Search Results (28)

Deforestation driven by plantations, such as Pinus patula Schiede ex Schltdl. et Cham., is a major cause of biodiversity and functional loss in tropical ecosystems. We assessed the diversity and composition of lichens and bryophytes in four size categories of pine cones, small (3–5 cm), medium (5.1–8 cm), large (8.1–10 cm), and very large (10.1–13 cm), with a total of 150 pine cones examined, where the occurrence and cover of lichen and bryophyte species were recorded. Identification keys based on morpho-anatomical features were used to identify lichens and bryophytes. In addition, for lichens, secondary metabolites were tested using spot reactions with potassium hydroxide, commercial bleach, and Lugol’s solution, and by examining the specimens under ultraviolet light. To evaluate the effect of pine cone size on species richness, the Kruskal–Wallis test was conducted, and species composition among cones sizes was compared using multivariate analysis. A total of 48 taxa were recorded on cones, including 41 lichens and 7 bryophytes. A total of 39 species were found on very large cones, 37 species on large cones, 35 species on medium cones, and 24 species on small cones. This is comparable to the diversity found in epiphytic communities of pine plantations. Species composition was influenced by pine cone size, differing from small in comparison with very large ones. The PERMANOVA analyses revealed that lichen and bryophyte composition varied significantly among the pine cone categories, explaining 21% of the variance. Very large cones with specific characteristics harbored different communities than those on small pine cones. The presence of lichen and bryophyte species on the pine cones from managed Ecuadorian P. patula plantations may serve as refugia for the conservation of biodiversity. Pine cones and their scales (which range from 102 to 210 per cone) may facilitate colonization of new areas by dispersal agents such as birds and rodents. The scales often harbor lichen and bryophyte propagules as well as intact thalli, which can be effectively dispersed, when the cones are moved. The prolonged presence of pine cones in the environment further enhances their role as possible dispersal substrates over extended periods. To our knowledge, this is the first study worldwide to examine pine cones as substrates for lichens and bryophytes, providing novel insights into their potential role as microhabitats within P. patula plantations and forest landscapes across both temperate and tropical zones. Full article

Temperature fluctuations caused by climate change and global warming pose a threat to fish. The burbot (lota lota) population is particularly sensitive to increased water temperature, but the systematic impacts of high-temperature exposure on their liver and intestinal health remain unclear. In January of 2025, we collected wild adult burbot individuals from the Ussuri River (water temperature: about 2 °C), China. The burbot were exposed to 2 °C, 7 °C, 12 °C, 17 °C, and 22 °C environments for 96 h; then, the liver and intestinal contents were subsequently collected for histopathology observation, immunohistochemistry, biochemical index assessment, and transcriptome/16S rDNA sequencing analysis. There was obvious liver damage including hepatocyte necrosis, fat vacuoles, and cellular peripheral nuclei. Superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GSH-Px) activities were elevated and subsequently decreased. Additionally, the malondialdehyde (MDA) level significantly increased with increasing temperature. These results indicate that 7 °C (heat stress temperature), 12 °C (tipping point for normal physiological metabolism status), 17 °C (tipping point for individual deaths), and 22 °C (thermal limit) are critical temperatures in terms of the physiological response of burbot during their breeding period. In the hepatic transcriptome profiling, 6538 differentially expressed genes (DEGs) were identified, while KEGG enrichment analysis showed that high-temperature stress could affect normal liver function by regulating energy metabolism, immune, and apoptosis-related pathways. Microbiomics also revealed that acute heat stress could change the intestinal microbe community structure. Additionally, correlation analysis suggested potential regulatory relationships between intestinal microbe taxa and immune/apoptosis-related DEGs in the liver. This study revealed the potential impact of environmental water temperature changes in cold habitats in winter on the physiological adaptability of burbot during the breeding period and provides new insights for the ecological protection of burbot in the context of global climate change and habitat warming. Full article

Understanding the biodiversity of aquatic communities and the underlying mechanisms that shape biodiversity patterns and community dynamics is crucial for the effective conservation and management of freshwater ecosystems. However, traditional survey methods often fail to comprehensively capture species diversity, particularly for low-abundance taxa. Moreover, studies integrating both metazoan and fish communities at fine spatial scales remain limited. To address these gaps, we employed a multi-marker eDNA metabarcoding approach, targeting both the 12S and 18S rRNA gene regions, to comprehensively investigate the composition of metazoan and fish communities in the Yujiang River. A total of 12 metazoan orders were detected, encompassing 15 families, 21 genera, and 19 species. For the fish community, 32 species were identified, belonging to 25 genera, 10 families, and 7 orders. Among these, Adula falcatoides and Coptodon zillii were identified as the most prevalent and abundant metazoan and fish species, respectively. Notably, the most prevalent fish species, C. zillii and Oreochromis niloticus, are both recognized as invasive species. The Bray–Curtis distance of metazoa (average: 0.464) was significantly lower than that of fish communities (average: 0.797), suggesting higher community heterogeneity among fish assemblages. Beta-diversity decomposition indicated that variations in the metazoan and fish communities were predominantly driven by species replacement (turnover) (65.4% and 70.9% for metazoa and fish, respectively) rather than nestedness. Mantel tests further revealed that species turnover in metazoan communities was most strongly influenced by water temperature, while fish community turnover was primarily affected by water transparency, likely reflecting the physiological sensitivity of metazoans to thermal gradients and the dependence of fish on visual cues for foraging and habitat selection. In addition, a co-occurrence network of metazoan and fish species was constructed, highlighting potential predator-prey interactions between native species and Corbicula fluminea, which emerged as a potential keystone species. Overall, this study demonstrates the utility of multi-marker eDNA metabarcoding in characterizing aquatic community structures and provides new insights into the spatial dynamics and species interactions within river ecosystems. Full article

The Costa Brava, a Mediterranean coastal strip spanning ca. 250 km (in NE Spain), is a hotspot of plant invasions. To address this issue, the LIFE medCLIFFS project was launched to improve the management of invasive species along sea cliffs in the region. The initial phase of the project involved designing more than 100 transects distributed across the coastline, each 1 km in length, which were to be monitored by volunteers. During the fieldwork for transect design, we identified a total of 126 alien species. This is a substantial number, considering that the observations were confined to the transect areas. Notably, among the 126 observed taxa, 24 represented floristic novelties: 7 were new to the Costa Brava, 7 to the province of Girona, 4 to Catalonia, 1 to Spain, 1 to the Iberian Peninsula, and 4 to Europe. Additionally, we provide information on other alien taxa that, although not novel for the study area, could be significant for control and management efforts. These observations provide a foundation for compiling a comprehensive catalog of the alien flora of the Costa Brava. Full article

The Zingiberaceae family is widely recognized for its diversity, ecological significance, and economic value, playing a crucial role in both natural ecosystems and local livelihoods. This study investigates the species diversity, traditional uses, and economic importance of Zingiberaceae in Kalasin Province, northeastern Thailand, while also assessing the conservation status of species found in natural habitats. A total of 69 Zingiberaceae taxa were identified across the province, with 7 taxa found occurring only in natural habitats and 36 taxa found only in cultivation, while 26 taxa were found in both situations. Of these, twenty-five wild taxa represent new records for the province, and six are endemic. Traditional uses include food, spices, medicine, ornamental plants, commercial cultivation, rituals and socio-religious activities, and cosmetics, with rhizomes being the most utilized plant part. Boesenbergia rotunda (L.) Mansf. displayed the highest economic value. Based on conservation assessments according to IUCN red list criteria, Globba conferta M.F.Newman is proposed as critically endangered (CR), 5 species as endangered, 10 taxa as vulnerable, and 17 taxa as least concern. These findings emphasize the ecological, horticultural, and economic importance of Zingiberaceae in Kalasin, where the trade of herbal products and commercial cultivation significantly contribute to local livelihoods. To ensure long-term sustainability, conservation strategies should be prioritized, balancing biodiversity preservation with economic and horticultural benefits. Full article

Diatoms are among the most common epibionts and have been recorded on the surfaces of various living substrates, either plants or animals. However, studies on them are still scarce in view of the many substrata available. In this study, epibiotic diatoms living on Callinectes bellicosus were identified for the first time from a subtropical coastal lagoon in Northwest Mexico. We tested the null hypothesis that the diatom flora living on the carapaces of C. bellicosus would not be similar to that recorded for mangrove sediments, its typical habitat. The epibiotic diatoms were brushed off from the carapaces of two specimens, acid-cleaned, mounted in synthetic resin, and identified based on frustule morphology. This way, 106 taxa from 46 genera were recorded, including 25 singletons, and 6 new records for the Mexican northwest region. The best-represented genera were Nitzschia (10 taxa), Mastogloia (9), Diploneis (8), Navicula (7), Amphora (5), Cocconeis (5), Tryblionella (4), and Gyrosigma (4). Species composition included 93% of local taxa, thus refuting the proposed hypothesis and supporting the alternate one. Although the estimated species richness was lower than that in sediments, it deems the green crab carapace a favorable substrate for the growth of benthic diatoms. Full article

The quality of pasteurized milk is commonly assessed through microbiological analysis, with variations in storage conditions significantly impacting the suppression of bacterial growth throughout the milk’s shelf life. This study investigated the dynamics of total bacterial counts (TBCs) and bacterial community shifts in milk that underwent pasteurization at 80 °C for 15 s. The milk was subsequently stored at 4 °C for varying intervals of 1, 4, 7, 10, 13, and 16 days. Culture-based testing revealed a significant TBC increase during the storage period spanning 1 to 16 days (up to −log10 4.2 CFU/mL at day 16). The TBC in pasteurized milk exhibited accelerated microbial growth from day 13 onwards, ultimately peaking on day 16. Bacillus was detected through 16S rRNA identification. Principal component analysis demonstrated a significant impact of storage time on bacterial communities in pasteurized milk. Analysis of bacterial diversity revealed a negative correlation between the Shannon index and the duration of pasteurized milk storage. Using high-throughput sequencing, Streptococcus and Acinetobacter were detected as prevalent bacterial genera, with Streptococcus dysgalactiae and Streptococcus uberis showing as dominant taxa. The presence of Streptococcus dysgalactiae and Streptococcus uberis in pasteurized milk might be attributed to the initial contamination from raw milk with mastitis. This study offers new evidence of the prevalence of bacterial community in pasteurized milk, thereby adding value to the enhancement of quality control and the development of strategies for reducing microbial risks. Full article

Zooplankton are key components of estuarine trophic networks. However, routine monitoring is hindered by the difficulty of morphology-based identification. DNA-based methods allow us to circumvent some of these hurdles, providing precise species identifications regardless of the taxonomic expertise of the investigator or the developmental stage of the specimens. However, the process is dependent on the completeness of the reference libraries. In this study, we sought to evaluate the potential of DNA metabarcoding to assess the seasonal (summer, autumn, and early spring) and spatial dynamics of zooplankton (four locations spanning ca. 6 km) in the Lima estuary (NW Portugal). Two genetic markers were used: the cytochrome c oxidase subunit I and the V4 hypervariable region of the ribosomal 18S rRNA genes. Overall, 327 species were recovered, and both markers displayed minute overlap (7% were detected with both markers). Species richness, composition, and taxonomic distinctness were majorly influenced by the season, with a declining tendency from summer (highest number of exclusive species, n = 74) to spring. Second to season, the taxa composition was influenced by spatial variation where the most downstream site displayed the highest number of exclusive species, n = 53. A total of 16 non-indigenous species were detected using metabarcoding, but only one (Austrominus modestus) has been documented out in the estuary. In conclusion, both the seasonal and spatial gradients influenced the recovered richness, composition, and taxonomic distinctness, confirming the great aptitude of DNA metabarcoding for providing higher density monitoring and shedding new light on the composition and dynamics of complex zooplankton communities. Full article

This study hypothesized that geographic segregation of certain extreme natures of the same kind could be an indicator of access to new natural microbial resources. Root-layer fungi and soil properties native to well-conserved volcanic topographies from two geographically segregated ocean volcanic islands beside the Korean Peninsula were analyzed. Four segregated sampling sites that represented the ocean volcanoes’ unique natural characters (tuff layer, caldera, and two steep cliffs) were examined. A total of 1356 operational taxonomic units classified into 7 phyla and 196 genera were obtained. Soil analysis showed that the sand proportion varied from 32.0–57.4%, and silt, 39.4–64.8%. The tuff layer terrain was the only terrain classified as silt soil. Soil C_org contents ranged from 2.78–15.12%; TN, 0.159–0.843; salinity, 0.001–0.019; and pH, 5.0–7.4. The larger the island area, the less oceanic salinity inflow, but TN and C_org decreased, and pH increased. The Shannon diversity index varied from 4.81–5.23 and was higher at the larger or center of larger islands. As geographic segregation (distance) increased, the proportion of taxa commonly identified decreased. Thus, geographic isolation of certain natural features (e.g., volcanic islands) may be a preferential clue to accessing a broader range of potential microbial resources. Full article

The key role of benthic diatoms in coastal ecosystems highlights the relevance of studying their biodiversity and developing integrated biodiversity conservation measures. Benthic diatom richness in the northern part of the Black Sea was estimated based on both published data and our own data. The checklist of benthic diatoms includes 1100 species and intraspecific taxa, 953 species, 149 genera, 61 families, 32 orders, and 3 classes of Bacillariophyta. More than 280 species and intraspecific taxa, as well as 8 genera new to the diatom flora of the Black Sea and 7 species new to science, were revealed. An interregional analysis of the diversity of benthic Bacillariophyta along the coasts of Bulgaria, Romania, and Crimea, as well as the northwestern and northeastern parts of the Black Sea shelf, was carried out using the Taxonomic Distinctness Indices (TaxDI). The lowest TaxDI value for Crimea was closest to the average value expected for the Black Sea diatom flora, indicating a large proportion of polyspecies branches in the taxocene structure, which resulted in the maximum species richness (species/genus = 7) and led to a decrease in the vertical evenness of hierarchical tree. On the contrary, the highest TaxDI value was detected off the Romanian coast, which was caused by the significant proportion of mono- and oligospecies branches and minimal species saturation in the taxocene structure (species/genus = 4). We also identified some species with a high taxonomic exclusivity rank. If these species disappear, the entire architectonics of the Black Sea hierarchical tree of Bacillariophyta may be significantly altered. Such region-specific species are given the highest protection priority since they have great importance for gene pool conservation. Full article

Amaranthus is a genus taxonomically complex because of its high morphological variability, which led to nomenclatural disorders, misapplication of names, and misidentifications. Floristic and taxonomic studies on this genus are still incomplete, and many questions remain open. Seed micromorphology has been shown to play an important role in the taxonomy of plants. Regarding Amaranthaceae and Amaranthus, investigations are rare, and they refer to one or a few species. With the primary aim to test if seed features are helpful in the taxonomy of Amaranthus, we here present a detailed SEM study on seed micromorphology in 25 Amaranthus taxa using morphometric methods. Seeds were collected from field surveys and herbarium specimens; 14 seed coat features (7 qualitative and 7 quantitative) were measured on 111 samples (up to 5 seeds per sample). The results obtained revealed that seeds micromorphology provides interesting new taxonomic data concerning some taxa (species and below ranks). In fact, we were able to distinguish a few seed types, including one or more taxa, i.e., blitum-type, crassipes-type, deflexus-type, tuberculatus-type, and viridis-type. On the other hand, seed features are not useful for other species, for example, those included in the deflexus-type (A. deflexus, A. vulgatissimus, A. cacciatoi, A. spinosus, A. dubius, and A. stadleyanus). A diagnostic key of the studied taxa is proposed. Subgenera cannot be distinguished using seed features, thus confirming the published molecular data. All these facts reveal, once again, the taxonomic complexity of the genus Amaranthus since, e.g., just a few seed types can be defined. Full article

During an investigation of fungal diversity on fruit trees in Guizhou Province, 23 Cladosporium strains were isolated from various locations in Guizhou Province. Culture characteristics, morphology and molecular phylogenetic analysis of three genetic markers, namely, the internal transcribed spacer regions (ITS) of the rDNA, partial fragments of actin (act), and the translation elongation factor 1-α (tef1-ɑ) loci were used to characterize these isolates. Seven new Cladosporium species and new host records for five other species were introduced, with detailed descriptions and illustrations. This study showed that there is a rich diversity of Cladosporium spp. in fruit trees in Guizhou Province. Full article

In the last 100 years, the population of the land of Israel has increased dramatically, accompanied by a very intense and accelerated economic and industrial growth. The objective of the present review is to reveal how these major changes have affected the Mediterranean marine and coastal environment. The present review analyzes the global, regional, and local factors and processes that cause substantial environmental changes affecting a variety of marine habitats and taxa. During the past century these include: (1) seawater warming that enhances the considerable introduction and establishment of non-indigenous tropical, i.e., Lessepsian, species; (2) overfishing of native biota that seems to contribute to this process; (3) sea-level rise, associated with climate change, which may threaten the sensitive intertidal abrasion platforms; (4) chemical, noise, and light pollution and marine debris; (5) massive sand mining from the beaches, which caused severe erosion in many coastal sections and was banned in Israel in 1964; (6) extensive dredging in the sea, mainly related to the construction and development of large ports, which can be detrimental for the benthic biota, especially in rocky substrates; and (7) marine structures (harbors, marinas, detached breakwaters) that interfere with the natural pattern of sand transport along the coast and cause morphological changes (sand erosion or accumulation) on nearby beaches and the seabed. Israel’s coast is presently characterized by intense anthropogenic activity and many stakeholders with considerable conflicts between them and with the marine ecosystem. A few environmental impacts have ceased, and others have been reduced considerably, but the extent of many additional types have increased significantly, and new impacts have appeared in recent years. Some environmental impacts are beyond our control, and others can be reduced by proper management, but it is predicted that certain major environmental impacts, such as Lessepsian migration, will continue in the future at enhanced rates. Full article

In the genus Phyteuma, the taxonomic delimitation of some species is difficult since a high variability of morphological traits, such as flower color, is present, probably due to high levels of hybridization. Historic descriptions and the morphological traits used in the taxonomic keys are sometimes unclear and lead to misinterpretations. Here, a detailed analysis of flower color variability in different populations of sympatric P. spicatum, P. ovatum, and P. persicifolium constitutes a new approach to clarifying the taxonomic statuses. The numeric analysis of color, providing colorimetric variables, together with the detailed description of the metabolic profiles of populations with different flower colors, constitute a unique chemical fingerprint that identifies species and subspecies with clear markers. This study is the most complete metabolic research on genus Phyteuma, since we identified and quantified 44 phenolic compounds using HPLC-MS, comprising 14 phenolic acids, 23 flavonols and flavones, and, for the first time in the genus, 7 anthocyanins involved in flower color variability. This approach contributes to clarifying the differences between species, which is particularly relevant in taxonomic complexes such as the present, where morphology fails to clearly differentiate taxa at specific and intraspecific levels. Full article

Invasive predators pose a critical threat to native taxa. Body size plays an important role in mediating the interactions of predator and prey. For piscivorous fishes, increased predator body size can be accompanied by the selection of increasingly larger prey or may reflect a mix of small and large prey. Knowledge of such interactions helps determine how predation affects population vital rates. Here, we assessed the predatory effects of invasive Brown Trout (Salmo trutta) on populations of native Rio Grande Sucker (Catostomus plebeius) and Rio Grande Chub (Gila pandora) in streams of the Jemez River watershed (New Mexico, USA). Trout diets were sampled every two weeks during the 2020 growing season. Predator and prey body lengths were measured to examine relationships to better understand patterns of piscivory and quantify the threat Brown Trout pose to populations of Rio Grande Chub and Rio Grande Sucker. Across all streams and sampling dates, 7% of Brown Trout diets contained fish. Predator–prey length relationships reflected a ‘wedge’ pattern, indicating that Brown Trout consumed an increasing range of prey body sizes as they grew larger. Rio Grande Sucker and Rio Grande Chub comprised 46% of consumed fishes. The findings demonstrated that Rio Grande Sucker and Rio Grande Chub experience constant predation over the growing season by Brown Trout. Moreover, our study provides evidence that these invasive predators pose a threat to the viability of Rio Grande Chub and Rio Grande Sucker populations. Conservation efforts to protect these chub and sucker populations must account for and directly address predation by invasive Brown Trout. Full article