites (ascending to R, descending to G; shared normalization) on the LiDAR point cloud, enabling consistent inspection in plan and elevation. Across asset types, rigid steel/concrete elements (trestles, quay faces, and dolphins) sustain high coherence, small whitened offsets, and stable backscatter in both looks; cylindrical storage tanks are bright but exhibit look-dependent visibility and larger cross-range residuals due to height and curvature; and container yards and vessels show high amplitude dispersion and lower temporal coherence driven by operations. Overall, LiDAR-assisted whitening-based linking reduces effective positional ambiguity and improves structure-specific attribution for most scatterers across the port. The fusion products, geometry-aware linking plus three-dimensional dual-geometry RGB, enhance the interpretability of medium-resolution SAR and provide a transferable, port-oriented basis for integrating deformation evidence into risk and asset management workflows. Full article
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15 pages, 16180 KB  
Article
Gas–Solid Phase Separation of Active Brownian Particles Under Confinement of Hard Walls
by Hao Zhang, Shenghua Xu, Shuangyang Zou, Hongwei Zhou, Wenze Ouyang and Jun Zhong
Nanomaterials 2025, 15(22), 1746; https://doi.org/10.3390/nano15221746 - 20 Nov 2025
Viewed by 566
Abstract
By means of computer simulations, we have investigated the gas–solid phase separation of active Brownian particles (ABPs) under the confinement of two hard walls, distinct from the gas–liquid phase separation typically seen in bulk systems. Our results show that the distance (D) between [...] Read more.
By means of computer simulations, we have investigated the gas–solid phase separation of active Brownian particles (ABPs) under the confinement of two hard walls, distinct from the gas–liquid phase separation typically seen in bulk systems. Our results show that the distance (D) between the hard walls plays a crucial role. Increasing D may facilitate the formation of gas–solid phase separation perpendicular to the hard walls, while decreasing D may suppress such phase separation. Interestingly, when D is decreased further and the lateral system size is increased accordingly to maintain a constant volume, a new reoriented phase separation pattern in the system emerges, i.e., the gas–solid phase coexistence can be found in those layers parallel to the inner surfaces of two hard walls. These intriguing findings illustrate how ABPs can achieve simultaneous localization and crystallization under imposed boundary confinement, thereby fundamentally altering the pathway of phase separation. Also, such understanding may provide a valuable pathway for optimizing the design of systems full of active matters such as micro-robotics or targeted delivery platforms. Full article
(This article belongs to the Section Theory and Simulation of Nanostructures)
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10 pages, 313 KB  
Article
Can We Speak of an “Interaction” Between Ancient Christian Thought and Classical Greek Literature? Two Case Studies (The Trinity and Gen. 1:26)
by Sébastien Morlet
Religions 2025, 16(11), 1468; https://doi.org/10.3390/rel16111468 - 19 Nov 2025
Viewed by 403
Abstract
This paper tries to analyse what “interaction” with classical Greek literature may mean in the case of ancient Christian texts. Two case studies show the existence of a “hermeneutical circle” between the reception of Greek texts among Christians and Christian ideas. The Christians [...] Read more.
This paper tries to analyse what “interaction” with classical Greek literature may mean in the case of ancient Christian texts. Two case studies show the existence of a “hermeneutical circle” between the reception of Greek texts among Christians and Christian ideas. The Christians were influenced by the Greek texts they commented on, but, on the other hand, their reception of such texts was determined by their Christian intellectual presuppositions. The first case (the emergence of the “Trinity” among the “apologists”) illustrates a cross-reading of Matthew 28:19 and Ps.-Plato’s Letter 2. The second case shows how the term ὁμοίωσις, in Genesis 1:26, was read in the light of Theaetetus 176a-b, and vice versa. Full article
(This article belongs to the Special Issue The Interaction of Early Christianity with Classical Literature)
12 pages, 1203 KB  
Review
Amylase Binding to Oral Streptococci: A Key Interaction for Human Oral Microbial Ecology, Adaptation and Fitness
by Amarpreet Sabharwal, Elaine M. Haase and Frank A. Scannapieco
Biomolecules 2025, 15(11), 1616; https://doi.org/10.3390/biom15111616 - 18 Nov 2025
Viewed by 449
Abstract
The interaction between human salivary alpha-amylase (HSAmy) and amylase-binding oral streptococci (ABS) helps determine the bacteria that colonize the oral cavity by establishing dental biofilms. Streptococci are important pioneer species of the oral cavity and influence oral health as well as common diseases [...] Read more.
The interaction between human salivary alpha-amylase (HSAmy) and amylase-binding oral streptococci (ABS) helps determine the bacteria that colonize the oral cavity by establishing dental biofilms. Streptococci are important pioneer species of the oral cavity and influence oral health as well as common diseases such as dental caries. Various oral streptococcal species express distinct amylase-binding proteins, among which amylase-binding protein A (AbpA), encoded by the abpA gene in Streptococcus gordonii and several other species, which is the most extensively studied. Amylase binding facilitates microbial adhesion to host surfaces and biofilm formation and enables bacteria to harness the host’s amylase enzymatic activity at their cell surface, enhancing their capacity to metabolize dietary starch for nutritional gain. Additionally, amylase binding may also influence bacterial cell division and stress tolerance by engaging novel bacterial signaling pathways. From an evolutionary perspective, both Neanderthals and modern humans exhibit functional adaptations in nutrient metabolism, including selection for salivary amylase-binding oral streptococci, highlighting the importance of microbial co-adaptation in response to host diet. Further research is warranted to elucidate the broader roles of amylase binding to bacteria in host-bacterial signaling, bacterial cell division and fitness and the evolutionary trajectory of the oral microbiome. Full article
(This article belongs to the Special Issue Digestive Enzymes in Health and Disease)
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13 pages, 5715 KB  
Article
Polymer Systems with Correlated Activity: Stars Versus Linear Chains
by Aleksandr I. Buglakov, Prabha Chuphal, Vladimir Yu. Rudyak, Alexander V. Chertovich and Vladimir V. Palyulin
Molecules 2025, 30(22), 4442; https://doi.org/10.3390/molecules30224442 - 17 Nov 2025
Viewed by 519
Abstract
Using molecular dynamics simulations, we explore the impact of correlated monomer activity and star topology on the structure and dynamics of active polymers. Unlike uncorrelated active Brownian particle (ABP) stars, correlated activity induces a rather steep stretching of the star polymer at intermediate [...] Read more.
Using molecular dynamics simulations, we explore the impact of correlated monomer activity and star topology on the structure and dynamics of active polymers. Unlike uncorrelated active Brownian particle (ABP) stars, correlated activity induces a rather steep stretching of the star polymer at intermediate activity levels. This stretching is characterized by transitions between distinct, metastable states defined by the coordinated movement of the arms, leading to novel collective dynamics. The behavior is consistent with experimental observations of active oligomers, highlighting the critical role of activity correlations for the understanding and modeling of active polymers. Full article
(This article belongs to the Section Computational and Theoretical Chemistry)
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23 pages, 10735 KB  
Article
Multi-Omics Deciphers Divergent Mechanisms in Differentially Cardiac-Remodeled Yili Horses Under Conditions of Equivalent Power Output
by Tongliang Wang, Xixi Yang, Wanlu Ren, Jun Meng, Xinkui Yao, Hongzhong Chu, Runchen Yao, Manjun Zhai and Yaqi Zeng
Animals 2025, 15(22), 3251; https://doi.org/10.3390/ani15223251 - 9 Nov 2025
Viewed by 390
Abstract
Exercise performance is a critical trait for evaluating the economic and breeding value of working and athletic horses, with cardiac structure and function serving as essential physiological determinants of athletic capacity. This study aimed to investigate the multi-omics response mechanisms associated with varying [...] Read more.
Exercise performance is a critical trait for evaluating the economic and breeding value of working and athletic horses, with cardiac structure and function serving as essential physiological determinants of athletic capacity. This study aimed to investigate the multi-omics response mechanisms associated with varying degrees of cardiac remodeling under identical exercise intensity. Twenty 2-year-old Yili horses were selected and categorized based on echocardiographic parameters into a high cardiac remodeling group (BH; EDV > 500 mL, SV > 350 mL, EF > 66%) and a low cardiac remodeling group (BL; EDV < 450 mL, SV < 330 mL, EF < 64%). Blood samples were collected before and after the 1000 m constant-speed test (pre-test high cardiac remodeling group (BH, n = 10), post-test high cardiac remodeling group (AH, n = 10), pre-test low cardiac remodeling group (BL, n = 10), post-test low cardiac remodeling group (AL, n = 10)), and integrated metabolomic, transcriptomic, and miRNA profiling were conducted to systematically characterize molecular responses to exercise-induced stress. Metabolomic analysis identified a total of 1936 lipid metabolites, with the BH group exhibiting stronger post-exercise lipid mobilization and significant enrichment of sphingolipid signaling pathways. Transcriptomic and miRNA analyses further revealed that key miRNAs in the BH group, including miR-186, miR-23a/b, and the let-7 family, along with their target genes (e.g., GNB4, RGS5, ALAS2), were involved in fine regulation of cardiac electrophysiology, oxidative stress, and energy metabolism. Integrated analysis indicated that the AH vs. BH comparison uniquely enriched pathways related to glycine-serine-threonine metabolism and glycosylphosphatidylinositol (GPI)-anchor biosynthesis, whereas the AL vs. BL comparison showed unique enrichment of α-linolenic acid and arachidonic acid metabolism pathways. Ultimately, multi-omics integration identified that in the BH group, eca-let-7d, eca-let-7e, eca-miR-196b, eca-miR-2483, and eca-miR-98 regulate ALAS2 and, together with GCSH, influence the enrichment of lipids such as PS(17:0_16:1), PS(18:0_18:1), and PS(20:0_18:1). These lipids participate in glycine, serine, and threonine metabolism through complex pathways, collectively modulating energy supply, inflammatory responses, and muscle function during exercise. This study reveals the molecular mechanisms by which horses with high cardiac remodeling maintain energy homeostasis and myocardial protection during exercise. Full article
(This article belongs to the Section Equids)
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29 pages, 4325 KB  
Article
A 1-Dimensional Physiological Signal Prediction Method Based on Composite Feature Preprocessing and Multi-Scale Modeling
by Peiquan Chen, Jie Li, Bo Peng, Zhaohui Liu and Liang Zhou
Sensors 2025, 25(21), 6726; https://doi.org/10.3390/s25216726 - 3 Nov 2025
Viewed by 744
Abstract
The real-time, precise monitoring of physiological signals such as intracranial pressure (ICP) and arterial blood pressure (BP) holds significant clinical importance. However, traditional methods like invasive ICP monitoring and invasive arterial blood pressure measurement present challenges including complex procedures, high infection risks, and [...] Read more.
The real-time, precise monitoring of physiological signals such as intracranial pressure (ICP) and arterial blood pressure (BP) holds significant clinical importance. However, traditional methods like invasive ICP monitoring and invasive arterial blood pressure measurement present challenges including complex procedures, high infection risks, and difficulties in continuous measurement. Consequently, learning-based prediction utilizing observable signals (e.g., BP/pulse waves) has emerged as a crucial alternative approach. Existing models struggle to simultaneously capture multi-scale local features and long-range temporal dependencies, while their computational complexity remains prohibitively high for meeting real-time clinical demands. To address this, this paper proposes a physiological signal prediction method combining composite feature preprocessing with multiscale modeling. First, a seven-dimensional feature matrix is constructed based on physiological prior knowledge to enhance feature discriminative power and mitigate phase mismatch issues. Second, a network architecture CNN-LSTM-Attention (CBAnet), integrating multiscale convolutions, long short-term memory (LSTM), and attention mechanisms is designed to effectively capture both local waveform details and long-range temporal dependencies, thereby improving waveform prediction accuracy and temporal consistency. Experiments on GBIT-ABP, CHARIS, and our self-built PPG-HAF dataset show that CBAnet achieves competitive performance relative to bidirectional long short-term Memory (BiLSTM), convolutional neural network-long short-term memory network (CNN-LSTM), Transformer, and Wave-U-Net baselines across Root Mean Square Error (RMSE), Mean Absolute Error (MAE), and Coefficient of Determination (R2). This study provides a promising, efficient approach for non-invasive, continuous physiological parameter prediction. Full article
(This article belongs to the Section Biomedical Sensors)
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15 pages, 254 KB  
Article
Comparative Effects of Arthrobacter bussei-Derived Powder and Probiotics, and Haematococcus pluvialis Powder, as Dietary Supplements for Pacific White Shrimp (Litopenaeus vannamei)
by Soohwan Kim, Hyun Mi Jung, Seunghan Lee and Hyon-Sob Han
Fishes 2025, 10(11), 543; https://doi.org/10.3390/fishes10110543 - 24 Oct 2025
Viewed by 446
Abstract
This study evaluated how dietary supplementation with Haematococcus pluvialis powder (HPP), Arthrobacter bussei powder (ABP), and A. bussei probiotics affects growth, whole-body composition, non-specific immunity, antioxidant capacity, and nutrient digestibility in Pacific white shrimp (Litopenaeus vannamei). Juvenile shrimps were fed for [...] Read more.
This study evaluated how dietary supplementation with Haematococcus pluvialis powder (HPP), Arthrobacter bussei powder (ABP), and A. bussei probiotics affects growth, whole-body composition, non-specific immunity, antioxidant capacity, and nutrient digestibility in Pacific white shrimp (Litopenaeus vannamei). Juvenile shrimps were fed for 8 weeks with five diets: a control diet (CON), H. pluvialis powder (HPP, 1%), A. bussei powder (ABP, 1%), or A. bussei probiotics at 105 (ABL) or 108 (ABH) CFU g−1 feed. Shrimp fed the ABP diet exhibited the highest final body weight, weight gain, and protein efficiency ratio, with a significantly improved feed conversion ratio than that of CON, ABL, and ABH groups. The HPP group exhibited significantly better growth than that of the control. Regarding immunity and antioxidant responses, lysozyme and phenoloxidase specific activities, as well as glutathione peroxidase and superoxide dismutase specific activities, were significantly enhanced in shrimp fed ABP and HPP diets, whereas malondialdehyde levels were significantly reduced compared with those in CON. Apparent crude protein digestibility was significantly higher in all supplemented diets than those in the CON group, with ABP showing the highest value. ABP and HPP supplementation improved growth, protein digestibility, and immune-antioxidant responses in L. vannamei, whereas probiotic forms showed limited effects. ABP is a superior functional feed additive than its probiotic form for enhancing productivity and health in shrimp aquaculture. Full article
(This article belongs to the Section Nutrition and Feeding)
31 pages, 3420 KB  
Systematic Review
From Adhesion to Invasion: Integrins, Focal Adhesion Signaling, and Actin Binding Proteins in Cervical Cancer Progression—A Scoping Review
by Marta Hałas-Wiśniewska, Patryk Zawadka, Wioletta Arendt and Magdalena Izdebska
Cells 2025, 14(20), 1640; https://doi.org/10.3390/cells14201640 - 21 Oct 2025
Cited by 1 | Viewed by 1476
Abstract
Background: Cervical cancer (CC) is one of the most common malignancies in women worldwide. Its progression involves a cascade of processes, including proliferation, migration, invasion, and metastasis. Each stage is regulated by specific signaling pathways. Objective: This scoping review aimed to map current [...] Read more.
Background: Cervical cancer (CC) is one of the most common malignancies in women worldwide. Its progression involves a cascade of processes, including proliferation, migration, invasion, and metastasis. Each stage is regulated by specific signaling pathways. Objective: This scoping review aimed to map current evidence on the role of cell adhesion-related molecules, including integrins, focal adhesion (FA) proteins, and actin-binding proteins (ABPs), in CC progression. These protein groups act in a coordinated manner—integrins perceive and transmit extracellular matrix (ECM) signals, FA proteins mediate intracellular signaling, and ABPs reorganize the cytoskeleton, ensuring the continuity of adhesion and motility processes. Methods: A structured literature search was conducted for studies published between 2015 and 2025. Eligible articles described the role of adhesion-related proteins in migration, invasion, or EMT in CC. Data were synthesized thematically according to protein families. Results: The evidence highlights integrins, FA/FAK, and ABPs as interconnected regulators coordinating ECM signaling and cytoskeletal remodeling during CC progression. Their dysregulation is associated with enhanced migration, EMT induction, angiogenesis, and therapy resistance. Conclusions: This review provides a unique, integrated perspective linking adhesion molecules with invasion mechanisms in CC progression, providing new insights into their interplay. Understanding the interaction between these proteins is therefore a crucial step in the treatment of CC and may facilitate the discovery of biomarkers and support the development of targeted therapies. Full article
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25 pages, 6753 KB  
Article
The Anti-Digestive Characteristics, Effects of Prebiotic Properties on NC and T2DM Mice of Achyranthes bidentata Polysaccharide, and the Hypoglycemic Effect of Its Fermentation Products
by Ting Xia, Zhenjie Liu, Wenya Ding, Liting Deng, Xinyang Ning and Jianfang Feng
Nutrients 2025, 17(20), 3249; https://doi.org/10.3390/nu17203249 - 16 Oct 2025
Viewed by 696
Abstract
Background/Objectives: Achyranthes bidentata (AB), recognized as a food and traditional Chinese medicine, exhibits notable biological activity. Our previous study showed the hypoglycemic effect of Achyrantha bidentata polysaccharide (ABP). The properties and digestion process of polysaccharides affect their pharmacological activities. The digestion characteristics [...] Read more.
Background/Objectives: Achyranthes bidentata (AB), recognized as a food and traditional Chinese medicine, exhibits notable biological activity. Our previous study showed the hypoglycemic effect of Achyrantha bidentata polysaccharide (ABP). The properties and digestion process of polysaccharides affect their pharmacological activities. The digestion characteristics of ABP are unclear. In this study, we aimed to explore the characteristics of ABP’s simulated digestion and its prebiotic properties and hypoglycemic effects. Methods: We used simulated digestion methods to investigate the alterations in ABP levels in the process of digestion and fermentation. Animal experiments were used to compare the effects of the prebiotic properties of ABP on normal control (NC) and type 2 diabetes mellitus (T2DM) mice. Then, in order to further verify the hypoglycemic effect of ABP after fermentation (ABPF), α-glucosidase activity and glucose uptake in Caco-2 cells were examined. Results: The results showed that ABP was anti-digestive and mainly degraded by the intestinal flora. Moreover, ABP showed a stronger promoting advantage against beneficial bacteria and inhibited harmful bacteria in the T2DM mice. Compared with NC mice, after ABP treatment, T2DM mice showed a higher increase in levels of short-chain fatty acids (SCFAs). Additionally, the glucose uptake and α-glucosidase activity of Caco-2 cells were significantly decreased after treatment with ABPF. Conclusions: These results underscore the potential of ABP as a prebiotic candidate for gut health promotion and T2DM alleviation. Full article
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31 pages, 921 KB  
Article
Relationship Between RAP and Multi-Modal Cerebral Physiological Dynamics in Moderate/Severe Acute Traumatic Neural Injury: A CAHR-TBI Multivariate Analysis
by Abrar Islam, Kevin Y. Stein, Donald Griesdale, Mypinder Sekhon, Rahul Raj, Francis Bernard, Clare Gallagher, Eric P. Thelin, Francois Mathieu, Andreas Kramer, Marcel Aries, Logan Froese and Frederick A. Zeiler
Bioengineering 2025, 12(9), 1006; https://doi.org/10.3390/bioengineering12091006 - 22 Sep 2025
Viewed by 833
Abstract
Background: The cerebral compliance (or compensatory reserve) index, RAP, is a critical yet underutilized physiological marker in the management of moderate-to-severe traumatic brain injury (TBI). While RAP offers promise as a continuous bedside metric, its broader cerebral physiological context remains partly understood. This [...] Read more.
Background: The cerebral compliance (or compensatory reserve) index, RAP, is a critical yet underutilized physiological marker in the management of moderate-to-severe traumatic brain injury (TBI). While RAP offers promise as a continuous bedside metric, its broader cerebral physiological context remains partly understood. This study aims to characterize the burden of impaired RAP in relation to other key components of cerebral physiology. Methods: Archived data from 379 moderate-to-severe TBI patients were analyzed using descriptive and threshold-based methods across three RAP states (impaired, intact/transitional, and exhausted). Agglomerative hierarchical clustering, principal component analysis, and kernel-based clustering were applied to explore multivariate covariance structures. Then, high-frequency temporal analyses, including vector autoregressive integrated moving average impulse response functions (VARIMA IRF), cross-correlation, and Granger causality, were performed to assess dynamic coupling between RAP and other physiological signals. Results: Impaired and exhausted RAP states were associated with elevated intracranial pressure (p = 0.021). Regarding AMP, impaired RAP was associated with elevated levels, while exhausted RAP was associated with reduced pulse amplitude (p = 3.94 × 10−9). These two RAP states were also associated with compromised autoregulation and diminished perfusion. Clustering analyses consistently grouped RAP with its constituent signals (ICP and AMP), followed by brain oxygenation parameters (brain tissue oxygenation (PbtO2) and regional cerebral oxygen saturation (rSO2)). Cerebral autoregulation (CA) indices clustered more closely with RAP under impaired autoregulatory states. Temporal analyses revealed that RAP exhibited comparatively stronger responses to ICP and arterial blood pressure (ABP) at 1-min resolution. Moreover, when comparing ICP-derived and near-infrared spectroscopy (NIRS)-derived CA indices, they clustered more closely to RAP, and RAP demonstrated greater sensitivity to changes in these ICP-derived CA indices in high-frequency temporal analyses. These trends remained consistent at lower temporal resolutions as well. Conclusion: RAP relationships with other parameters remain consistent and differ meaningfully across compliance states. Integrating RAP into patient trajectory modelling and developing predictive frameworks based on these findings across different RAP states can map the evolution of cerebral physiology over time. This approach may improve prognostication and guide individualized interventions in TBI management. Therefore, these findings support RAP’s potential as a valuable metric for bedside monitoring and its prospective role in guiding patient trajectory modeling and interventional studies in TBI. Full article
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26 pages, 4388 KB  
Article
Recurrent Duplication, Testis-Biased Expression, and Functional Diversification of Esf2/ABT1 Family Genes in Drosophila
by Elizaveta D. Davydova, Alexei A. Kotov, Alina V. Chernizova, Ekaterina Yu. Yakovleva and Ludmila V. Olenina
Insects 2025, 16(9), 956; https://doi.org/10.3390/insects16090956 - 11 Sep 2025
Viewed by 912
Abstract
Gene duplications are considered to be the major evolutionary resource of novel functions. The gene family Esf2/ABP1 is conserved in metazoan organisms from yeast to humans. Here we performed a search and characterization of Esf2/ABP1 homologs in the Drosophila genus. Whereas in the [...] Read more.
Gene duplications are considered to be the major evolutionary resource of novel functions. The gene family Esf2/ABP1 is conserved in metazoan organisms from yeast to humans. Here we performed a search and characterization of Esf2/ABP1 homologs in the Drosophila genus. Whereas in the majority of Drosophila species this gene family is represented by only a single gene, in the melanogaster and suzukii subgroups recurrent gene duplications arose, providing 47 homologous genes located on the X chromosome. To study the evolutionary history of duplicates, we performed phylogenetic, functional domain, and tissue-specific expression analyses. We revealed a male-specific and testis-biased transcription pattern of duplicated copies in Drosophila melanogaster and Drosophila sechellia compared to ubiquitous expression of the parental gene. The amplification of 21 repeated paralogs within the heterochromatic piRNA cluster resulted in the ovarian-specific transformation of these repeats into piRNAs in D. melanogaster. In three species of the suzukii subgroup, Esf2/ABP1 genes evolved with domain diversification: in addition to RNA-binding ABT1-like domain preservation, all homologous proteins acquired expanded intrinsically disordered regions. By studying the duplicated copies of the Esf2/ABP1 family in Drosophila, we offer insight into how novel gene functions emerge and are maintained, contributing to life’s diversity and complexity. Full article
(This article belongs to the Special Issue Insect Transcriptomics)
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21 pages, 8017 KB  
Article
Genomic Characterization of the Honeybee–Probiotic Strain Ligilactobacillus salivarius A3iob
by Mariano Elean, Alejandro Arroyo Guerra, Leonardo Albarracin, Keita Nishiyama, Haruki Kitazawa, M. Carina Audisio and Julio Villena
Animals 2025, 15(17), 2606; https://doi.org/10.3390/ani15172606 - 5 Sep 2025
Cited by 1 | Viewed by 984
Abstract
Background: Previous studies have demonstrated the beneficial effects of Ligilactobacillus salivarius A3iob on honeybee (Apis mellifera) colonies’ health and honey production. The present work aimed to assess the genomic characteristics of the A3iob strain to understand its ability to improve bees’ [...] Read more.
Background: Previous studies have demonstrated the beneficial effects of Ligilactobacillus salivarius A3iob on honeybee (Apis mellifera) colonies’ health and honey production. The present work aimed to assess the genomic characteristics of the A3iob strain to understand its ability to improve bees’ health. Methods: The comparative genomic analysis was performed with the A3iob genome and the genomes of probiotic L. salivarius strains of human, porcine, and chicken origin, as well as bacteria isolated from the bees’ gut. The analysis included the examination of metabolic genes and functional genes related to adhesion, the production of bioactive compounds, the modulation of the host’s immune system, and antimicrobial substances. Genes associated with antimicrobial resistance and virulence were also analyzed. Results: In silico studies revealed that L. salivarius A3iob possesses genes for glycosyltransferases (GTs) from the families GT2 and GT4, like Bombella apis and Bombella intestinalis, and glycosylhydrolases (GH) from the families GH1, GH2, GH13, GH36, GH65, and GH177, similar to Apilactobacillus kunkeei, Enterococcus durans, and bifidobacteria isolated from the bee intestine. The A3iob strain also has a unique genetic profile with a high number of secretion system genes and adhesion genes, including the ones coding for the SecA2/Y2 system, the mucus-binding proteins MucBP1, MucBP2, and MucBP3, and a pilus cluster (pilA, SpaA, SpaB, and sorteaseA) that has only been described in five strains of the L. salivarius species and in the intestinal bee-derived strain E. durans EDD2, which could be involved in the successful colonization of the A3iob strain in the bee gastrointestinal tract. Additionally, L. salivarius A3iob showed the presence of exopolysaccharide biosynthesis clusters described in the probiotic L. salivarius UCC118. Genes related to oxidative stress response (thioredoxin and NrdH-redoxin systems) and the bacteriocin genes abp118A and abp118B were found in the A3iob genome. L. salivarius A3iob does not harbor virulence or antibiotic resistance genes. Conclusions: The genomic characterization of L. salivarius A3iob performed in this work provides some clues about the genetic mechanisms underlying its probiotic properties, paving the way for future research aimed at improving bees’ health and productivity in the face of environmental challenges. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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17 pages, 1288 KB  
Article
Effect of Different Plastics on Mechanical Properties of Concrete
by Madiha Z. J. Ammari, Halil Sezen and Jose Castro
Constr. Mater. 2025, 5(3), 60; https://doi.org/10.3390/constrmater5030060 - 25 Aug 2025
Cited by 1 | Viewed by 1543
Abstract
In this research work, five different types of post-consumer plastics were mechanically ground into fine aggregate, and each type was used to prepare 2 in. (50 mm) mortar cubes by partial volumetric replacement of the sand. The purpose is to evaluate the effect [...] Read more.
In this research work, five different types of post-consumer plastics were mechanically ground into fine aggregate, and each type was used to prepare 2 in. (50 mm) mortar cubes by partial volumetric replacement of the sand. The purpose is to evaluate the effect of the plastic type and its shape on the density and the compressive strength of concrete. The plastic products used in this study are usually not collected by curbside recycling facilities and are discarded in landfills or incinerated. The different types of plastics investigated were Polyethylene terephthalate (PET), High-Density Polyethylene (HDPE), Polypropylene (PP), Polystyrene (PS), and Acrylonitrile Butadiene Styrene (ABS). A total of 180 cubes with 5%, 10%, and 15% replacement were prepared and tested for their densities at the age of 28 days and their compressive strengths at the ages of 7 and 28 days. This work concluded by proposing general equations to predict the reduction in the density and compressive strength of the mortar with the increment in the plastic replacement. Full article
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