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Authors = Seyed Mohammad Khatami

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15 pages, 5154 KiB  
Article
Effective Boundary Correction for Deterministic Lateral Displacement Microchannels to Improve Cell Separation: A Numerical and Experimental Study
by Shaghayegh Mirhosseini, Mohammadmahdi Eskandarisani, Aryanaz Faghih Nasiri, Fatemeh Khatami, Akram Mirzaei, Majid Badieirostami, Seyed Mohammad Kazem Aghamir and Mohammadreza Kolahdouz
Biosensors 2024, 14(10), 466; https://doi.org/10.3390/bios14100466 - 29 Sep 2024
Cited by 5 | Viewed by 1724
Abstract
Particle separation and sorting techniques based on microfluidics have found extensive applications and are increasingly gaining prominence. This research presents the design and fabrication of a microfluidic device for separating cells using deterministic lateral displacement (DLD), enabling accuracy and continuity while being size-based. [...] Read more.
Particle separation and sorting techniques based on microfluidics have found extensive applications and are increasingly gaining prominence. This research presents the design and fabrication of a microfluidic device for separating cells using deterministic lateral displacement (DLD), enabling accuracy and continuity while being size-based. Nevertheless, it remains demanding, to completely reverse the detrimental effects of the boundaries that disturb the fluidic flow in the channel and reduce particle separation efficiency. This study introduces a novel approach to enhance the boundary structure of channels. By using this design, separation efficiency is boosted, and the fluid behavior around the walls is improved. The boundary correction (BC) enhances the operation of the microchannel and is very effective in microchannels. With boundary correction, the device exhibited improved separation efficiencies, but in its absence, separation efficiencies dropped. The collected microscopic images of the isolation of prostate cancer cell lines and red blood cells revealed promising outcomes. The efficiency of circulating tumor cell (CTC) throughput in the microfluidic channel, quantified as the ratio or proportion of tumor cells exiting the channel to cells entering it, exceeds 93%. Moreover, the efficiency of CTC isolation, expressed as the proportion of tumor cells from the upper outlet of the microfluidic channel to all cells, is over 89%. Additionally, the efficiency of red blood cell isolation, evaluated as the ratio of red blood cells from the lower outlet of the microfluidic channel to all cells, surpasses 77%. While using the same DLD separator without boundary correction reduced the separation efficiency by around 5%. Full article
(This article belongs to the Special Issue Biosensor Nanoengineering: Design, Operation and Implementation)
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13 pages, 887 KiB  
Article
Whole Exome Sequencing to Find Candidate Variants for the Prediction of Kidney Transplantation Efficacy
by Seyed Mohammad Kazem Aghamir, Hassan Roudgari, Hassan Heidari, Mohammad Salimi Asl, Yousef Jafari Abarghan, Venous Soleimani, Rahil Mashhadi and Fatemeh Khatami
Genes 2023, 14(6), 1251; https://doi.org/10.3390/genes14061251 - 11 Jun 2023
Cited by 3 | Viewed by 2428
Abstract
Introduction: Kidney transplantation is the optimal treatment strategy for some end-stage renal disease (ESRD); however, graft survival and the success of the transplantation depend on several elements, including the genetics of recipients. In this study, we evaluated exon loci variants based on a [...] Read more.
Introduction: Kidney transplantation is the optimal treatment strategy for some end-stage renal disease (ESRD); however, graft survival and the success of the transplantation depend on several elements, including the genetics of recipients. In this study, we evaluated exon loci variants based on a high-resolution Next Generation Sequencing (NGS) method. Methods: We evaluated whole-exome sequencing (WES) of transplanted kidney recipients in a prospective study. The study involved a total of 10 patients (5 without a history of rejection and 5 with). About five milliliters of blood were collected for DNA extraction, followed by whole-exome sequencing based on molecular inversion probes (MIPs). Results: Sequencing and variant filtering identified nine pathogenic variants in rejecting patients (low survival). Interestingly, in five patients with successful kidney transplantation, we found 86 SNPs in 63 genes 61 were variants of uncertain significance (VUS), 5 were likely pathogenic, and five were likely benign/benign. The only overlap between rejecting and non-rejecting patients was SNPs rs529922492 in rejecting and rs773542127 in non-rejecting patients’ MUC4 gene. Conclusions: Nine variants of rs779232502, rs3831942, rs564955632, rs529922492, rs762675930, rs569593251, rs192347509, rs548514380, and rs72648913 have roles in short graft survival. Full article
(This article belongs to the Special Issue Cancer Systems Biology and Genomics)
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16 pages, 5508 KiB  
Article
The Effectiveness of Rubber Bumpers in Reducing the Effects of Earthquake-Induced Pounding between Base-Isolated Buildings
by Seyed Mohammad Khatami, Hosein Naderpour, Alireza Mortezaei, Alireza Sharbatdar, Natalia Lasowicz and Robert Jankowski
Appl. Sci. 2022, 12(10), 4971; https://doi.org/10.3390/app12104971 - 14 May 2022
Cited by 11 | Viewed by 2717
Abstract
The methods for preventing earthquake-induced structural pounding between two adjacent buildings include ensuring a sufficient separation distance between them or decreasing their relative displacement during seismic excitation. Some equations or even specific values of such gap sizes between two buildings have been introduced [...] Read more.
The methods for preventing earthquake-induced structural pounding between two adjacent buildings include ensuring a sufficient separation distance between them or decreasing their relative displacement during seismic excitation. Some equations or even specific values of such gap sizes between two buildings have been introduced so as to avoid collisions. Increasing the stiffness of buildings, using tuned mass dampers, applying liquid dampers, or decreasing the mass of the structures may reduce lateral displacements, and therefore pounding can be prevented. On the other hand, the application of base isolation systems may result in the elongation of the natural period of the building, thus increasing the probability of structural pounding. The aim of the present paper is to verify the effectiveness of using rubber bumpers to reduce the negative effects of earthquake-induced pounding between base-isolated buildings. The analysis was conducted for different gap sizes between buildings, as well as for various values of the thickness, number and stiffness of rubber bumpers. The results of the study show that the peak impact force decreases with increasing thickness, stiffness, and number of bumpers. Moreover, the peak impact forces are reduced with increasing gap size. The results of the investigation clearly indicate that the use of additional rubber bumpers can be considered an effective method for reducing the negative effects of earthquake-induced pounding between base-isolated buildings. Full article
(This article belongs to the Topic Advances in Dynamics of Building Structures)
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15 pages, 2454 KiB  
Article
Effective Gap Size Index for Determination of Optimum Separation Distance Preventing Pounding between Buildings during Earthquakes
by Seyed Mohammad Khatami, Hosein Naderpour, Alireza Mortezaei, Seyed Mohammad Nazem Razavi, Natalia Lasowicz and Robert Jankowski
Appl. Sci. 2021, 11(5), 2322; https://doi.org/10.3390/app11052322 - 5 Mar 2021
Cited by 8 | Viewed by 2658
Abstract
Seismic excitations may lead to collisions between adjacent civil engineering structures, causing major damage. In this paper, an effective equation for calculating the gap size index is proposed so as to provide the optimum separation distance preventing structural pounding during different earthquakes. Evaluation [...] Read more.
Seismic excitations may lead to collisions between adjacent civil engineering structures, causing major damage. In this paper, an effective equation for calculating the gap size index is proposed so as to provide the optimum separation distance preventing structural pounding during different earthquakes. Evaluation of the best prediction of the required separation distance between two adjacent buildings was carried out by using the lumped mass multi-degrees of freedom models of structures. A special computer program was used to perform dynamic analyses in order to confirm the accuracy of the proposed formula. For this purpose, several different models of buildings with various properties under different earthquake excitations were analyzed. The results of the study clearly show that the proposed formula for the gap size index (based on vibration periods and damping ratios of buildings) is effective and it allows us to calculate the optimum separation between adjacent structures preventing their pounding during different earthquakes. Full article
(This article belongs to the Section Civil Engineering)
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16 pages, 2447 KiB  
Article
An ANN-Based Approach for Prediction of Sufficient Seismic Gap between Adjacent Buildings Prone to Earthquake-Induced Pounding
by Seyed Mohammad Khatami, Hosein Naderpour, Seyed Mohammad Nazem Razavi, Rui Carneiro Barros, Barbara Sołtysik and Robert Jankowski
Appl. Sci. 2020, 10(10), 3591; https://doi.org/10.3390/app10103591 - 22 May 2020
Cited by 16 | Viewed by 3133
Abstract
Earthquake-induced structural pounding may cause major damages to structures, and therefore it should be prevented. This study is focused on using an artificial neural network (ANN) method to determine the sufficient seismic gap in order to avoid collisions between two adjacent buildings during [...] Read more.
Earthquake-induced structural pounding may cause major damages to structures, and therefore it should be prevented. This study is focused on using an artificial neural network (ANN) method to determine the sufficient seismic gap in order to avoid collisions between two adjacent buildings during seismic excitations. Six lumped mass models of structures with a different number of stories (from one to six) have been considered in the study. The earthquake characteristics and the parameters of buildings have been defined as inputs in the ANN analysis. The required seismic gap preventing pounding has been firstly determined for specified structural arrangements and earthquake records. In order to validate the method for other structural parameters, the study has been further extended for buildings with different values of height, mass, and stiffness of each story. Finally, the parametric analysis has been conducted for various earthquakes scaled to different values of the peak ground acceleration (PGA). The results of the verification and validation analyses indicate that the determined seismic gaps are large enough to prevent structural collisions, and they are just appropriate for all different structural arrangements, seismic excitations, and structural parameters. The results of the parametric analysis show that the increase in the PGA of earthquake records leads to a substantial, nearly uniform, increase in the required seismic gap between structures. The above conclusions clearly indicate that the ANN method can be successfully used to determine the minimal distance between two adjacent buildings preventing their collisions during different seismic excitations. Full article
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16 pages, 6630 KiB  
Article
Study on Methods to Control Interstory Deflections
by Seyed Mohammad Khatami, Hosein Naderpour, Seyed Mohammad Nazem Razavi, Rui Carneiro Barros, Anna Jakubczyk-Gałczyńska and Robert Jankowski
Geosciences 2020, 10(2), 75; https://doi.org/10.3390/geosciences10020075 - 18 Feb 2020
Cited by 12 | Viewed by 2818
Abstract
One of the possibilities to prevent building pounding between two adjacent structures is to consider appropriate in-between separation distance. Another approach might be focused on controlling the relative displacements during seismic excitations. Although the majority of building codes around the world recommend the [...] Read more.
One of the possibilities to prevent building pounding between two adjacent structures is to consider appropriate in-between separation distance. Another approach might be focused on controlling the relative displacements during seismic excitations. Although the majority of building codes around the world recommend the use of some equations of various distances between structures to avoid pounding; a lot of reports after earthquakes have obviously shown that safety situation or economic consideration is not always provided due to the collisions between buildings and high cost of land; respectively. The aim of the present paper is to focus the analysis on the properties of structures and conduct an in-depth analysis of available methods to control interstory deflections so as to prevent pounding. For this purpose, a numerical lumped mass model of the five-story building has been considered and its response under different earthquake records has been investigated. Firstly, the influence of the change in structural properties (story stiffness; mass and damping) has been examined. Then the application of tuned mass damper, base isolation and base isolation with rubber bumpers has been considered. The results of comparative analyses clearly indicate that using base isolation, with the addition of bumpers, can be selected as the best method to control building deflections and decrease absolute lateral displacement between two buildings so as to prevent their pounding during earthquakes Full article
(This article belongs to the Section Natural Hazards)
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16 pages, 4570 KiB  
Article
Determination of Peak Impact Force for Buildings Exposed to Structural Pounding during Earthquakes
by Seyed Mohammad Khatami, Hosein Naderpour, Rui Carneiro Barros, Anna Jakubczyk-Gałczyńska and Robert Jankowski
Geosciences 2020, 10(1), 18; https://doi.org/10.3390/geosciences10010018 - 30 Dec 2019
Cited by 12 | Viewed by 3760
Abstract
Structural pounding between adjacent, insufficiently separated buildings, or bridge segments, has been repeatedly observed during seismic excitations. Such earthquake-induced collisions may cause severe structural damage or even lead to the collapse of colliding structures. The aim of the present paper was to show [...] Read more.
Structural pounding between adjacent, insufficiently separated buildings, or bridge segments, has been repeatedly observed during seismic excitations. Such earthquake-induced collisions may cause severe structural damage or even lead to the collapse of colliding structures. The aim of the present paper was to show the results of the study focused on determination of peak impact forces during collisions between buildings exposed to different seismic excitations. A set of different ground motion records, with various peak ground acceleration (PGA) values and frequency contents, were considered. First, pounding-involved numerical analysis was conducted for the basic parameters of colliding buildings. Then, the parametric study was carried out for different structural natural periods, structural damping ratios, gap sizes between buildings and coefficients of restitution. The results of the analysis conducted for the basic structural parameters indicate that the largest response of the analysed buildings was observed for the Duzce earthquake. The parametric study showed that the pounding-involved structural response depended substantially on all parameters considered in the analysis, and the largest response was observed for different ground motions. The results of the study presented in this paper indicate that the value of the peak impact force expected during the time of the earthquake does not depend on the PGA value of ground motion, but rather on the frequency contents of excitation and pounding scenario. It is therefore recommended that the peak impact force for buildings exposed to structural pounding during earthquakes should be determined individually for the specific structural configuration taking into account the design ground motion. Full article
(This article belongs to the Section Natural Hazards)
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15 pages, 2162 KiB  
Article
Effective Formula for Impact Damping Ratio for Simulation of Earthquake-induced Structural Pounding
by Seyed Mohammad Khatami, Hosein Naderpour, Rui Carneiro Barros, Anna Jakubczyk-Gałczyńska and Robert Jankowski
Geosciences 2019, 9(8), 347; https://doi.org/10.3390/geosciences9080347 - 8 Aug 2019
Cited by 18 | Viewed by 4370
Abstract
Structural pounding during earthquakes may cause substantial damage to colliding structures. The phenomenon is numerically studied using different models of collisions. The aim of the present paper is to propose an effective formula for the impact damping ratio, as a parameter of the [...] Read more.
Structural pounding during earthquakes may cause substantial damage to colliding structures. The phenomenon is numerically studied using different models of collisions. The aim of the present paper is to propose an effective formula for the impact damping ratio, as a parameter of the impact force model used to study different problems of structural pounding under seismic excitations. Its accuracy has been verified by four various approaches. Firstly, for the case of collisions between two structural elements, the dissipated energy during impact has been compared to the loss of kinetic energy. In the second stage of verifications, the peak impact forces during single collision have been analyzed. Then, the accuracy of different equations have been verified by comparing the impact force time histories for the situation when a concrete ball is dropped on a rigid concrete surface. Finally, pounding between two structures during earthquakes has been studied. The results of the analysis focused on comparison between dissipated and kinetic energy show relatively low errors between calculated and assumed values of the coefficient of restitution when the proposed equation is used. In addition, the results of the comparison between experimentally and numerically determined peak impact forces during single collision confirm the effectiveness of the approach. The same conclusion has been obtained for the whole impact time history for collision between a ball and a rigid surface. Finally, the results of the comparative analysis, conducted for pounding between two structures during an earthquake, confirm the simulation accuracy when the proposed approach is used. The above conclusions indicate that the proposed formula for impact damping ratio, as a parameter of impact force model for simulation of earthquake-induced structural pounding, is very effective and accurate in numerical simulations in the case of different scenarios. Full article
(This article belongs to the Section Natural Hazards)
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